assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009734125.1_ASM973412v1	NZ_CP046390	Lactobacillus delbrueckii strain TS1-06 chromosome, complete genome	1	193049-196957	1,1,1,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	Type I-E	GGATCACCCCCACTTGCGTGGGGAATAC,GGATCACCCCCACTTGCGTGGGGAATAC,GGATCACCCCCACTTGCGTGGGGAATAC,AAATTTAGGATCACCCCCACTTGCGTGGGGAATACTCC,GGATCACCCCCACTTGCGTGGGGAATAC,GGATCACCCCCACTTGCGTGGGGAATAC	28,28,28,38,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	63,62,53,53,62,53	63	TypeI-E	DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	NA,NA|68aa|down_9|NZ_CP046390.1_207932_208136_-	NA|754aa|up_9|NZ_CP046390.1_181095_183357_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|315aa|up_8|NZ_CP046390.1_183497_184442_-	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|169aa|up_7|NZ_CP046390.1_184522_185029_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|453aa|up_6|NZ_CP046390.1_185087_186446_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|388aa|up_5|NZ_CP046390.1_186610_187774_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|409aa|up_4|NZ_CP046390.1_187777_189004_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|367aa|up_3|NZ_CP046390.1_189006_190107_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|420aa|up_2|NZ_CP046390.1_190261_191521_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|up_1|NZ_CP046390.1_191523_192192_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|up_0|NZ_CP046390.1_192188_192803_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	DEDDh|291aa|down_0|NZ_CP046390.1_196986_197859_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|317aa|down_1|NZ_CP046390.1_197855_198806_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|208aa|down_2|NZ_CP046390.1_198808_199432_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|240aa|down_3|NZ_CP046390.1_199444_200164_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|359aa|down_4|NZ_CP046390.1_200144_201221_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|206aa|down_5|NZ_CP046390.1_201238_201856_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|575aa|down_6|NZ_CP046390.1_201865_203590_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|922aa|down_7|NZ_CP046390.1_203592_206358_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|75aa|down_8|NZ_CP046390.1_207369_207594_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|68aa|down_9|NZ_CP046390.1_207932_208136_-	NA
GCF_009734125.1_ASM973412v1	NZ_CP046390	Lactobacillus delbrueckii strain TS1-06 chromosome, complete genome	2	261448-261574	2	CRISPRCasFinder	no		DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	Orphan	AACGGCCTCCGGGTCAACTTCACCGGCTCTAGCCTCAG	38	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	NA,NA	NA|648aa|up_9|NZ_CP046390.1_245150_247094_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|441aa|up_8|NZ_CP046390.1_247145_248468_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|601aa|up_7|NZ_CP046390.1_248536_250339_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|313aa|up_6|NZ_CP046390.1_250611_251550_+	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG:  Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax	NA|590aa|up_5|NZ_CP046390.1_251606_253376_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|317aa|up_4|NZ_CP046390.1_253450_254401_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|400aa|up_3|NZ_CP046390.1_255460_256660_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|158aa|up_2|NZ_CP046390.1_256671_257145_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|566aa|up_1|NZ_CP046390.1_257364_259062_-	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	NA|305aa|up_0|NZ_CP046390.1_259295_260210_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|133aa|down_0|NZ_CP046390.1_261875_262274_+	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|547aa|down_1|NZ_CP046390.1_268006_269647_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|466aa|down_2|NZ_CP046390.1_269824_271222_-	PRK06481, PRK06481, flavocytochrome c	NA|238aa|down_3|NZ_CP046390.1_271391_272105_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|down_4|NZ_CP046390.1_272101_273157_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP046390.1_273193_274054_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|803aa|down_6|NZ_CP046390.1_274451_276860_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|163aa|down_7|NZ_CP046390.1_276911_277400_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|319aa|down_8|NZ_CP046390.1_277413_278370_-	TIGR03284, thym_sym, thymidylate synthase	NA|126aa|down_9|NZ_CP046390.1_279436_279814_+	PLN03232, PLN03232, ABC transporter C family member; Provisional
GCF_009734125.1_ASM973412v1	NZ_CP046390	Lactobacillus delbrueckii strain TS1-06 chromosome, complete genome	3	1050321-1050411	3	CRISPRCasFinder	no	cas14j	DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	Unclear	CCCTACGCCAACTATTATACCAC	23	0	0	NA	NA	NA	1	1	TypeV	DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j,Cas14u_CAS-V,c2c9_V-U4,csa3	NA|79aa|up_0|NZ_CP046390.1_1050072_1050309_-,NA|80aa|down_6|NZ_CP046390.1_1059230_1059470_+,NA|305aa|down_7|NZ_CP046390.1_1059528_1060443_-	NA|242aa|up_9|NZ_CP046390.1_1035613_1036339_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|408aa|up_8|NZ_CP046390.1_1036460_1037684_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|308aa|up_7|NZ_CP046390.1_1038518_1039442_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|181aa|up_6|NZ_CP046390.1_1039616_1040159_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|319aa|up_5|NZ_CP046390.1_1040304_1041261_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|426aa|up_4|NZ_CP046390.1_1041260_1042538_+	PRK09357, pyrC, dihydroorotase; Validated	NA|362aa|up_3|NZ_CP046390.1_1042537_1043623_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1063aa|up_2|NZ_CP046390.1_1043615_1046804_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|697aa|up_1|NZ_CP046390.1_1047858_1049949_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|79aa|up_0|NZ_CP046390.1_1050072_1050309_-	NA	NA|223aa|down_0|NZ_CP046390.1_1050503_1051172_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|253aa|down_1|NZ_CP046390.1_1052903_1053662_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|729aa|down_2|NZ_CP046390.1_1053986_1056173_+	COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]	NA|527aa|down_3|NZ_CP046390.1_1056159_1057740_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|261aa|down_4|NZ_CP046390.1_1057851_1058634_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|167aa|down_5|NZ_CP046390.1_1058633_1059134_+	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|80aa|down_6|NZ_CP046390.1_1059230_1059470_+	NA	NA|305aa|down_7|NZ_CP046390.1_1059528_1060443_-	NA	NA|76aa|down_8|NZ_CP046390.1_1060692_1060920_+	PRK10811, rne, ribonuclease E; Reviewed	NA|154aa|down_9|NZ_CP046390.1_1060999_1061461_-	pfam01797, Y1_Tnp, Transposase IS200 like
