The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046742	Vibrio cholerae strain 3523-03 chromosome 1, complete sequence	2924072	838593	845210	2924072		Staphylococcus_phage(66.67%)	7	NA	NA
WP_123011118.1|838593_839064_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.0	8.9e-34
WP_123011119.1|839328_840438_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|840478_841132_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_123011120.1|841136_842240_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	2.0e-44
WP_000543544.1|842265_842715_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_123011121.1|842814_844068_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.2	5.6e-99
WP_000210573.1|844076_845210_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 2
NZ_CP046742	Vibrio cholerae strain 3523-03 chromosome 1, complete sequence	2924072	1940419	1947683	2924072		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001883363.1|1940419_1941211_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
WP_057550676.1|1941203_1941830_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.5	5.7e-36
WP_095461793.1|1941829_1942765_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_123011330.1|1942838_1943846_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	7.8e-35
WP_001934677.1|1943939_1946528_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_123011331.1|1946795_1947683_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	9.2e-56
>prophage 3
NZ_CP046742	Vibrio cholerae strain 3523-03 chromosome 1, complete sequence	2924072	2179352	2186543	2924072		Faustovirus(16.67%)	9	NA	NA
WP_000775249.1|2179352_2180567_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
WP_000331703.1|2180603_2180987_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|2181047_2181371_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105750.1|2181419_2181935_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_123011365.1|2181958_2183809_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	4.1e-106
WP_001124187.1|2183822_2184161_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872174.1|2184208_2184403_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107234.1|2184621_2185911_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_001162850.1|2186114_2186543_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 1
NZ_CP046741	Vibrio cholerae strain 3523-03 chromosome 2, complete sequence	1193880	547941	619834	1193880	holin,transposase	Staphylococcus_prophage(53.85%)	106	NA	NA
WP_038964128.1|547941_548886_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_123011828.1|549138_549210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055064865.1|549241_549655_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_033928096.1|549885_550311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000090011.1|551324_551840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032482862.1|551992_552475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011650.1|552535_552670_+	superoxide dismutase	NA	NA	NA	NA	NA
WP_076025842.1|552690_553608_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	32.1	4.2e-27
WP_123011651.1|553670_553832_+	acetyltransferase	NA	NA	NA	NA	NA
WP_114721771.1|554375_554801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080479241.1|555036_555360_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_000221352.1|555618_555909_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	54.3	1.6e-17
WP_019829909.1|555898_556147_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_123011652.1|557022_557415_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_001893682.1|557607_557865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043992912.1|558044_558512_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_095467781.1|558680_559184_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
WP_000838533.1|559365_559596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123011653.1|559829_560507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011654.1|560543_561503_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_123011587.1|561741_562521_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000057239.1|562668_563625_+	DUF4263 domain-containing protein	NA	NA	NA	NA	NA
WP_123011829.1|563585_563732_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_123011640.1|563760_564165_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033932139.1|564294_564594_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_001107719.1|564590_564833_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_000578471.1|565045_565324_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
WP_076008603.1|565320_565605_-	damage-inducible protein J	NA	NA	NA	NA	NA
WP_123011656.1|565810_566479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001889218.1|566612_567011_+	VOC family protein	NA	NA	NA	NA	NA
WP_001008376.1|567180_567552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029628683.1|567710_568094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002045689.1|568252_569053_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_114807768.1|569071_569179_+	exlusion protein FxsA	NA	NA	NA	NA	NA
WP_076025899.1|569170_569617_-	BLUF domain-containing protein	NA	NA	NA	NA	NA
WP_123011657.1|570322_570577_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_123011658.1|570566_570833_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_000092503.1|571202_571817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038964128.1|571899_572844_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_123011830.1|573043_573157_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_123011654.1|573973_574933_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_095482534.1|575847_576441_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_080475875.1|576620_576944_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_123011633.1|578501_578984_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_123011660.1|579120_579666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011654.1|579717_580677_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_148039151.1|580928_581936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000248697.1|582073_582388_+	DUF4144 domain-containing protein	NA	NA	NA	NA	NA
