assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	1	29471-29588	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,cas14j	Orphan	GAATCACTGCGATTGACACTCGAAGAGTGGCA	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA|173aa|up_2|NZ_CP046307.1_26664_27183_+,NA	NA|308aa|up_9|NZ_CP046307.1_19609_20533_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|404aa|up_8|NZ_CP046307.1_20552_21764_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|121aa|up_7|NZ_CP046307.1_21856_22219_-	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|329aa|up_6|NZ_CP046307.1_22364_23351_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|149aa|up_5|NZ_CP046307.1_23465_23912_+	TIGR02698, Uncharacterized_16	NA|70aa|up_4|NZ_CP046307.1_23915_24125_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|734aa|up_3|NZ_CP046307.1_24266_26468_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|173aa|up_2|NZ_CP046307.1_26664_27183_+	NA	NA|245aa|up_1|NZ_CP046307.1_27351_28086_-	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087)	NA|393aa|up_0|NZ_CP046307.1_28253_29432_+	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|304aa|down_0|NZ_CP046307.1_29878_30790_+	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|740aa|down_1|NZ_CP046307.1_30910_33130_+	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|581aa|down_2|NZ_CP046307.1_33153_34896_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|236aa|down_3|NZ_CP046307.1_34892_35600_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|158aa|down_4|NZ_CP046307.1_35743_36217_+	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|113aa|down_5|NZ_CP046307.1_36206_36545_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|473aa|down_6|NZ_CP046307.1_36559_37978_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|68aa|down_7|NZ_CP046307.1_38333_38537_+	pfam05532, CsbD, CsbD-like	NA|386aa|down_8|NZ_CP046307.1_38613_39771_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|294aa|down_9|NZ_CP046307.1_39783_40665_-	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	2	1058448-1058547	2	CRISPRCasFinder	no	csa3	DEDDh,cas3,DinG,csa3,WYL,cas14j	Type I-A	TCGCTGACGCGGTCAATCACAGTGACTCGCAACA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA,NA|178aa|down_4|NZ_CP046307.1_1062874_1063408_-	NA|462aa|up_9|NZ_CP046307.1_1043191_1044577_+	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|158aa|up_8|NZ_CP046307.1_1044957_1045431_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|486aa|up_7|NZ_CP046307.1_1045535_1046993_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|478aa|up_6|NZ_CP046307.1_1047066_1048500_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|459aa|up_5|NZ_CP046307.1_1048533_1049910_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|307aa|up_4|NZ_CP046307.1_1050170_1051091_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|640aa|up_3|NZ_CP046307.1_1051166_1053086_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|281aa|up_2|NZ_CP046307.1_1053200_1054043_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|594aa|up_1|NZ_CP046307.1_1054458_1056240_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|584aa|up_0|NZ_CP046307.1_1056239_1057991_-	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein	NA|73aa|down_0|NZ_CP046307.1_1058591_1058810_-	pfam03672, UPF0154, Uncharacterized protein family (UPF0154)	NA|268aa|down_1|NZ_CP046307.1_1058917_1059721_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|303aa|down_2|NZ_CP046307.1_1059722_1060631_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|518aa|down_3|NZ_CP046307.1_1060938_1062492_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|178aa|down_4|NZ_CP046307.1_1062874_1063408_-	NA	NA|695aa|down_5|NZ_CP046307.1_1065184_1067269_-	pfam02687, FtsX, FtsX-like permease family	NA|258aa|down_6|NZ_CP046307.1_1067240_1068014_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|316aa|down_7|NZ_CP046307.1_1068104_1069052_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|232aa|down_8|NZ_CP046307.1_1069048_1069744_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|206aa|down_9|NZ_CP046307.1_1069902_1070520_+	PRK13556, PRK13556, FMN-dependent NADH-azoreductase
