assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	1	172673-172757	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	AGACAAGGCAAGTTGGGGTTCGGGGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA,NA|60aa|down_6|NZ_CP043847.1_180531_180711_-,NA|47aa|down_8|NZ_CP043847.1_181444_181585_+	NA|308aa|up_9|NZ_CP043847.1_161557_162481_+	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|434aa|up_8|NZ_CP043847.1_162640_163942_+	PRK01490, tig, trigger factor; Provisional	NA|421aa|up_7|NZ_CP043847.1_164228_165491_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|196aa|up_6|NZ_CP043847.1_165602_166190_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|449aa|up_5|NZ_CP043847.1_166359_167706_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|271aa|up_4|NZ_CP043847.1_167727_168540_+	COG0755, CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|309aa|up_3|NZ_CP043847.1_168593_169520_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|227aa|up_2|NZ_CP043847.1_169553_170234_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|325aa|up_1|NZ_CP043847.1_170223_171198_+	PRK09283, PRK09283, porphobilinogen synthase	NA|428aa|up_0|NZ_CP043847.1_171221_172505_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|356aa|down_0|NZ_CP043847.1_172853_173921_+	pfam05145, AbrB, Transition state regulatory protein AbrB	NA|187aa|down_1|NZ_CP043847.1_174087_174648_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|877aa|down_2|NZ_CP043847.1_174990_177621_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|422aa|down_3|NZ_CP043847.1_177631_178897_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|237aa|down_4|NZ_CP043847.1_179080_179791_+	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain	NA|227aa|down_5|NZ_CP043847.1_179787_180468_+	PRK00024, PRK00024, DNA repair protein RadC	NA|60aa|down_6|NZ_CP043847.1_180531_180711_-	NA	NA|162aa|down_7|NZ_CP043847.1_180875_181361_+	pfam16284, DUF4930, Domain of unknown function (DUF4930)	NA|47aa|down_8|NZ_CP043847.1_181444_181585_+	NA	NA|283aa|down_9|NZ_CP043847.1_181981_182830_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	2	204029-204109	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	CAGAGCAAGTTGGGACTAGGGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|28aa|up_5|NZ_CP043847.1_196594_196678_-,NA|48aa|down_3|NZ_CP043847.1_207536_207680_+	NA|87aa|up_9|NZ_CP043847.1_190142_190403_+	pfam02699, YajC, Preprotein translocase subunit	NA|764aa|up_8|NZ_CP043847.1_190752_193044_+	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|758aa|up_7|NZ_CP043847.1_193714_195988_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|173aa|up_6|NZ_CP043847.1_196006_196525_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|28aa|up_5|NZ_CP043847.1_196594_196678_-	NA	NA|730aa|up_4|NZ_CP043847.1_197046_199236_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|151aa|up_3|NZ_CP043847.1_199249_199702_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|292aa|up_2|NZ_CP043847.1_199698_200574_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|425aa|up_1|NZ_CP043847.1_200945_202220_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|589aa|up_0|NZ_CP043847.1_202222_203989_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|259aa|down_0|NZ_CP043847.1_204602_205379_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|427aa|down_1|NZ_CP043847.1_205571_206852_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|down_2|NZ_CP043847.1_206928_207351_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|48aa|down_3|NZ_CP043847.1_207536_207680_+	NA	NA|332aa|down_4|NZ_CP043847.1_207879_208875_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|down_5|NZ_CP043847.1_209119_210262_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|down_6|NZ_CP043847.1_210261_211380_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_7|NZ_CP043847.1_211542_212211_+	sd00006, TPR, Tetratricopeptide repeat	NA|811aa|down_8|NZ_CP043847.1_212212_214645_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_9|NZ_CP043847.1_214973_217604_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	3	1127646-1127737	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	