The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	2883085	285505	354571	2883085	integrase,tRNA,protease	uncultured_Mediterranean_phage(16.67%)	59	278207:278222	328622:328637
278207:278222	attL	TTTTTGGCGCTTTGGA	NA	NA	NA	NA
WP_000887349.1|285505_286813_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.0	7.6e-91
WP_111674332.1|286920_288207_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.6	1.7e-18
WP_000453785.1|288333_289386_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_123012211.1|289369_290524_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_088128080.1|290520_291324_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_001892155.1|291299_292016_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_001880897.1|292096_292306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821682.1|292532_293396_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001884612.1|293605_294034_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_101410752.1|294030_294756_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_111674330.1|294766_296047_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001145055.1|296046_296856_+	DUF1365 domain-containing protein	NA	NA	NA	NA	NA
WP_080299685.1|296788_298087_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.5	4.3e-46
WP_001229552.1|298089_298629_+	DUF2878 domain-containing protein	NA	NA	NA	NA	NA
WP_114793455.1|298561_299128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001234235.1|299124_299652_+	DUF3833 domain-containing protein	NA	NA	NA	NA	NA
WP_123012212.1|299742_301113_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.8	1.4e-114
WP_001262240.1|301170_301788_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_001884617.1|301810_302929_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000671617.1|303190_304495_+	inosine/guanosine kinase	NA	NA	NA	NA	NA
WP_001880910.1|304542_304956_-	DNA-binding protein H-NS	NA	NA	NA	NA	NA
WP_001048830.1|305643_307245_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_101410748.1|307653_308550_+	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_123012213.1|308554_309850_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_114709581.1|309853_310894_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_000043559.1|310945_312019_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_000193249.1|312018_312630_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_032471137.1|312672_313410_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_000880140.1|313391_314165_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_001067502.1|314161_314794_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
WP_123012214.1|314964_316422_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_123012215.1|316421_319097_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_123012216.1|319096_319774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123012217.1|320063_320339_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_123012218.1|320668_321832_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_123012219.1|321836_326225_+	trypsin-like peptidase domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	29.2	2.0e-71
WP_123012220.1|327060_327660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114742856.1|328292_329018_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
328622:328637	attR	TTTTTGGCGCTTTGGA	NA	NA	NA	NA
WP_123012221.1|329327_331553_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_001880921.1|331651_331882_-	cold shock domain-containing protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	1.3e-14
WP_000041728.1|332345_332666_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	39.5	1.3e-12
WP_000932415.1|332704_334975_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.8	6.6e-167
WP_001018084.1|335043_336720_-	transporter	NA	NA	NA	NA	NA
WP_000498418.1|336921_337185_-	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	2.9e-26
WP_123012222.1|337472_338741_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_001093848.1|338831_339686_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_085602429.1|339993_341640_-	putative pyridoxal-dependent aspartate 1-decarboxylase	NA	S4W1T5	Pandoravirus	27.3	2.3e-20
WP_000826868.1|341749_342259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123012223.1|342447_343353_-	lysine exporter LysO family protein	NA	NA	NA	NA	NA
WP_123012224.1|343373_344309_-	HDOD domain-containing protein	NA	A0A1C3NFB0	Phage_NCTB	21.5	6.4e-07
WP_001880934.1|344650_345259_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_001232640.1|345354_345903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001904237.1|346093_346639_-	response regulator	NA	NA	NA	NA	NA
WP_123012225.1|346587_348543_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_025998897.1|348765_350031_+	YdgA family protein	NA	NA	NA	NA	NA
WP_001893876.1|350107_351247_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	47.3	1.4e-88
WP_000506956.1|351327_352317_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA	NA
WP_123012226.1|352316_353825_-	inactive transglutaminase family protein	NA	NA	NA	NA	NA
WP_000476328.1|353833_354571_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	2883085	658368	668627	2883085		Vibrio_phage(80.0%)	13	NA	NA
WP_033932564.1|658368_658725_-	hypothetical protein	NA	Q9MCC3	Vibrio_phage	75.2	8.0e-43
WP_123012279.1|658908_659148_+	hypothetical protein	NA	O56843	Vibrio_virus	79.2	3.7e-28
WP_069217175.1|661311_661623_+	chemotaxis protein	NA	Q2PZB5	Vibrio_virus	81.8	7.7e-42
WP_032468570.1|661672_661867_+	hypothetical protein	NA	G8IRU7	Vibrio_phage	71.4	1.0e-20
WP_000672167.1|661900_662110_+	hypothetical protein	NA	G8IRU8	Vibrio_phage	65.2	1.3e-16
WP_123012280.1|662242_663661_+	hypothetical protein	NA	G8IRU9	Vibrio_phage	70.3	2.7e-142
WP_001160097.1|663660_664005_+	hypothetical protein	NA	Q64EV1	Vibrio_phage	90.4	1.0e-55
WP_123012281.1|664007_665378_+	toxin	NA	Q64EV0	Vibrio_phage	79.2	4.1e-204
WP_123012282.1|665388_665577_+	hypothetical protein	NA	Q64EU9	Vibrio_phage	70.4	1.4e-11
