The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	27516	57281	2503516		Staphylococcus_phage(81.48%)	33	NA	NA
WP_017464587.1|27516_27714_+	hypothetical protein	NA	S4TZT2	uncultured_phage	47.5	3.3e-06
WP_017464586.1|27889_29131_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	30.7	2.4e-46
WP_158171976.1|29637_29913_-	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	68.1	1.1e-28
WP_017464584.1|30156_30810_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.8	1.2e-09
WP_080033120.1|30905_31070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158171673.1|32057_33482_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	64.3	3.5e-174
WP_017464582.1|33471_34473_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.5	5.8e-91
WP_001829824.1|34469_34721_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.9	1.9e-35
WP_158171674.1|34779_35256_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.4	1.3e-43
WP_017464581.1|35242_36028_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_017464580.1|36258_37851_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.6	7.2e-269
WP_001829830.1|38220_39420_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002476959.1|39522_40431_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.2	5.1e-102
WP_017464578.1|40612_41449_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	4.5e-121
WP_017464577.1|41700_42054_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	33.3	5.0e-05
WP_002476956.1|42050_42416_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.9	1.8e-34
WP_002487559.1|42455_42764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002476955.1|43040_43754_+	transaldolase	NA	M1PR54	Cyanophage	36.9	1.6e-21
WP_059279942.1|43893_44337_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.3	1.8e-15
WP_002498013.1|44323_44767_-	competence protein ComK	NA	NA	NA	NA	NA
WP_017464574.1|44772_45252_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.6	4.1e-26
WP_002456441.1|45458_45674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|46051_46903_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_080395238.1|47241_48735_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	57.8	2.6e-10
WP_002440254.1|49170_50214_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.5	3.4e-134
WP_002467848.1|50220_50853_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.1e-87
WP_017464571.1|50865_52047_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	76.1	1.5e-178
WP_002474722.1|52059_52521_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	83.6	2.7e-59
WP_017464570.1|52568_53570_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.0	2.6e-131
WP_002489440.1|53812_54640_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001830809.1|55129_55531_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017464569.1|55767_56331_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	3.0e-68
WP_001830802.1|56327_57281_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
>prophage 2
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	186935	196525	2503516	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002476884.1|186935_187940_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_080033123.1|187902_188967_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002474775.1|188987_190127_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.7e-83
WP_001830800.1|190142_190403_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.3	5.7e-06
WP_017464992.1|190752_193044_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.6	1.6e-30
WP_017464636.1|193714_195988_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.6	1.1e-65
WP_002476881.1|196006_196525_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	2.8e-28
>prophage 3
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	783545	792015	2503516		Synechococcus_phage(33.33%)	9	NA	NA
WP_017464809.1|783545_784112_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	8.0e-29
WP_002476565.1|784111_785143_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.7	1.6e-64
WP_002446152.1|785135_786620_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.2e-44
WP_158171753.1|786598_788788_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.3	2.5e-139
WP_059279867.1|788780_789452_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_001831728.1|789453_789714_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002474564.1|789713_790418_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.2e-47
WP_001831674.1|790418_791546_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831735.1|791532_792015_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
>prophage 4
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	823857	863081	2503516	capsid,portal,holin,terminase,protease,integrase,head,tail,plate	uncultured_Caudovirales_phage(58.82%)	52	821805:821820	863133:863148
821805:821820	attL	ACGGAAACGGAGGGAT	NA	NA	NA	NA
WP_017464465.1|823857_824268_-|holin	phage holin	holin	A0A0N9SI57	Staphylococcus_phage	89.0	1.6e-58
