The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	692185	698797	3057992		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|692185_693319_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_001888606.1|693327_694581_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|694680_695130_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001888607.1|695155_696259_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.5e-44
WP_000493874.1|696263_696917_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|696957_698067_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|698326_698797_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	1480603	1494685	3057992		Vibrio_phage(68.42%)	19	NA	NA
WP_000593519.1|1480603_1480978_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|1480974_1481751_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|1481850_1483050_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|1483046_1483340_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080112449.1|1483336_1484620_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.6	1.2e-218
WP_000493022.1|1484630_1484879_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|1485014_1485395_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_001888498.1|1485372_1486452_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	99.7	8.5e-213
WP_000492997.1|1486583_1486919_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000593519.1|1487526_1487901_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|1487897_1488674_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|1488773_1489973_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|1489969_1490263_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080112449.1|1490259_1491543_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.6	1.2e-218
WP_000493022.1|1491553_1491802_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|1491937_1492318_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_001888498.1|1492295_1493375_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	99.7	8.5e-213
WP_000492997.1|1493506_1493842_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000948761.1|1494373_1494685_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
>prophage 3
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	2345470	2352663	3057992		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2345470_2345899_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_001959105.1|2346102_2347392_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|2347611_2347806_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2347854_2348193_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_019830072.1|2348206_2350057_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	1.5e-105
WP_001886932.1|2350080_2350596_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2350644_2350968_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2351028_2351412_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_001886931.1|2351448_2352663_-	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	41.8	5.0e-28
>prophage 4
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	2449748	2505081	3057992	transposase,integrase,protease,tRNA	Bacillus_phage(20.0%)	45	2449483:2449499	2513683:2513699
2449483:2449499	attL	ATCGTTTTCACCAATAA	NA	NA	NA	NA
WP_158106858.1|2449748_2451098_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_158106859.1|2451106_2451682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106860.1|2451674_2453801_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_158106869.1|2453797_2456035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001888371.1|2456108_2456924_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_001019422.1|2456952_2457747_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000952227.1|2457756_2460003_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	26.1	9.3e-12
WP_001883821.1|2460005_2460587_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000801222.1|2461154_2461820_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA	NA
WP_001892300.1|2462012_2463071_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_001249919.1|2463108_2463360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000107102.1|2463937_2465272_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_158106861.1|2465534_2466857_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000128764.1|2466983_2468516_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	37.0	6.0e-87
WP_010895430.1|2468546_2469645_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	5.4e-05
WP_001888378.1|2469814_2471128_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_001888379.1|2471436_2472159_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000597952.1|2472246_2473518_+	ATP-dependent RNA helicase SrmB	NA	A0A1V0SIR5	Klosneuvirus	34.5	1.6e-53
WP_000108381.1|2473622_2475212_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	26.4	4.4e-32
WP_001888382.1|2475420_2477478_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	5.3e-14
WP_001888383.1|2477466_2477952_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_001888385.1|2477912_2478320_-	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_001883466.1|2478430_2478982_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.2	1.5e-19
WP_000932672.1|2478917_2479445_-	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_001111411.1|2479677_2481732_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_000421321.1|2481839_2482853_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_032473140.1|2482864_2483743_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_043881311.1|2483872_2485261_+|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	27.8	7.7e-49
WP_001888387.1|2485308_2486646_-	sodium-coupled multidrug efflux MATE transporter VcrM	NA	NA	NA	NA	NA
WP_000950589.1|2486688_2487108_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001883460.1|2487194_2488106_-	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_000462067.1|2488221_2490348_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000055654.1|2490710_2490980_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_000124046.1|2491121_2492060_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_001123656.1|2492059_2492458_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000192209.1|2492559_2495256_-	translation initiation factor IF-2	NA	NA	NA	NA	NA
WP_000031601.1|2495280_2496768_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000147148.1|2496786_2497242_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_019829496.1|2497672_2498008_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001281053.1|2498264_2499605_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_032473172.1|2499630_2500467_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	33.0	2.2e-19
WP_001892412.1|2500533_2502489_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.4	2.4e-120
WP_000043220.1|2502589_2503219_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_001054291.1|2503338_2503635_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_001886535.1|2503758_2505081_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
2513683:2513699	attR	ATCGTTTTCACCAATAA	NA	NA	NA	NA
>prophage 5
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	2612302	2619566	3057992		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001888660.1|2612302_2613190_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	3.2e-56
WP_001888658.1|2613457_2616046_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.9e-33
WP_000116735.1|2616139_2617147_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177561.1|2617220_2618156_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2618155_2618782_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001888657.1|2618774_2619566_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	5.0e-69
>prophage 6
NZ_CP046740	Vibrio cholerae strain 3566-06 chromosome 1, complete sequence	3057992	2913428	2921624	3057992		Micromonas_sp._RCC1109_virus(16.67%)	7	NA	NA
WP_001887557.1|2913428_2915048_-	aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.5	1.1e-11
WP_001887558.1|2915040_2916861_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.5	3.1e-26
WP_001887559.1|2916869_2918012_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	29.2	8.5e-38
WP_050501597.1|2918008_2919196_-	formyl transferase	NA	A0A220T679	Eptesipox_virus	41.9	2.0e-05
WP_032472847.1|2919167_2919590_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_019827646.1|2919586_2920468_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	68.1	4.0e-112
WP_000699461.1|2920550_2921624_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	51.2	7.6e-97
>prophage 1
NZ_CP046739	Vibrio cholerae strain 3566-06 chromosome 2, complete sequence	1051323	768606	777955	1051323	transposase	Escherichia_phage(33.33%)	6	NA	NA
WP_001217709.1|768606_769650_+	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
WP_001915158.1|769837_771019_+	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	31.8	1.2e-42
WP_001887132.1|771103_774100_+	sensor histidine kinase	NA	A0A1B5FPD5	Escherichia_phage	32.3	6.0e-75
WP_001887131.1|774099_775896_+	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	22.1	8.2e-27
WP_001887130.1|775957_776395_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.1	3.2e-17
WP_001887128.1|776560_777955_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.7e-48
>prophage 2
NZ_CP046739	Vibrio cholerae strain 3566-06 chromosome 2, complete sequence	1051323	963190	976048	1051323		Vibrio_phage(85.71%)	14	NA	NA
WP_134983484.1|963190_964390_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.7	6.5e-238
WP_080112448.1|964386_964680_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_158106819.1|964676_965957_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	94.1	3.6e-218
WP_000493022.1|965967_966216_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_032473196.1|966351_966672_-	hypothetical protein	NA	Q2PZB5	Vibrio_virus	92.5	1.0e-49
WP_005521561.1|966721_968467_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.1	0.0e+00
WP_032469109.1|968978_969320_+	helix-turn-helix transcriptional regulator	NA	A0A0F6WBJ9	Vibrio_phage	100.0	9.6e-54
WP_134983484.1|969915_971115_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.7	6.5e-238
WP_080112448.1|971111_971405_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_158106820.1|971401_972685_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.6	7.2e-219
WP_000493022.1|972695_972944_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_032473196.1|973079_973400_-	hypothetical protein	NA	Q2PZB5	Vibrio_virus	92.5	1.0e-49
WP_005521561.1|973449_975195_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.1	0.0e+00
WP_032469109.1|975706_976048_+	helix-turn-helix transcriptional regulator	NA	A0A0F6WBJ9	Vibrio_phage	100.0	9.6e-54
