assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	1	456315-457199	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,14,14	14	TypeI-E	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA	NA|122aa|up_9|NZ_CP044298.1_442162_442528_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP044298.1_442843_444643_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|245aa|up_7|NZ_CP044298.1_446428_447163_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_6|NZ_CP044298.1_447521_450188_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|161aa|up_5|NZ_CP044298.1_452140_452623_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP044298.1_452635_453727_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP044298.1_453729_454404_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP044298.1_454390_454990_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP044298.1_455005_455923_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP044298.1_455924_456209_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP044298.1_457281_458319_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP044298.1_458570_459479_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP044298.1_459480_460908_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP044298.1_460907_461513_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP044298.1_461562_461886_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP044298.1_462079_462391_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP044298.1_462409_463120_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP044298.1_463119_463599_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP044298.1_463595_464645_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP044298.1_464625_465387_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	2	945424-945541	2	CRISPRCasFinder	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA	NA|268aa|up_9|NZ_CP044298.1_933934_934738_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|62aa|up_8|NZ_CP044298.1_934778_934964_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_7|NZ_CP044298.1_934976_935876_-	PRK09956, PRK09956, ISNCY family transposase	NA|420aa|up_6|NZ_CP044298.1_937186_938446_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP044298.1_938435_940064_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP044298.1_940336_941695_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP044298.1_941699_942776_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP044298.1_943238_943889_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP044298.1_943942_944197_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP044298.1_944196_945327_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP044298.1_945560_947846_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP044298.1_948536_952289_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP044298.1_952416_953139_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP044298.1_953285_955913_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP044298.1_956061_957750_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP044298.1_957746_958370_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP044298.1_958513_962908_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP044298.1_962908_964558_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP044298.1_964562_965339_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP044298.1_965412_966597_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	3	1574956-1575079	3	CRISPRCasFinder	no	DEDDh	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA|30aa|down_7|NZ_CP044298.1_1583975_1584065_+	NA|471aa|up_9|NZ_CP044298.1_1564417_1565830_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP044298.1_1566386_1566596_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP044298.1_1567043_1567670_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP044298.1_1567690_1569793_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP044298.1_1569796_1570444_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP044298.1_1570507_1571176_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP044298.1_1571172_1571958_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP044298.1_1571961_1572774_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP044298.1_1572785_1574390_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP044298.1_1574515_1574821_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP044298.1_1575393_1576650_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP044298.1_1576690_1578064_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP044298.1_1578278_1578920_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP044298.1_1578959_1580108_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP044298.1_1580398_1581610_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP044298.1_1581722_1582655_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP044298.1_1582651_1583677_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP044298.1_1583975_1584065_+	NA	NA|390aa|down_8|NZ_CP044298.1_1584230_1585400_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP044298.1_1585634_1586216_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	4	2240297-2240388	4	CRISPRCasFinder	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA|70aa|up_9|NZ_CP044298.1_2229373_2229583_-,NA	NA|70aa|up_9|NZ_CP044298.1_2229373_2229583_-	NA	NA|1321aa|up_8|NZ_CP044298.1_2229637_2233600_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP044298.1_2233639_2234278_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP044298.1_2234565_2235657_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP044298.1_2235656_2236349_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP044298.1_2236360_2236747_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP044298.1_2236754_2237555_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP044298.1_2237564_2238155_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP044298.1_2238165_2238660_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP044298.1_2238680_2240009_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP044298.1_2240811_2241408_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP044298.1_2241428_2241656_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|307aa|down_2|NZ_CP044298.1_2244727_2245648_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_3|NZ_CP044298.1_2245647_2245953_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_4|NZ_CP044298.1_2246104_2246704_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_5|NZ_CP044298.1_2246700_2249247_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|231aa|down_6|NZ_CP044298.1_2250546_2251239_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_7|NZ_CP044298.1_2251211_2252240_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional	NA|915aa|down_8|NZ_CP044298.1_2252322_2255067_+	PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	NA|358aa|down_9|NZ_CP044298.1_2255138_2256212_+	COG0348, NapH, Polyferredoxin [Energy production and conversion]
