assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009755625.1_ASM975562v1	NZ_CP046608	Burkholderia contaminans strain XL73 chromosome 2, complete sequence	1	302358-302551	1	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	GCCGACGAGGCCGCCGACCAGGCTG	25	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA|183aa|up_7|NZ_CP046608.1_292007_292556_+,NA|340aa|up_3|NZ_CP046608.1_296211_297231_+,NA|169aa|up_2|NZ_CP046608.1_297278_297785_+,NA|247aa|down_9|NZ_CP046608.1_319332_320073_+	NA|225aa|up_9|NZ_CP046608.1_287714_288389_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|1001aa|up_8|NZ_CP046608.1_288529_291532_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|183aa|up_7|NZ_CP046608.1_292007_292556_+	NA	NA|720aa|up_6|NZ_CP046608.1_292805_294965_+	pfam16967, TcfC, E-set like domain	NA|229aa|up_5|NZ_CP046608.1_294969_295656_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|159aa|up_4|NZ_CP046608.1_295655_296132_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|340aa|up_3|NZ_CP046608.1_296211_297231_+	NA	NA|169aa|up_2|NZ_CP046608.1_297278_297785_+	NA	NA|214aa|up_1|NZ_CP046608.1_297909_298551_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|1017aa|up_0|NZ_CP046608.1_298982_302033_-	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|1120aa|down_0|NZ_CP046608.1_305272_308632_-	smart00912, Haemagg_act, haemagglutination activity domain	NA|570aa|down_1|NZ_CP046608.1_308805_310515_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|339aa|down_2|NZ_CP046608.1_311128_312145_-	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional	NA|167aa|down_3|NZ_CP046608.1_312342_312843_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|574aa|down_4|NZ_CP046608.1_313087_314809_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|147aa|down_5|NZ_CP046608.1_314914_315355_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|197aa|down_6|NZ_CP046608.1_315696_316287_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|478aa|down_7|NZ_CP046608.1_316441_317875_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|464aa|down_8|NZ_CP046608.1_317907_319299_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|247aa|down_9|NZ_CP046608.1_319332_320073_+	NA
GCF_009755625.1_ASM975562v1	NZ_CP046608	Burkholderia contaminans strain XL73 chromosome 2, complete sequence	2	302622-302877	2	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	GCCGACGAGGCCGCCGACCAGGCTG	25	0	0	NA	NA	NA	3	3	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA|183aa|up_7|NZ_CP046608.1_292007_292556_+,NA|340aa|up_3|NZ_CP046608.1_296211_297231_+,NA|169aa|up_2|NZ_CP046608.1_297278_297785_+,NA|247aa|down_9|NZ_CP046608.1_319332_320073_+	NA|225aa|up_9|NZ_CP046608.1_287714_288389_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|1001aa|up_8|NZ_CP046608.1_288529_291532_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|183aa|up_7|NZ_CP046608.1_292007_292556_+	NA	NA|720aa|up_6|NZ_CP046608.1_292805_294965_+	pfam16967, TcfC, E-set like domain	NA|229aa|up_5|NZ_CP046608.1_294969_295656_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|159aa|up_4|NZ_CP046608.1_295655_296132_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|340aa|up_3|NZ_CP046608.1_296211_297231_+	NA	NA|169aa|up_2|NZ_CP046608.1_297278_297785_+	NA	NA|214aa|up_1|NZ_CP046608.1_297909_298551_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|1017aa|up_0|NZ_CP046608.1_298982_302033_-	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|1120aa|down_0|NZ_CP046608.1_305272_308632_-	smart00912, Haemagg_act, haemagglutination activity domain	NA|570aa|down_1|NZ_CP046608.1_308805_310515_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|339aa|down_2|NZ_CP046608.1_311128_312145_-	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional	NA|167aa|down_3|NZ_CP046608.1_312342_312843_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|574aa|down_4|NZ_CP046608.1_313087_314809_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|147aa|down_5|NZ_CP046608.1_314914_315355_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|197aa|down_6|NZ_CP046608.1_315696_316287_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|478aa|down_7|NZ_CP046608.1_316441_317875_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|464aa|down_8|NZ_CP046608.1_317907_319299_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|247aa|down_9|NZ_CP046608.1_319332_320073_+	NA