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	3	1979746-1979850	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,cas14j	Orphan	GGTCTTTGACCAATCGCAGTGATTC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA,NA|101aa|down_4|NZ_CP046307.1_1983399_1983702_+	NA|230aa|up_9|NZ_CP046307.1_1968582_1969272_-	pfam17924, TetR_C_19, Tetracyclin repressor-like, C-terminal domain	NA|327aa|up_8|NZ_CP046307.1_1969551_1970532_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|656aa|up_7|NZ_CP046307.1_1970822_1972790_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|301aa|up_6|NZ_CP046307.1_1972803_1973706_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|358aa|up_5|NZ_CP046307.1_1973692_1974766_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|188aa|up_4|NZ_CP046307.1_1975007_1975571_+	PRK00150, def, peptide deformylase; Reviewed	NA|401aa|up_3|NZ_CP046307.1_1975642_1976845_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|278aa|up_2|NZ_CP046307.1_1976944_1977778_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|227aa|up_1|NZ_CP046307.1_1977829_1978510_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|359aa|up_0|NZ_CP046307.1_1978510_1979587_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|174aa|down_0|NZ_CP046307.1_1980506_1981028_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|173aa|down_1|NZ_CP046307.1_1981039_1981558_-	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|298aa|down_2|NZ_CP046307.1_1981557_1982451_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|233aa|down_3|NZ_CP046307.1_1982478_1983177_-	cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|101aa|down_4|NZ_CP046307.1_1983399_1983702_+	NA	NA|529aa|down_5|NZ_CP046307.1_1984120_1985707_+	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|245aa|down_6|NZ_CP046307.1_1985719_1986454_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|454aa|down_7|NZ_CP046307.1_1986672_1988034_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|502aa|down_8|NZ_CP046307.1_1988142_1989648_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|121aa|down_9|NZ_CP046307.1_1990013_1990376_+	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	4	2732718-2732793	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,cas14j	Orphan	CGACGAGGAGCGCTAGCCCGCAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA|162aa|up_2|NZ_CP046307.1_2729509_2729995_-,NA	NA|341aa|up_9|NZ_CP046307.1_2720490_2721513_-	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|117aa|up_8|NZ_CP046307.1_2721631_2721982_+	pfam03829, PTSIIA_gutA, PTS system glucitol/sorbitol-specific IIA component	NA|388aa|up_7|NZ_CP046307.1_2721993_2723157_+	pfam01594, AI-2E_transport, AI-2E family transporter	NA|300aa|up_6|NZ_CP046307.1_2723385_2724285_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|753aa|up_5|NZ_CP046307.1_2724385_2726644_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|437aa|up_4|NZ_CP046307.1_2726655_2727966_+	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins	NA|433aa|up_3|NZ_CP046307.1_2728199_2729498_-	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|162aa|up_2|NZ_CP046307.1_2729509_2729995_-	NA	NA|621aa|up_1|NZ_CP046307.1_2730042_2731905_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|209aa|up_0|NZ_CP046307.1_2731933_2732560_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|448aa|down_0|NZ_CP046307.1_2732996_2734340_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|318aa|down_1|NZ_CP046307.1_2734418_2735372_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|305aa|down_2|NZ_CP046307.1_2735387_2736302_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|550aa|down_3|NZ_CP046307.1_2736321_2737971_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|1009aa|down_4|NZ_CP046307.1_2738061_2741088_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|746aa|down_5|NZ_CP046307.1_2741116_2743354_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|465aa|down_6|NZ_CP046307.1_2743347_2744742_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|287aa|down_7|NZ_CP046307.1_2744863_2745724_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|90aa|down_8|NZ_CP046307.1_2745941_2746211_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|706aa|down_9|NZ_CP046307.1_2746604_2748722_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	5	2794377-2794497	5	