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	5	2545346-2545490	5	CRISPRCasFinder	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA|94aa|up_5|NZ_CP044298.1_2541586_2541868_+,NA	NA|262aa|up_9|NZ_CP044298.1_2539770_2540556_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|up_8|NZ_CP044298.1_2540552_2541233_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_7|NZ_CP044298.1_2541229_2541412_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_6|NZ_CP044298.1_2541384_2541576_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_5|NZ_CP044298.1_2541586_2541868_+	NA	NA|73aa|up_4|NZ_CP044298.1_2541966_2542185_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|93aa|up_3|NZ_CP044298.1_2542231_2542510_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|73aa|up_2|NZ_CP044298.1_2542595_2542814_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP044298.1_2542791_2543862_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP044298.1_2543996_2545280_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP044298.1_2545513_2547775_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP044298.1_2547957_2549391_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP044298.1_2549466_2550519_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|332aa|down_3|NZ_CP044298.1_2551695_2552691_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP044298.1_2552845_2553664_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP044298.1_2553664_2554723_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP044298.1_2554725_2555415_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP044298.1_2555414_2556188_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP044298.1_2556354_2556504_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP044298.1_2556632_2557421_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	6	2775867-2775963	6	CRISPRCasFinder	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA	NA|231aa|up_9|NZ_CP044298.1_2767664_2768357_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP044298.1_2768576_2769119_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP044298.1_2769587_2770454_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP044298.1_2770455_2770668_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP044298.1_2770775_2771297_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP044298.1_2771332_2772718_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP044298.1_2772891_2773386_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP044298.1_2773388_2774111_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP044298.1_2774228_2774738_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP044298.1_2774734_2775802_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP044298.1_2775996_2776890_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP044298.1_2776886_2777702_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP044298.1_2777712_2778972_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP044298.1_2778981_2780649_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP044298.1_2780965_2782015_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP044298.1_2782036_2783272_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP044298.1_2783282_2784068_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP044298.1_2784295_2785441_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP044298.1_2785462_2786764_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP044298.1_2786820_2788182_-	PRK08044, PRK08044, allantoinase AllB
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	7	2916076-2916220	7	CRISPRCasFinder	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA|28aa|down_2|NZ_CP044298.1_2918265_2918349_-	NA|376aa|up_9|NZ_CP044298.1_2900031_2901159_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|357aa|up_8|NZ_CP044298.1_2901214_2902285_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_7|NZ_CP044298.1_2902377_2902959_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_6|NZ_CP044298.1_2902963_2904781_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_5|NZ_CP044298.1_2904937_2906311_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_4|NZ_CP044298.1_2906386_2907706_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_3|NZ_CP044298.1_2908112_2909408_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_2|NZ_CP044298.1_2909465_2910155_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_1|NZ_CP044298.1_2910344_2911547_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_0|NZ_CP044298.1_2911543_2914690_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|303aa|down_0|NZ_CP044298.1_2916243_2917152_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP044298.1_2917276_2918188_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP044298.1_2918265_2918349_-	NA	NA|95aa|down_3|NZ_CP044298.1_2918834_2919119_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP044298.1_2919190_2919868_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP044298.1_2920123_2920315_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP044298.1_2920364_2920889_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP044298.1_2921071_2921530_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP044298.1_2921649_2922459_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP044298.1_2922475_2923591_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009762415.1_ASM976241v1	NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	8	3280855-3280990	2	PILER-CR	no		WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA,NA	NA|126aa|up_9|NZ_CP044298.1_3271563_3271941_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP044298.1_3271947_3272790_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP044298.1_3272867_3273347_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP044298.1_3273538_3275401_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP044298.1_3275393_3275924_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP044298.1_3276031_3277363_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP044298.1_3277419_3277707_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP044298.1_3277703_3278990_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP044298.1_3279040_3279982_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP044298.1_3279996_3280767_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP044298.1_3281240_3282755_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP044298.1_3282785_3283928_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP044298.1_3284045_3285263_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP044298.1_3285336_3286890_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP044298.1_3286998_3287784_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP044298.1_3287789_3288380_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP044298.1_3288498_3288894_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP044298.1_3289154_3292373_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP044298.1_3292390_3293539_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP044298.1_3293994_3294816_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009762415.1_ASM976241v1	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	1	247796-247953	1	PILER-CR	no			Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	NA|41aa|up_9|NZ_CP044299.1_239745_239868_+,NA|114aa|up_8|NZ_CP044299.1_239869_240211_+,NA|120aa|up_7|NZ_CP044299.1_240215_240575_+,NA|235aa|up_6|NZ_CP044299.1_240802_241507_+,NA|140aa|up_5|NZ_CP044299.1_241539_241959_-,NA|166aa|down_0|NZ_CP044299.1_248142_248640_-,NA|68aa|down_1|NZ_CP044299.1_248654_248858_-,NA|59aa|down_3|NZ_CP044299.1_252210_252387_-	NA|41aa|up_9|NZ_CP044299.1_239745_239868_+	NA	NA|114aa|up_8|NZ_CP044299.1_239869_240211_+	NA	NA|120aa|up_7|NZ_CP044299.1_240215_240575_+	NA	NA|235aa|up_6|NZ_CP044299.1_240802_241507_+	NA	NA|140aa|up_5|NZ_CP044299.1_241539_241959_-	NA	NA|795aa|up_4|NZ_CP044299.1_242046_244431_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_3|NZ_CP044299.1_244681_245284_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_CP044299.1_245295_245532_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP044299.1_245687_246284_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP044299.1_246675_247557_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|166aa|down_0|NZ_CP044299.1_248142_248640_-	NA	NA|68aa|down_1|NZ_CP044299.1_248654_248858_-	NA	NA|819aa|down_2|NZ_CP044299.1_249308_251765_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_3|NZ_CP044299.1_252210_252387_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