WP_017464464.1|824331_824730_-	YxeA family protein	NA	A0A0N7GFH8	Staphylococcus_phage	98.5	1.4e-64
WP_002499222.1|824887_825295_-	hypothetical protein	NA	A0A0N9STL6	Staphylococcus_phage	100.0	3.3e-69
WP_158171757.1|825281_825707_-	hypothetical protein	NA	A0A0N9S016	Staphylococcus_phage	97.2	6.3e-71
WP_029376548.1|825703_826327_-	poly-gamma-glutamate hydrolase family protein	NA	A0A0N9SKG5	Staphylococcus_phage	99.0	1.2e-115
WP_017464460.1|826331_827546_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JC27	uncultured_Caudovirales_phage	99.8	3.4e-226
WP_158171758.1|827545_829408_-	DUF2817 domain-containing protein	NA	A0A0N9SJ39	Staphylococcus_phage	98.5	0.0e+00
WP_158171759.1|829589_831158_-	peptidase	NA	A0A0N9SH60	Staphylococcus_phage	98.8	1.0e-299
WP_017464456.1|831158_831992_-|tail	phage tail family protein	tail	A0A0N7GFH9	Staphylococcus_phage	99.6	1.4e-162
WP_158171760.1|831993_836490_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4J784	uncultured_Caudovirales_phage	98.2	0.0e+00
WP_157781582.1|836518_836671_-	hypothetical protein	NA	A0A0N9SKE8	Staphylococcus_phage	98.0	4.0e-20
WP_002499232.1|836703_837066_-	hypothetical protein	NA	A0A2H4J3V2	uncultured_Caudovirales_phage	100.0	3.3e-60
WP_002499233.1|837129_837315_-	hypothetical protein	NA	A0A2H4JBH1	uncultured_Caudovirales_phage	100.0	4.1e-27
WP_017464454.1|837333_837960_-|tail	phage tail protein	tail	A0A2H4J976	uncultured_Caudovirales_phage	99.5	7.5e-113
WP_017464453.1|837972_838377_-	hypothetical protein	NA	A0A2H4JC37	uncultured_Caudovirales_phage	99.3	2.1e-71
WP_002499236.1|838379_838667_-	hypothetical protein	NA	A0A2H4J5J3	uncultured_Caudovirales_phage	100.0	1.1e-47
WP_002484730.1|838780_839110_-	hypothetical protein	NA	A0A2H4J3W3	uncultured_Caudovirales_phage	99.1	1.8e-57
WP_017464452.1|839099_839441_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JDD1	uncultured_Caudovirales_phage	96.5	6.0e-56
WP_059279869.1|839459_840797_-|capsid	phage major capsid protein	capsid	A0A2H4J3W9	uncultured_Caudovirales_phage	90.7	1.3e-167
WP_017464449.1|840838_841396_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JBY8	uncultured_Caudovirales_phage	98.9	4.5e-101
WP_017464448.1|841382_842618_-|portal	phage portal protein	portal	A0A2H4J5A4	uncultured_Caudovirales_phage	96.3	2.8e-228
WP_017464447.1|842617_842812_-	hypothetical protein	NA	A0A2H4JCL3	uncultured_Caudovirales_phage	95.3	1.0e-23
WP_017464445.1|844567_845053_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J5U2	uncultured_Caudovirales_phage	100.0	1.8e-85
WP_017464444.1|845212_845563_-	HNH endonuclease	NA	A0A2H4J8X0	uncultured_Caudovirales_phage	100.0	2.3e-63
WP_002502054.1|846044_846491_-	transcriptional regulator	NA	A0A0N7GFI1	Staphylococcus_phage	98.0	2.3e-79
WP_017464442.1|846851_847154_+	hypothetical protein	NA	A0A2H4J741	uncultured_Caudovirales_phage	100.0	3.8e-46
WP_017464441.1|847250_847556_-	hypothetical protein	NA	I6SB84	Staphylococcus_virus	89.1	5.6e-45
WP_017464440.1|847623_848334_+	hypothetical protein	NA	U3PE05	Staphylococcus_phage	73.7	1.7e-97
WP_017464439.1|848315_848498_-	hypothetical protein	NA	U3PJ54	Staphylococcus_phage	75.0	2.6e-18
WP_017464438.1|848499_848847_-	hypothetical protein	NA	A0A2H4J469	uncultured_Caudovirales_phage	70.3	3.3e-17
WP_158171761.1|848869_849757_-	DnaD domain protein	NA	A0A2H4J935	uncultured_Caudovirales_phage	98.3	2.4e-112
WP_017464436.1|849791_849989_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	98.5	4.0e-28
WP_017464435.1|849985_850189_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J5F7	uncultured_Caudovirales_phage	98.5	6.8e-31
WP_017464434.1|850203_850668_-	single-stranded DNA-binding protein	NA	A0A2H4J3T1	uncultured_Caudovirales_phage	97.4	8.4e-69
WP_158171980.1|850668_851286_-	MBL fold metallo-hydrolase	NA	A0A0N9SI86	Staphylococcus_phage	96.9	1.5e-84
WP_017464432.1|851366_852290_-	recombinase RecT	NA	A0A0N9S045	Staphylococcus_phage	100.0	2.7e-143
WP_158171762.1|852291_854241_-	AAA family ATPase	NA	A0A0N9SKM4	Staphylococcus_phage	98.5	0.0e+00
WP_002499256.1|854243_854507_-	hypothetical protein	NA	A0A0N9RRW1	Staphylococcus_phage	100.0	7.7e-43
WP_017464430.1|854576_854768_-	DUF1270 family protein	NA	A0A0N9SJ68	Staphylococcus_phage	71.4	1.1e-11
WP_002502040.1|854878_855160_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	67.7	2.2e-35
WP_158171763.1|855318_855528_-	hypothetical protein	NA	A0A0N9SHA3	Staphylococcus_phage	98.6	6.3e-32
WP_002499261.1|855585_855924_+	hypothetical protein	NA	A0A2H4JGF0	uncultured_Caudovirales_phage	100.0	8.3e-58
WP_002499262.1|855909_856143_-	DUF2829 domain-containing protein	NA	A0A0N9SKI8	Staphylococcus_phage	100.0	1.6e-39
WP_049372322.1|856158_856914_-	Rha family transcriptional regulator	NA	A0A2H4J8U5	uncultured_Caudovirales_phage	99.6	5.9e-136
WP_017464429.1|856964_857519_+	hypothetical protein	NA	A0A2H4J3U5	uncultured_Caudovirales_phage	100.0	5.1e-89
WP_017464427.1|857678_857894_-	hypothetical protein	NA	A0A2H4J3T8	uncultured_Caudovirales_phage	100.0	2.6e-33
WP_158171764.1|858090_858717_+	transcriptional regulator	NA	A0A2H4J3T7	uncultured_Caudovirales_phage	95.2	1.2e-105
WP_002500135.1|858950_860090_+	CapA family protein	NA	A0A2H4JG01	uncultured_Caudovirales_phage	98.9	1.2e-220
WP_002500136.1|860298_860967_+	hypothetical protein	NA	A0A2H4J494	uncultured_Caudovirales_phage	98.2	1.1e-64
WP_002500137.1|861090_861612_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	68.2	2.8e-68
WP_002500138.1|861604_861976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002500139.1|862031_863081_+|integrase	site-specific integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	98.9	3.1e-196
863133:863148	attR	ACGGAAACGGAGGGAT	NA	NA	NA	NA
>prophage 5
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	1078420	1088851	2503516		uncultured_Caudovirales_phage(62.5%)	9	NA	NA
WP_002493501.1|1078420_1079200_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	6.7e-18
WP_017464607.1|1079196_1080156_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	98.0	9.1e-17
WP_017464606.1|1080139_1081114_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.1	4.5e-165
WP_001829597.1|1081362_1082331_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_158171785.1|1082449_1084555_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	99.6	0.0e+00
WP_002473976.1|1084517_1084916_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	99.2	1.0e-70
WP_002473943.1|1085672_1086548_+	DMT family transporter	NA	NA	NA	NA	NA
WP_001832596.1|1086561_1087062_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_002473947.1|1087345_1088851_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 6
NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2503516	2125172	2165022	2503516	protease,transposase	Staphylococcus_phage(66.67%)	38	NA	NA
WP_002477120.1|2125172_2126321_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002477121.1|2126568_2127504_+	formimidoylglutamase	NA	NA	NA	NA	NA
WP_158171916.1|2127974_2129093_+	amidohydrolase	NA	NA	NA	NA	NA
WP_158171917.1|2129189_2130071_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	44.2	3.4e-58
WP_021298942.1|2130195_2130870_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	89.3	2.1e-116
WP_020368409.1|2130989_2131901_-	metallopeptidase	NA	NA	NA	NA	NA
WP_021298942.1|2131987_2132662_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	89.3	2.1e-116
WP_000492283.1|2133412_2134792_+	tetracycline efflux MFS transporter Tet(K)	NA	NA	NA	NA	NA
WP_158171918.1|2134980_2136222_+	plasmid recombination enzyme	NA	NA	NA	NA	NA
WP_021298942.1|2137229_2137904_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	89.3	2.1e-116
WP_002494369.1|2138877_2139264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494368.1|2139423_2139873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077431438.1|2140048_2140237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494367.1|2140484_2140880_-	DUF3139 domain-containing protein	NA	NA	NA	NA	NA
WP_002511319.1|2140983_2141352_+	DUF3139 domain-containing protein	NA	NA	NA	NA	NA
WP_158171919.1|2141481_2141847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145356382.1|2142713_2143325_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_145356380.1|2143372_2144230_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_158171920.1|2144780_2145989_-	recombinase	NA	NA	NA	NA	NA
WP_002494373.1|2146443_2146896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494371.1|2147486_2147861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021298942.1|2147975_2148650_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	89.3	2.1e-116
WP_017464755.1|2149216_2149804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017464756.1|2150109_2151411_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_002457260.1|2151707_2152220_+	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_017464758.1|2153327_2154917_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002474475.1|2155021_2155552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059224240.1|2155853_2156489_+	HAD-IA family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.7	1.6e-09
WP_002438441.1|2156506_2156695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830056.1|2157013_2157199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017464759.1|2157195_2157552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002474431.1|2157950_2159327_+	amino acid permease	NA	NA	NA	NA	NA
WP_002498836.1|2159449_2160322_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017464760.1|2160335_2161760_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002438451.1|2161772_2162660_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_059279760.1|2162656_2163709_-	DUF871 domain-containing protein	NA	NA	NA	NA	NA
WP_080033104.1|2163888_2164236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017464762.1|2164275_2165022_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