GAATTTCTCGGTGAAATTCTCTTTGTTGGGGCC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|31aa|up_9|NZ_CP043847.1_1117959_1118052_-,NA|33aa|up_2|NZ_CP043847.1_1126072_1126171_+,NA|157aa|up_0|NZ_CP043847.1_1126891_1127362_-,NA|90aa|down_2|NZ_CP043847.1_1129930_1130200_+,NA|101aa|down_6|NZ_CP043847.1_1134576_1134879_-	NA|31aa|up_9|NZ_CP043847.1_1117959_1118052_-	NA	NA|280aa|up_8|NZ_CP043847.1_1118193_1119033_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|450aa|up_7|NZ_CP043847.1_1119274_1120624_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|391aa|up_6|NZ_CP043847.1_1120860_1122033_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|651aa|up_5|NZ_CP043847.1_1122406_1124359_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|307aa|up_4|NZ_CP043847.1_1124364_1125285_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|253aa|up_3|NZ_CP043847.1_1125281_1126040_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|33aa|up_2|NZ_CP043847.1_1126072_1126171_+	NA	NA|161aa|up_1|NZ_CP043847.1_1126295_1126778_-	TIGR00011, Putative_Cys-tRNAPro/Cys-tRNACys_deacylase_EbsC, Cys-tRNA(Pro) deacylase	NA|157aa|up_0|NZ_CP043847.1_1126891_1127362_-	NA	NA|388aa|down_0|NZ_CP043847.1_1127742_1128906_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|208aa|down_1|NZ_CP043847.1_1129310_1129934_+	COG4330, COG4330, Predicted membrane protein [Function unknown]	NA|90aa|down_2|NZ_CP043847.1_1129930_1130200_+	NA	NA|458aa|down_3|NZ_CP043847.1_1130249_1131623_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|519aa|down_4|NZ_CP043847.1_1131817_1133374_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|316aa|down_5|NZ_CP043847.1_1133506_1134454_-	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|101aa|down_6|NZ_CP043847.1_1134576_1134879_-	NA	NA|309aa|down_7|NZ_CP043847.1_1134891_1135818_-	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|148aa|down_8|NZ_CP043847.1_1136038_1136482_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|565aa|down_9|NZ_CP043847.1_1136724_1138419_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	4	1429633-1429715	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	CAGTGAAATTCTCTTTGTTGGGACCC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|222aa|up_9|NZ_CP043847.1_1420396_1421062_+,NA|33aa|up_1|NZ_CP043847.1_1429171_1429270_-,NA|126aa|up_0|NZ_CP043847.1_1429223_1429601_+,NA|87aa|down_3|NZ_CP043847.1_1432160_1432421_+,NA|64aa|down_7|NZ_CP043847.1_1435178_1435370_+	NA|222aa|up_9|NZ_CP043847.1_1420396_1421062_+	NA	NA|301aa|up_8|NZ_CP043847.1_1421187_1422090_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|463aa|up_7|NZ_CP043847.1_1422398_1423787_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|255aa|up_6|NZ_CP043847.1_1423908_1424673_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|260aa|up_5|NZ_CP043847.1_1424801_1425581_+	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|190aa|up_4|NZ_CP043847.1_1426025_1426595_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|up_3|NZ_CP043847.1_1426609_1428133_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|208aa|up_2|NZ_CP043847.1_1428381_1429005_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|33aa|up_1|NZ_CP043847.1_1429171_1429270_-	NA	NA|126aa|up_0|NZ_CP043847.1_1429223_1429601_+	NA	NA|197aa|down_0|NZ_CP043847.1_1429965_1430556_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|222aa|down_1|NZ_CP043847.1_1430576_1431242_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|85aa|down_2|NZ_CP043847.1_1431684_1431939_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|87aa|down_3|NZ_CP043847.1_1432160_1432421_+	NA	NA|81aa|down_4|NZ_CP043847.1_1432796_1433039_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|170aa|down_5|NZ_CP043847.1_1433083_1433593_-	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|99aa|down_6|NZ_CP043847.1_1433615_1433912_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|64aa|down_7|NZ_CP043847.1_1435178_1435370_+	NA	NA|366aa|down_8|NZ_CP043847.1_1435602_1436700_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|68aa|down_9|NZ_CP043847.1_1436711_1436915_-	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	5	1678565-1678648	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	AAGGCAAGTTGGGGTTCGGGGCCCC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA,NA	NA|453aa|up_9|NZ_CP043847.1_1669205_1670564_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|180aa|up_8|NZ_CP043847.1_1671030_1671570_+	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain	NA|301aa|up_7|NZ_CP043847.1_1671698_1672601_+	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|322aa|up_6|NZ_CP043847.1_1672600_1673566_+	PRK07066, PRK07066, L-carnitine dehydrogenase	NA|163aa|up_5|NZ_CP043847.1_1673562_1674051_+	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|396aa|up_4|NZ_CP043847.1_1674185_1675373_+	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter	NA|212aa|up_3|NZ_CP043847.1_1675369_1676005_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|320aa|up_2|NZ_CP043847.1_1676023_1676983_+	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|216aa|up_1|NZ_CP043847.1_1676985_1677633_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|253aa|up_0|NZ_CP043847.1_1677673_1678432_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|522aa|down_0|NZ_CP043847.1_1678736_1680302_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|down_1|NZ_CP043847.1_1680466_1681399_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|down_2|NZ_CP043847.1_1681421_1682423_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|75aa|down_3|NZ_CP043847.1_1682907_1683132_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|143aa|down_4|NZ_CP043847.1_1683235_1683664_+	PRK04101, PRK04101, metallothiol transferase FosB	NA|292aa|down_5|NZ_CP043847.1_1683771_1684647_+	COG2503, COG2503, Predicted secreted acid phosphatase [General function prediction only]	NA|322aa|down_6|NZ_CP043847.1_1684933_1685899_+	PRK06256, PRK06256, biotin synthase; Validated	NA|368aa|down_7|NZ_CP043847.1_1686203_1687307_+	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|321aa|down_8|NZ_CP043847.1_1687322_1688285_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|192aa|down_9|NZ_CP043847.1_1688339_1688915_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit
GCF_009769125.1_ASM976912v1	NZ_CP043847	Staphylococcus epidermidis strain NCCP 16828 chromosome, complete genome	6	2144251-2144362	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	TATAAGTGACTTAATTTACAAAATGTCCCT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|129aa|up_7|NZ_CP043847.1_2138877_2139264_+,NA|150aa|up_6|NZ_CP043847.1_2139423_2139873_-,NA|63aa|up_5|NZ_CP043847.1_2140048_2140237_+,NA|122aa|up_2|NZ_CP043847.1_2141481_2141847_+,NA|125aa|down_2|NZ_CP043847.1_2147486_2147861_-,NA|196aa|down_4|NZ_CP043847.1_2149216_2149804_+,NA|177aa|down_8|NZ_CP043847.1_2155021_2155552_-	NA|414aa|up_9|NZ_CP043847.1_2134980_2136222_+	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|225aa|up_8|NZ_CP043847.1_2137229_2137904_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|129aa|up_7|NZ_CP043847.1_2138877_2139264_+	NA	NA|150aa|up_6|NZ_CP043847.1_2139423_2139873_-	NA	NA|63aa|up_5|NZ_CP043847.1_2140048_2140237_+	NA	NA|132aa|up_4|NZ_CP043847.1_2140484_2140880_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|123aa|up_3|NZ_CP043847.1_2140983_2141352_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|122aa|up_2|NZ_CP043847.1_2141481_2141847_+	NA	NA|204aa|up_1|NZ_CP043847.1_2142713_2143325_+	pfam01381, HTH_3, Helix-turn-helix	NA|286aa|up_0|NZ_CP043847.1_2143372_2144230_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|403aa|down_0|NZ_CP043847.1_2144780_2145989_-	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|151aa|down_1|NZ_CP043847.1_2146443_2146896_+	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional	NA|125aa|down_2|NZ_CP043847.1_2147486_2147861_-	NA	NA|225aa|down_3|NZ_CP043847.1_2147975_2148650_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|196aa|down_4|NZ_CP043847.1_2149216_2149804_+	NA	NA|434aa|down_5|NZ_CP043847.1_2150109_2151411_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|171aa|down_6|NZ_CP043847.1_2151707_2152220_+	pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-like protein	NA|530aa|down_7|NZ_CP043847.1_2153327_2154917_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|177aa|down_8|NZ_CP043847.1_2155021_2155552_-	NA	NA|212aa|down_9|NZ_CP043847.1_2155853_2156489_+	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW
