assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009791435.1_ASM979143v1	NZ_CP046938	Pediococcus pentosaceus strain GDIAS001 chromosome, complete genome	1	466138-466635	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,csn2,cas3	csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Unclear	GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGANTGTTAAATCAATAAGTTCAAGTAC	36,36,36	0	0	NA	NA	NA:NA:NA	6,7,7	7	Unclear	csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|131aa|up_7|NZ_CP046938.1_452889_453282_-,NA|219aa|up_5|NZ_CP046938.1_454367_455024_+,NA	NA|605aa|up_9|NZ_CP046938.1_448800_450615_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_8|NZ_CP046938.1_450747_452301_+	PRK00074, guaA, GMP synthase; Reviewed	NA|131aa|up_7|NZ_CP046938.1_452889_453282_-	NA	NA|105aa|up_6|NZ_CP046938.1_453444_453759_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|219aa|up_5|NZ_CP046938.1_454367_455024_+	NA	NA|845aa|up_4|NZ_CP046938.1_456604_459139_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|209aa|up_3|NZ_CP046938.1_459188_459815_-	pfam09726, Macoilin, Macoilin family	cas1|302aa|up_2|NZ_CP046938.1_464251_465157_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP046938.1_465134_465440_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP046938.1_465436_466108_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|217aa|down_0|NZ_CP046938.1_466767_467418_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP046938.1_467602_467887_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|540aa|down_2|NZ_CP046938.1_467914_469534_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP046938.1_469877_471710_+	pfam13520, AA_permease_2, Amino acid permease	NA|387aa|down_4|NZ_CP046938.1_471860_473021_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|218aa|down_5|NZ_CP046938.1_473035_473689_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	cas3|440aa|down_6|NZ_CP046938.1_473721_475041_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|144aa|down_7|NZ_CP046938.1_475280_475712_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NZ_CP046938.1_475842_476397_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|787aa|down_9|NZ_CP046938.1_476557_478918_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_009791435.1_ASM979143v1	NZ_CP046938	Pediococcus pentosaceus strain GDIAS001 chromosome, complete genome	2	681733-681838	2	CRISPRCasFinder	no		csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|63aa|up_6|NZ_CP046938.1_669593_669782_+,NA|244aa|down_1|NZ_CP046938.1_685593_686325_-	NA|282aa|up_9|NZ_CP046938.1_665907_666753_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|121aa|up_8|NZ_CP046938.1_666752_667115_+	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|740aa|up_7|NZ_CP046938.1_667169_669389_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP046938.1_669593_669782_+	NA	NA|89aa|up_5|NZ_CP046938.1_669927_670194_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP046938.1_670193_671918_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP046938.1_671990_672764_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|392aa|up_2|NZ_CP046938.1_672853_674029_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NZ_CP046938.1_674078_675095_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|345aa|up_0|NZ_CP046938.1_675108_676143_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|578aa|down_0|NZ_CP046938.1_683790_685524_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|244aa|down_1|NZ_CP046938.1_685593_686325_-	NA	NA|397aa|down_2|NZ_CP046938.1_686497_687688_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|489aa|down_3|NZ_CP046938.1_687762_689229_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|188aa|down_4|NZ_CP046938.1_689275_689839_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|211aa|down_5|NZ_CP046938.1_689831_690464_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_6|NZ_CP046938.1_690809_693227_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|562aa|down_7|NZ_CP046938.1_693430_695116_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_8|NZ_CP046938.1_695124_695844_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|280aa|down_9|NZ_CP046938.1_695866_696706_-	cd01171, YXKO-related, B
GCF_009791435.1_ASM979143v1	NZ_CP046938	Pediococcus pentosaceus strain GDIAS001 chromosome, complete genome	3	1754219-1754331	3	CRISPRCasFinder	no	csa3	csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Type I-A	TGACTTCCTGAATCTAACTGTTGAACGCC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA,NA	NA|438aa|up_9|NZ_CP046938.1_1743299_1744613_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|327aa|up_8|NZ_CP046938.1_1744605_1745586_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|373aa|up_7|NZ_CP046938.1_1745588_1746707_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|329aa|up_6|NZ_CP046938.1_1746718_1747705_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|448aa|up_5|NZ_CP046938.1_1747985_1749329_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|461aa|up_4|NZ_CP046938.1_1749343_1750726_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|238aa|up_3|NZ_CP046938.1_1750885_1751599_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|164aa|up_2|NZ_CP046938.1_1751634_1752126_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|43aa|up_1|NZ_CP046938.1_1752159_1752288_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|212aa|up_0|NZ_CP046938.1_1752547_1753183_-	pfam15983, DUF4767, Domain of unknown function (DUF4767)	csa3|107aa|down_0|NZ_CP046938.1_1756785_1757106_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|168aa|down_1|NZ_CP046938.1_1757197_1757701_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|288aa|down_2|NZ_CP046938.1_1757720_1758584_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|280aa|down_3|NZ_CP046938.1_1758786_1759626_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|602aa|down_4|NZ_CP046938.1_1760044_1761850_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|371aa|down_5|NZ_CP046938.1_1761992_1763105_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|279aa|down_6|NZ_CP046938.1_1763258_1764095_+	pfam05067, Mn_catalase, Manganese containing catalase	NA|242aa|down_7|NZ_CP046938.1_1764147_1764873_-	pfam00563, EAL, EAL domain	NA|401aa|down_8|NZ_CP046938.1_1764869_1766072_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|477aa|down_9|NZ_CP046938.1_1766752_1768183_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