WP_123012283.1|666461_666905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123012284.1|666895_667012_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_123012285.1|667126_667675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000670603.1|668294_668627_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	7.0e-09
>prophage 3
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	2883085	1492168	1498786	2883085		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|1492168_1492639_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|1492903_1494013_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_085603053.1|1494053_1494707_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.5e-31
WP_085603051.1|1494711_1495815_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	4.5e-44
WP_000543544.1|1495840_1496290_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001891692.1|1496390_1497644_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|1497652_1498786_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 4
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	2883085	2573578	2580842	2883085		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_085603389.1|2573578_2574370_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	5.0e-69
WP_085603387.1|2574362_2574989_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	3.3e-36
WP_000177561.1|2574988_2575924_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116735.1|2575997_2577005_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_085603449.1|2577098_2579687_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|2579954_2580842_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 5
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	2883085	2810834	2818027	2883085		Faustovirus(16.67%)	9	NA	NA
WP_123012682.1|2810834_2812049_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.5e-32
WP_000331703.1|2812085_2812469_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|2812529_2812853_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105750.1|2812901_2813417_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_123012683.1|2813440_2815291_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.5	3.8e-104
WP_001124187.1|2815304_2815643_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|2815691_2815886_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107234.1|2816105_2817395_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_001162850.1|2817598_2818027_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 1
NZ_CP046738	Vibrio cholerae strain 2015V-1126 chromosome 2, complete sequence	1137386	479339	491259	1137386	integrase,terminase	Vibrio_phage(44.44%)	12	472202:472216	483491:483505
472202:472216	attL	TGTCAGGCAAACCCA	NA	NA	NA	NA
WP_095459089.1|479339_480563_-|integrase	site-specific integrase	integrase	R9TMP3	Vibrio_phage	76.7	4.6e-183
WP_000083581.1|480538_480727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000741597.1|480732_480996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196481.1|481247_481961_-	helix-turn-helix domain-containing protein	NA	R9TNM0	Vibrio_phage	85.3	3.7e-116
WP_000844441.1|482036_482231_+	hypothetical protein	NA	R9TPV3	Vibrio_phage	81.2	6.9e-25
WP_123011952.1|482851_483820_+	helix-turn-helix domain-containing protein	NA	R9TPU9	Vibrio_phage	57.4	2.1e-93
483491:483505	attR	TGTCAGGCAAACCCA	NA	NA	NA	NA
WP_123011953.1|483883_484702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011954.1|484815_485661_+	hypothetical protein	NA	A0A2R2Z334	Escherichia_phage	26.0	1.1e-13
WP_123011955.1|485653_487351_+|terminase	terminase	terminase	B0FEF1	Escherichia_phage	65.6	3.1e-217
WP_000983244.1|487347_489435_+	hypothetical protein	NA	A0A088CE71	Shigella_phage	58.2	1.2e-202
WP_000864710.1|489595_490003_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	48.3	3.8e-25
WP_114733063.1|490002_491259_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	41.5	4.9e-87
>prophage 2
NZ_CP046738	Vibrio cholerae strain 2015V-1126 chromosome 2, complete sequence	1137386	495702	516675	1137386		Aeromonas_phage(38.89%)	24	NA	NA
WP_050551874.1|495702_496041_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	49.5	3.6e-21
WP_123011957.1|496085_497150_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_000697326.1|497304_497775_-	low molecular weight phosphatase family protein	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	30.1	4.0e-18
WP_001128531.1|498153_498465_+	membrane protein	NA	R9TR41	Vibrio_phage	47.4	2.2e-20
WP_123011958.1|498533_499052_+	secretion activator protein	NA	Q6VT55	Vibrio_phage	63.2	4.7e-60
WP_000835321.1|499495_499717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000228289.1|499719_500298_+	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	36.9	7.9e-24
WP_123012132.1|500309_500570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108347673.1|500687_501692_+	ATPase	NA	A0A1I9KFD1	Aeromonas_phage	32.9	1.2e-22
WP_069730775.1|501754_502960_+	DUF4043 family protein	NA	A0A088CC32	Shigella_phage	58.3	2.7e-135
WP_000149718.1|502974_503355_+	hypothetical protein	NA	M4MCI2	Vibrio_phage	32.0	4.7e-09
WP_000149035.1|503412_503877_+	hypothetical protein	NA	A0A1I9KFH0	Aeromonas_phage	57.7	1.2e-27
WP_000450573.1|503879_504479_+	hypothetical protein	NA	A0A1I9KFD5	Aeromonas_phage	32.3	4.2e-20
WP_000117294.1|504478_505108_+	hypothetical protein	NA	A0A1I9KFD0	Aeromonas_phage	33.3	1.5e-23
WP_123011959.1|505122_507627_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A240EWW2	Vibrio_phage	31.2	3.9e-19
WP_114741335.1|507818_509459_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.3	4.7e-21
WP_123011960.1|509594_511202_+	hypothetical protein	NA	A0A1I9KFD2	Aeromonas_phage	45.6	2.7e-130
WP_123011961.1|511201_513178_+	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	32.9	3.0e-54
WP_000989817.1|513182_513545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123012133.1|513585_513927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011962.1|513926_514577_+	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	44.7	5.7e-39
WP_123011963.1|514580_514958_+	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	44.6	6.5e-19
WP_000331792.1|514960_515221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011964.1|515220_516675_+	ATPase	NA	M4MHC7	Vibrio_phage	36.6	7.3e-42