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,cas14j	Orphan	AGGGAGAGTAGTCACCGCTTTTCGAATCACTGCGA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA|78aa|up_9|NZ_CP046307.1_2785479_2785713_+,NA|173aa|up_8|NZ_CP046307.1_2785875_2786394_+,NA	NA|78aa|up_9|NZ_CP046307.1_2785479_2785713_+	NA	NA|173aa|up_8|NZ_CP046307.1_2785875_2786394_+	NA	NA|203aa|up_7|NZ_CP046307.1_2786489_2787098_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|230aa|up_6|NZ_CP046307.1_2787094_2787784_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|476aa|up_5|NZ_CP046307.1_2787788_2789216_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|236aa|up_4|NZ_CP046307.1_2789352_2790060_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|452aa|up_3|NZ_CP046307.1_2790049_2791405_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|213aa|up_2|NZ_CP046307.1_2791512_2792151_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|148aa|up_1|NZ_CP046307.1_2792478_2792922_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|315aa|up_0|NZ_CP046307.1_2793004_2793949_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|438aa|down_0|NZ_CP046307.1_2794686_2796000_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|591aa|down_1|NZ_CP046307.1_2795996_2797769_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|292aa|down_2|NZ_CP046307.1_2797934_2798810_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|623aa|down_3|NZ_CP046307.1_2799016_2800885_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|200aa|down_4|NZ_CP046307.1_2801014_2801614_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|328aa|down_5|NZ_CP046307.1_2801628_2802612_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|134aa|down_6|NZ_CP046307.1_2802611_2803013_-	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit	NA|123aa|down_7|NZ_CP046307.1_2803389_2803758_+	pfam10941, DUF2620, Protein of unknown function DUF2620	NA|439aa|down_8|NZ_CP046307.1_2803771_2805088_+	pfam10797, YhfT, Protein of unknown function	NA|292aa|down_9|NZ_CP046307.1_2805101_2805977_+	PRK09875, PRK09875, phosphotriesterase-related protein
GCF_009730155.1_ASM973015v1	NZ_CP046307	Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome	6	3103214-3103303	6	CRISPRCasFinder	no	csa3	DEDDh,cas3,DinG,csa3,WYL,cas14j	Type I-A	TAAAAAGTGTCGGAAATACAAGA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,cas14j	NA,NA|104aa|down_5|NZ_CP046307.1_3110538_3110850_+,NA|1399aa|down_6|NZ_CP046307.1_3111146_3115343_+,NA|258aa|down_7|NZ_CP046307.1_3116053_3116827_-,NA|231aa|down_9|NZ_CP046307.1_3117378_3118071_+	NA|653aa|up_9|NZ_CP046307.1_3094885_3096844_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|226aa|up_8|NZ_CP046307.1_3097059_3097737_+	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|123aa|up_7|NZ_CP046307.1_3097802_3098171_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|309aa|up_6|NZ_CP046307.1_3098366_3099293_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|276aa|up_5|NZ_CP046307.1_3099296_3100124_+	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|89aa|up_4|NZ_CP046307.1_3100289_3100556_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|144aa|up_3|NZ_CP046307.1_3100555_3100987_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|108aa|up_2|NZ_CP046307.1_3101009_3101333_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|382aa|up_1|NZ_CP046307.1_3101417_3102563_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|191aa|up_0|NZ_CP046307.1_3102614_3103187_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|93aa|down_0|NZ_CP046307.1_3103321_3103600_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_1|NZ_CP046307.1_3103556_3103841_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|288aa|down_2|NZ_CP046307.1_3104236_3105100_+	smart00344, HTH_ASNC, helix_turn_helix ASNC type	NA|254aa|down_3|NZ_CP046307.1_3107562_3108324_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|409aa|down_4|NZ_CP046307.1_3108334_3109561_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|104aa|down_5|NZ_CP046307.1_3110538_3110850_+	NA	NA|1399aa|down_6|NZ_CP046307.1_3111146_3115343_+	NA	NA|258aa|down_7|NZ_CP046307.1_3116053_3116827_-	NA	NA|82aa|down_8|NZ_CP046307.1_3116931_3117177_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|231aa|down_9|NZ_CP046307.1_3117378_3118071_+	NA