WP_000923156.1|582698_582881_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_123011662.1|583086_584082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024700764.1|584232_584637_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_038964128.1|584685_585630_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_005526655.1|585960_586386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011664.1|586557_587295_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	28.5	9.8e-19
WP_123011665.1|587484_587796_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_000772130.1|588112_588349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069217474.1|588600_589377_+|holin	choline kinase	holin	NA	NA	NA	NA
WP_086495616.1|589593_590775_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_123011666.1|590771_590891_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_071180065.1|590974_591238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095430848.1|591459_591789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072599414.1|591818_591911_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_114710020.1|591955_592285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011654.1|592331_593291_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_080478887.1|593684_593807_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_108254100.1|593825_593864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055044996.1|594078_594372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106980.1|594357_594801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752393.1|594790_595111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000861987.1|595418_595676_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_000229320.1|595663_595966_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_043993102.1|596156_596441_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_123011667.1|596497_596626_+	acetyltransferase	NA	NA	NA	NA	NA
WP_148039152.1|596586_597498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057563745.1|597634_598069_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_057556343.1|598220_598670_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_080390558.1|598656_598785_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_032479075.1|598837_599077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011669.1|599418_600342_+	arginase	NA	A0A1V0SD83	Indivirus	20.4	7.0e-06
WP_057556343.1|600959_601409_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_080390558.1|601395_601524_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_038964128.1|601922_602867_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_086017798.1|603539_603650_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_005527200.1|604204_604759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011654.1|604792_605752_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_123011617.1|606022_606307_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000452032.1|606447_606858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114721798.1|606951_607377_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_123011671.1|607637_608570_+	Abi family protein	NA	A3QSC6	Clostridium_virus	26.8	1.7e-28
WP_123011832.1|608566_608683_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_142993951.1|609038_609245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123011673.1|609438_609672_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_123011674.1|609681_609882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038964128.1|610289_611234_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_123011834.1|611430_611589_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_123011833.1|612180_612597_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000405988.1|612757_613267_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_080480573.1|613537_613705_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_032470611.1|614199_614379_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_123011675.1|614557_615604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114763293.1|615600_615723_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_108315918.1|616022_616061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032473198.1|616266_616731_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_123011654.1|617133_618093_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
WP_001894921.1|618327_618843_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	49.4	1.0e-46
WP_123011654.1|618874_619834_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.5	4.8e-42
>prophage 2
NZ_CP046741	Vibrio cholerae strain 3523-03 chromosome 2, complete sequence	1193880	732025	738991	1193880		Vibrio_phage(90.91%)	11	NA	NA
WP_000484926.1|732025_732394_-	hypothetical protein	NA	R9TE55	Vibrio_phage	89.3	4.2e-55
WP_123011723.1|732571_732820_+	hypothetical protein	NA	O56843	Vibrio_virus	98.8	3.1e-38
WP_000502184.1|732830_733034_+	hypothetical protein	NA	C3W4P3	Vibrio_phage	100.0	2.7e-35
WP_123011724.1|733023_734127_+	replication initiation factor family protein	NA	Q8W6E3	Vibrio_phage	99.2	7.3e-220
WP_001284207.1|734131_734470_+	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	100.0	4.9e-58
WP_001143737.1|734479_734725_+	single-stranded DNA-binding protein	NA	C3W4N5	Vibrio_phage	100.0	4.3e-40
WP_123011725.1|734736_734871_+	hypothetical protein	NA	C3W4N6	Vibrio_phage	97.7	1.1e-13
WP_123011726.1|735012_736527_+	adsorption protein	NA	Q858Q8	Vibrio_phage	75.4	1.3e-102
WP_123011727.1|736528_736843_+	DUF2523 domain-containing protein	NA	Q8W6D1	Vibrio_phage	97.1	6.1e-47
WP_123011728.1|736845_738000_+	assembly protein	NA	C3W4P0	Vibrio_phage	98.2	1.2e-220
WP_123011729.1|738592_738991_-	phage protein	NA	Q858Q4	Vibrio_phage	92.6	5.5e-61