GCF_009755625.1_ASM975562v1	NZ_CP046608	Burkholderia contaminans strain XL73 chromosome 2, complete sequence	3	305385-305839	1,3	PILER-CR,CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	TTGCTGCCGACGAGGCCGCCGACATAGCT,TGCCGACGAGGCCGCCGACATAGCT	29,25	0	0	NA	NA	NA:NA	2,4	4	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA|183aa|up_8|NZ_CP046608.1_292007_292556_+,NA|340aa|up_4|NZ_CP046608.1_296211_297231_+,NA|169aa|up_3|NZ_CP046608.1_297278_297785_+,NA|247aa|down_8|NZ_CP046608.1_319332_320073_+	NA|1001aa|up_9|NZ_CP046608.1_288529_291532_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|183aa|up_8|NZ_CP046608.1_292007_292556_+	NA	NA|720aa|up_7|NZ_CP046608.1_292805_294965_+	pfam16967, TcfC, E-set like domain	NA|229aa|up_6|NZ_CP046608.1_294969_295656_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|159aa|up_5|NZ_CP046608.1_295655_296132_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|340aa|up_4|NZ_CP046608.1_296211_297231_+	NA	NA|169aa|up_3|NZ_CP046608.1_297278_297785_+	NA	NA|214aa|up_2|NZ_CP046608.1_297909_298551_+	PRK15308, PRK15308, fimbrial protein TcfA	NA|1017aa|up_1|NZ_CP046608.1_298982_302033_-	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|969aa|up_0|NZ_CP046608.1_302186_305093_-	smart00912, Haemagg_act, haemagglutination activity domain	NA|570aa|down_0|NZ_CP046608.1_308805_310515_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|339aa|down_1|NZ_CP046608.1_311128_312145_-	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional	NA|167aa|down_2|NZ_CP046608.1_312342_312843_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|574aa|down_3|NZ_CP046608.1_313087_314809_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|147aa|down_4|NZ_CP046608.1_314914_315355_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|197aa|down_5|NZ_CP046608.1_315696_316287_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|478aa|down_6|NZ_CP046608.1_316441_317875_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|464aa|down_7|NZ_CP046608.1_317907_319299_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|247aa|down_8|NZ_CP046608.1_319332_320073_+	NA	NA|380aa|down_9|NZ_CP046608.1_320202_321342_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
GCF_009755625.1_ASM975562v1	NZ_CP046608	Burkholderia contaminans strain XL73 chromosome 2, complete sequence	4	3029591-3029796	4	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Type I-A	GCGCCGCCGCCGAGGGCGCCGCCGAT	26	1	1	3029749-3029770	NZ_CP046609.1_3383553-3383574	NA	3	3	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA,NA	NA|364aa|up_9|NZ_CP046608.1_3018351_3019443_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|305aa|up_8|NZ_CP046608.1_3019439_3020354_+	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|363aa|up_7|NZ_CP046608.1_3020369_3021458_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_6|NZ_CP046608.1_3021477_3022299_+	PRK13547, hmuV, heme ABC transporter ATP-binding protein	NA|204aa|up_5|NZ_CP046608.1_3022428_3023040_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|707aa|up_4|NZ_CP046608.1_3023048_3025169_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|265aa|up_3|NZ_CP046608.1_3025408_3026203_+	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|276aa|up_2|NZ_CP046608.1_3026280_3027108_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|125aa|up_1|NZ_CP046608.1_3027207_3027582_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|279aa|up_0|NZ_CP046608.1_3027759_3028596_-	PRK11171, PRK11171, (S)-ureidoglycine aminohydrolase	NA|220aa|down_0|NZ_CP046608.1_3030300_3030960_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|140aa|down_1|NZ_CP046608.1_3031557_3031977_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|467aa|down_2|NZ_CP046608.1_3032232_3033633_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|208aa|down_3|NZ_CP046608.1_3033725_3034349_-	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|500aa|down_4|NZ_CP046608.1_3034421_3035921_-	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239	NA|291aa|down_5|NZ_CP046608.1_3035917_3036790_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|157aa|down_6|NZ_CP046608.1_3036890_3037361_-	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269)	NA|436aa|down_7|NZ_CP046608.1_3037357_3038665_-	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs	NA|178aa|down_8|NZ_CP046608.1_3038753_3039287_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|401aa|down_9|NZ_CP046608.1_3039447_3040650_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV
GCF_009755625.1_ASM975562v1	NZ_CP046609	Burkholderia contaminans strain XL73 chromosome 3, complete sequence	1	941042-941134	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	CACTCGGCAACCTCGGCGGCTCGA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA,NA	NA|122aa|up_9|NZ_CP046609.1_924942_925308_+	pfam04972, BON, BON domain	NA|697aa|up_8|NZ_CP046609.1_925444_927535_+	pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH)	NA|612aa|up_7|NZ_CP046609.1_928148_929984_+	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|263aa|up_6|NZ_CP046609.1_930141_930930_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|480aa|up_5|NZ_CP046609.1_931272_932712_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|244aa|up_4|NZ_CP046609.1_932850_933582_-	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|265aa|up_3|NZ_CP046609.1_933778_934573_-	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]	NA|325aa|up_2|NZ_CP046609.1_934569_935544_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|260aa|up_1|NZ_CP046609.1_935923_936703_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|415aa|up_0|NZ_CP046609.1_936770_938015_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|120aa|down_0|NZ_CP046609.1_941919_942279_+	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|172aa|down_1|NZ_CP046609.1_942313_942829_+	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional	NA|261aa|down_2|NZ_CP046609.1_942825_943608_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|140aa|down_3|NZ_CP046609.1_943648_944068_+	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase	NA|211aa|down_4|NZ_CP046609.1_944064_944697_+	pfam07608, DUF1571, Protein of unknown function (DUF1571)	NA|172aa|down_5|NZ_CP046609.1_944741_945257_+	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|350aa|down_6|NZ_CP046609.1_945303_946353_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|533aa|down_7|NZ_CP046609.1_946381_947980_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_8|NZ_CP046609.1_947982_949017_-	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|435aa|down_9|NZ_CP046609.1_949082_950387_-	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme
GCF_009755625.1_ASM975562v1	NZ_CP046609	Burkholderia contaminans strain XL73 chromosome 3, complete sequence	2	3399265-3399372	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	GCAGCCTCCCTTGGGGCGGCCCGGCGGGAG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,c2c9_V-U4,Cas14u_CAS-V,DinG,DEDDh	NA,NA|135aa|down_3|NZ_CP046609.1_3402202_3402607_-,NA|128aa|down_4|NZ_CP046609.1_3402603_3402987_-,NA|84aa|down_8|NZ_CP046609.1_3411368_3411620_-	NA|258aa|up_9|NZ_CP046609.1_3384928_3385702_+	PRK07024, PRK07024, SDR family oxidoreductase	NA|532aa|up_8|NZ_CP046609.1_3386087_3387683_+	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|549aa|up_7|NZ_CP046609.1_3387882_3389529_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|360aa|up_6|NZ_CP046609.1_3389545_3390625_-	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|606aa|up_5|NZ_CP046609.1_3390929_3392747_+	PRK02946, aceK, bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated	NA|256aa|up_4|NZ_CP046609.1_3392802_3393570_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|226aa|up_3|NZ_CP046609.1_3393681_3394359_+	PRK06953, PRK06953, SDR family oxidoreductase	NA|146aa|up_2|NZ_CP046609.1_3394398_3394836_+	PRK01842, PRK01842, hypothetical protein; Provisional	NA|425aa|up_1|NZ_CP046609.1_3394942_3396217_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|449aa|up_0|NZ_CP046609.1_3396682_3398029_+	PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|240aa|down_0|NZ_CP046609.1_3399380_3400100_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|341aa|down_1|NZ_CP046609.1_3400154_3401177_+	TIGR00433, biotin_synthase, biotin synthase	NA|242aa|down_2|NZ_CP046609.1_3401382_3402108_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|135aa|down_3|NZ_CP046609.1_3402202_3402607_-	NA	NA|128aa|down_4|NZ_CP046609.1_3402603_3402987_-	NA	NA|429aa|down_5|NZ_CP046609.1_3403143_3404430_-	cd01948, EAL, EAL domain	NA|556aa|down_6|NZ_CP046609.1_3404727_3406395_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|1191aa|down_7|NZ_CP046609.1_3406484_3410057_-	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein	NA|84aa|down_8|NZ_CP046609.1_3411368_3411620_-	NA	NA|186aa|down_9|NZ_CP046609.1_3411996_3412554_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates
