The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047059	Vibrio cholerae isolate CTMA_1441 chromosome 1, complete sequence	2983109	648845	655462	2983109		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|648845_649979_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_001890340.1|649987_651241_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|651340_651790_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|651815_652919_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|652923_653577_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|653617_654727_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|654991_655462_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP047059	Vibrio cholerae isolate CTMA_1441 chromosome 1, complete sequence	2983109	1505376	1537867	2983109		Vibrio_phage(47.37%)	25	NA	NA
WP_001161489.1|1505376_1505544_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170632.1|1505536_1505704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265358.1|1506742_1507309_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|1507470_1509039_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_001881265.1|1509043_1509328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1509457_1510150_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1510227_1510395_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1510387_1510972_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1511461_1511800_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1511925_1513005_+	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_080033393.1|1512982_1513360_+	hypothetical protein	NA	F1CC65	Vibrio_virus	98.4	1.3e-67
WP_000053920.1|1513453_1513678_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000693566.1|1514189_1514528_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1514653_1515733_+	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001890610.1|1515710_1516094_+	hypothetical protein	NA	F1CC65	Vibrio_virus	100.0	4.8e-70
WP_000493022.1|1516228_1516477_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001881237.1|1516487_1517771_+	hypothetical protein	NA	A0A142I701	Vibrio_phage	100.0	9.1e-222
WP_000979342.1|1517767_1518061_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1518057_1519257_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1519348_1520125_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000593519.1|1520121_1520496_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_080032810.1|1520953_1534516_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1534500_1534962_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000514481.1|1534987_1535347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|1535761_1537867_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 3
NZ_CP047059	Vibrio cholerae isolate CTMA_1441 chromosome 1, complete sequence	2983109	2195766	2202959	2983109		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2195766_2196195_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2196398_2197688_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2197907_2198102_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2198150_2198489_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2198502_2200353_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2200376_2200892_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2200940_2201264_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2201324_2201708_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2201744_2202959_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_CP047059	Vibrio cholerae isolate CTMA_1441 chromosome 1, complete sequence	2983109	2330115	2389525	2983109	transposase,protease	uncultured_virus(42.86%)	48	NA	NA
WP_001920874.1|2330115_2331615_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_000546748.1|2331604_2332360_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.9	5.5e-33
WP_001918292.1|2332490_2334056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000805082.1|2334146_2337839_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_000735886.1|2337841_2338870_-	conjugal transfer protein TraU	NA	NA	NA	NA	NA
WP_001189235.1|2338853_2339978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001911240.1|2339988_2340408_-	TrhF	NA	NA	NA	NA	NA
WP_001044650.1|2340484_2340832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000648042.1|2340824_2343224_-	type IV secretion system protein TraC	NA	NA	NA	NA	NA
WP_001228926.1|2343223_2343916_-	DsbC family protein	NA	NA	NA	NA	NA
WP_000356587.1|2344047_2344986_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_000095578.1|2344978_2345770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180223.1|2345990_2346377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001944091.1|2346373_2346946_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA	NA
WP_000647305.1|2347020_2348310_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_001911237.1|2348312_2349209_-	conjugal transfer protein TraK	NA	NA	NA	NA	NA
WP_000667170.1|2349192_2349819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000433891.1|2349815_2350097_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
WP_001145752.1|2350132_2350372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001167482.1|2350385_2350973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000033757.1|2350999_2351635_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
WP_000546514.1|2351621_2352182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000661888.1|2352191_2354012_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_000475916.1|2354060_2356211_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_001125250.1|2356332_2357148_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_000158025.1|2357182_2357953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000279702.1|2357979_2360031_-|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_000567536.1|2360069_2362373_-	PglZ domain-containing protein	NA	NA	NA	NA	NA
WP_000779609.1|2362385_2366126_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_000152592.1|2366130_2369820_-	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_001115853.1|2369832_2370381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000653856.1|2370364_2371165_-	DUF1819 family protein	NA	NA	NA	NA	NA
WP_000180270.1|2371182_2372103_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_000284114.1|2372420_2372720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196209.1|2372807_2373713_-	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.4	3.1e-06
WP_000182836.1|2374096_2374354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000116661.1|2374352_2374802_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	4.1e-36
WP_001883756.1|2374809_2375079_+	hypothetical protein	NA	A0A218MNF2	uncultured_virus	76.3	9.3e-28
WP_001122813.1|2375792_2377004_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_001043260.1|2378818_2379634_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_001082316.1|2379694_2380498_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
WP_000480968.1|2380497_2381334_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001120891.1|2381305_2381845_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001255015.1|2381956_2382262_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000214119.1|2382289_2383504_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
WP_001447541.1|2383720_2384605_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001120888.1|2384635_2386129_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000985631.1|2386546_2389525_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP047059	Vibrio cholerae isolate CTMA_1441 chromosome 1, complete sequence	2983109	2532403	2539666	2983109		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2532403_2533291_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2533558_2536147_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2536239_2537247_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2537320_2538256_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2538255_2538882_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001883363.1|2538874_2539666_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
