assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	1	639258-639397	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|415aa|up_9|NZ_CP041031.1_630366_631611_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|up_8|NZ_CP041031.1_631728_632736_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_7|NZ_CP041031.1_632941_633820_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_6|NZ_CP041031.1_633828_634824_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_5|NZ_CP041031.1_635032_635557_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|101aa|up_4|NZ_CP041031.1_636035_636338_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP041031.1_636388_636832_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP041031.1_636811_637330_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP041031.1_637457_638093_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP041031.1_638165_639206_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP041031.1_639410_639986_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP041031.1_639995_640586_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP041031.1_640605_641001_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP041031.1_640958_642995_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP041031.1_643059_643920_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP041031.1_643962_645054_-	pfam00419, Fimbrial, Fimbrial protein	NA|252aa|down_6|NZ_CP041031.1_648382_649138_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_7|NZ_CP041031.1_649138_649930_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_8|NZ_CP041031.1_649919_650723_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|159aa|down_9|NZ_CP041031.1_650761_651238_-	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	2	682393-682510	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP041031.1_682583_682748_-	NA|115aa|up_9|NZ_CP041031.1_670114_670459_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP041031.1_670647_671586_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP041031.1_671684_672674_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP041031.1_672695_674027_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP041031.1_674052_675261_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP041031.1_675294_677589_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP041031.1_677602_677992_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP041031.1_678063_679428_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP041031.1_679702_681034_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP041031.1_681061_682372_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP041031.1_682583_682748_-	NA	NA|234aa|down_1|NZ_CP041031.1_682770_683472_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP041031.1_683576_684473_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP041031.1_684523_684880_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP041031.1_685121_685487_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|161aa|down_5|NZ_CP041031.1_686835_687318_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_6|NZ_CP041031.1_687413_687713_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_7|NZ_CP041031.1_687702_688107_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_8|NZ_CP041031.1_688109_688415_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|123aa|down_9|NZ_CP041031.1_688452_688821_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	3	1055843-1056359	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP041031.1_1054552_1054693_-,NA	NA|434aa|up_9|NZ_CP041031.1_1045249_1046551_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041031.1_1046598_1048833_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041031.1_1048910_1049159_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041031.1_1049158_1049494_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041031.1_1049564_1050356_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041031.1_1050583_1052221_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041031.1_1052308_1053607_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041031.1_1053666_1054539_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041031.1_1054552_1054693_-	NA	NA|224aa|up_0|NZ_CP041031.1_1054831_1055503_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|NZ_CP041031.1_1058500_1059778_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_1|NZ_CP041031.1_1060096_1060882_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_CP041031.1_1060951_1062406_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_3|NZ_CP041031.1_1062499_1063837_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP041031.1_1063814_1064594_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP041031.1_1064590_1065451_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP041031.1_1065598_1066174_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP041031.1_1066190_1066451_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP041031.1_1066441_1067713_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|NZ_CP041031.1_1067790_1068156_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	4	1078743-1079382	4,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,28,29	0	0	NA	NA	I-E:I-E:I-E	9,9,10	10	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP041031.1_1066441_1067713_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP041031.1_1067790_1068156_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP041031.1_1068471_1070271_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP041031.1_1070270_1071983_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP041031.1_1072056_1072791_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP041031.1_1073055_1073208_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP041031.1_1076058_1076805_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP041031.1_1076786_1077437_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP041031.1_1077433_1078357_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041031.1_1078353_1078647_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041031.1_1079402_1080440_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041031.1_1080691_1081600_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041031.1_1081601_1083029_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041031.1_1083028_1083634_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041031.1_1083683_1084007_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041031.1_1084200_1084512_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041031.1_1084530_1085241_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041031.1_1085240_1085720_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041031.1_1085716_1086766_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041031.1_1086746_1087508_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	5	1580640-1580757	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP041031.1_1575720_1576035_-,NA	NA|300aa|up_9|NZ_CP041031.1_1567633_1568533_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP041031.1_1568725_1569916_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP041031.1_1569912_1571172_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP041031.1_1571161_1572790_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP041031.1_1573062_1574421_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP041031.1_1574425_1575502_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP041031.1_1575720_1576035_-	NA	NA|217aa|up_2|NZ_CP041031.1_1578454_1579105_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041031.1_1579158_1579413_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041031.1_1579412_1580543_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041031.1_1580776_1583062_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|NZ_CP041031.1_1587636_1588359_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|NZ_CP041031.1_1588505_1591133_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|NZ_CP041031.1_1591281_1592970_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_4|NZ_CP041031.1_1592966_1593590_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP041031.1_1593733_1598128_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP041031.1_1598128_1599778_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP041031.1_1599782_1600559_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP041031.1_1600632_1601817_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP041031.1_1601847_1603170_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	6	2261811-2261934	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP041031.1_2270830_2270920_+	NA|471aa|up_9|NZ_CP041031.1_2251265_2252678_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041031.1_2253233_2253443_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041031.1_2253898_2254525_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041031.1_2254545_2256648_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP041031.1_2256651_2257299_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041031.1_2257362_2258031_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041031.1_2258027_2258813_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041031.1_2258816_2259629_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041031.1_2259640_2261245_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041031.1_2261370_2261676_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041031.1_2262248_2263505_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041031.1_2263545_2264919_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041031.1_2265133_2265775_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041031.1_2265814_2266963_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041031.1_2267253_2268465_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041031.1_2268577_2269510_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041031.1_2269506_2270532_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041031.1_2270830_2270920_+	NA	NA|390aa|down_8|NZ_CP041031.1_2271085_2272255_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041031.1_2272400_2272982_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	7	2919999-2920090	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP041031.1_2907583_2909092_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP041031.1_2909513_2913476_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP041031.1_2913515_2914154_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP041031.1_2914441_2915533_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041031.1_2915532_2916225_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041031.1_2916236_2916623_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041031.1_2916630_2917431_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041031.1_2917440_2918031_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041031.1_2918041_2918536_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041031.1_2918556_2919885_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041031.1_2920513_2921110_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041031.1_2921130_2921358_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041031.1_2921395_2922637_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP041031.1_2922928_2924188_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP041031.1_2924447_2925368_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP041031.1_2925367_2925673_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP041031.1_2925765_2926365_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP041031.1_2926361_2928908_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP041031.1_2928907_2930080_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP041031.1_2930209_2930902_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	8	3215479-3215590	3	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTCTTACCTGATTCGGGTAA	22	1	1	3215548-3215573	NZ_CP041031.1_2786483-2786508	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_9|NZ_CP041031.1_3210934_3211075_-,NA|34aa|up_4|NZ_CP041031.1_3212335_3212437_-,NA|98aa|up_1|NZ_CP041031.1_3214023_3214317_-,NA|250aa|down_3|NZ_CP041031.1_3217783_3218533_+	NA|47aa|up_9|NZ_CP041031.1_3210934_3211075_-	NA	NA|121aa|up_8|NZ_CP041031.1_3211071_3211434_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP041031.1_3211430_3211721_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NZ_CP041031.1_3211713_3211884_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NZ_CP041031.1_3211883_3212339_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_4|NZ_CP041031.1_3212335_3212437_-	NA	NA|151aa|up_3|NZ_CP041031.1_3212529_3212982_-	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_2|NZ_CP041031.1_3212978_3213539_-	PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional	NA|98aa|up_1|NZ_CP041031.1_3214023_3214317_-	NA	NA|234aa|up_0|NZ_CP041031.1_3214313_3215015_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP041031.1_3216027_3216567_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP041031.1_3216636_3216867_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP041031.1_3216971_3217661_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|250aa|down_3|NZ_CP041031.1_3217783_3218533_+	NA	NA|276aa|down_4|NZ_CP041031.1_3218529_3219357_+	pfam11236, DUF3037, Protein of unknown function (DUF3037)	NA|69aa|down_5|NZ_CP041031.1_3219865_3220072_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP041031.1_3220147_3220444_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|341aa|down_7|NZ_CP041031.1_3220844_3221867_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|down_8|NZ_CP041031.1_3221863_3222646_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|227aa|down_9|NZ_CP041031.1_3223191_3223872_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	9	3228840-3228984	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_6|NZ_CP041031.1_3224225_3224507_+,NA|201aa|up_4|NZ_CP041031.1_3225037_3225640_-,NA|56aa|up_3|NZ_CP041031.1_3225882_3226050_+,NA	NA|227aa|up_9|NZ_CP041031.1_3223191_3223872_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP041031.1_3223868_3224051_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP041031.1_3224023_3224215_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP041031.1_3224225_3224507_+	NA	NA|74aa|up_5|NZ_CP041031.1_3224605_3224827_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP041031.1_3225037_3225640_-	NA	NA|56aa|up_3|NZ_CP041031.1_3225882_3226050_+	NA	NA|73aa|up_2|NZ_CP041031.1_3226089_3226308_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP041031.1_3226285_3227356_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP041031.1_3227490_3228774_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041031.1_3229007_3231269_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041031.1_3231451_3232885_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041031.1_3232960_3234013_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP041031.1_3234196_3235150_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP041031.1_3235190_3236186_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP041031.1_3236340_3237159_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP041031.1_3237159_3238218_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP041031.1_3238220_3238910_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP041031.1_3238909_3239683_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP041031.1_3239849_3239999_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	10	3743749-3743902	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP041031.1_3753479_3753929_-	NA|352aa|up_9|NZ_CP041031.1_3733574_3734630_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP041031.1_3734668_3735070_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP041031.1_3735127_3736372_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP041031.1_3736463_3736922_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP041031.1_3737182_3738640_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP041031.1_3738996_3739263_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP041031.1_3739569_3740022_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP041031.1_3740018_3741074_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP041031.1_3741144_3741915_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP041031.1_3741874_3743614_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP041031.1_3743931_3744429_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP041031.1_3744604_3745363_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP041031.1_3745654_3746395_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP041031.1_3746365_3747133_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP041031.1_3747338_3747917_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP041031.1_3748156_3750601_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP041031.1_3750643_3751117_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP041031.1_3751270_3752041_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP041031.1_3753479_3753929_-	NA	NA|451aa|down_9|NZ_CP041031.1_3758841_3760194_+	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_009761715.1_ASM976171v1	NZ_CP041031	Escherichia coli strain PT109 chromosome, complete genome	11	3931953-3932068	10	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|NZ_CP041031.1_3919968_3921147_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP041031.1_3921248_3921380_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP041031.1_3921468_3923124_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP041031.1_3923287_3924271_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP041031.1_3924246_3925857_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP041031.1_3925840_3926539_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP041031.1_3926652_3927417_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP041031.1_3927502_3928381_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP041031.1_3928719_3930420_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP041031.1_3930430_3931933_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP041031.1_3932132_3932828_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP041031.1_3932902_3935254_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP041031.1_3935418_3938325_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP041031.1_3938336_3938996_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP041031.1_3939112_3939928_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP041031.1_3940182_3942537_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP041031.1_3942589_3943876_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP041031.1_3943875_3944865_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP041031.1_3944861_3945683_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP041031.1_3945685_3946063_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
