assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009806715.1_ASM980671v1	NZ_CP047112	Proteus mirabilis strain SCBX1.1 chromosome, complete genome	1	202521-202616	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	Orphan	ATAGCTTAGAAAAATAAGTACTAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	NA,NA|83aa|down_1|NZ_CP047112.1_202937_203186_-	NA|113aa|up_9|NZ_CP047112.1_190931_191270_+	PRK11027, PRK11027, hypothetical protein; Provisional	NA|511aa|up_8|NZ_CP047112.1_191317_192850_-	PRK09862, PRK09862, ATP-dependent protease	NA|34aa|up_7|NZ_CP047112.1_193294_193396_+	PRK10424, PRK10424, ilv operon leader peptide	NA|550aa|up_6|NZ_CP047112.1_193525_195175_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|93aa|up_5|NZ_CP047112.1_195171_195450_+	PRK11152, ilvM, acetolactate synthase 2 small subunit	NA|309aa|up_4|NZ_CP047112.1_195460_196387_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|617aa|up_3|NZ_CP047112.1_196459_198310_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|525aa|up_2|NZ_CP047112.1_198313_199888_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|296aa|up_1|NZ_CP047112.1_199873_200761_-	PRK11716, PRK11716, HTH-type transcriptional activator IlvY	NA|492aa|up_0|NZ_CP047112.1_200933_202409_+	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated	NA|90aa|down_0|NZ_CP047112.1_202667_202937_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|83aa|down_1|NZ_CP047112.1_202937_203186_-	NA	NA|674aa|down_2|NZ_CP047112.1_203358_205380_+	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional	NA|503aa|down_3|NZ_CP047112.1_205454_206963_-	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA|433aa|down_4|NZ_CP047112.1_206966_208265_-	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	NA|109aa|down_5|NZ_CP047112.1_208384_208711_+	PRK09381, trxA, thioredoxin TrxA	NA|420aa|down_6|NZ_CP047112.1_209272_210532_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|364aa|down_7|NZ_CP047112.1_210926_212018_+	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA|353aa|down_8|NZ_CP047112.1_212041_213100_+	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein	NA|377aa|down_9|NZ_CP047112.1_213230_214361_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
GCF_009806715.1_ASM980671v1	NZ_CP047112	Proteus mirabilis strain SCBX1.1 chromosome, complete genome	2	2535963-2536137	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	NA,NA|115aa|down_2|NZ_CP047112.1_2538709_2539054_-,NA|271aa|down_4|NZ_CP047112.1_2539745_2540558_-,NA|107aa|down_5|NZ_CP047112.1_2540526_2540847_-,NA|165aa|down_6|NZ_CP047112.1_2540852_2541347_-,NA|153aa|down_8|NZ_CP047112.1_2543735_2544194_-,NA|151aa|down_9|NZ_CP047112.1_2544253_2544706_-	NA|221aa|up_9|NZ_CP047112.1_2524928_2525591_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|187aa|up_8|NZ_CP047112.1_2525675_2526236_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_7|NZ_CP047112.1_2526298_2527156_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_6|NZ_CP047112.1_2527342_2527921_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|419aa|up_5|NZ_CP047112.1_2528632_2529889_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP047112.1_2530242_2532681_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP047112.1_2532692_2533310_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP047112.1_2533313_2534090_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP047112.1_2534205_2534748_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP047112.1_2535316_2535496_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP047112.1_2536876_2537533_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP047112.1_2537529_2538717_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP047112.1_2538709_2539054_-	NA	NA|231aa|down_3|NZ_CP047112.1_2539050_2539743_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP047112.1_2539745_2540558_-	NA	NA|107aa|down_5|NZ_CP047112.1_2540526_2540847_-	NA	NA|165aa|down_6|NZ_CP047112.1_2540852_2541347_-	NA	NA|768aa|down_7|NZ_CP047112.1_2541349_2543653_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|153aa|down_8|NZ_CP047112.1_2543735_2544194_-	NA	NA|151aa|down_9|NZ_CP047112.1_2544253_2544706_-	NA
GCF_009806715.1_ASM980671v1	NZ_CP047112	Proteus mirabilis strain SCBX1.1 chromosome, complete genome	3	2536287-2536394	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	NA,NA|115aa|down_2|NZ_CP047112.1_2538709_2539054_-,NA|271aa|down_4|NZ_CP047112.1_2539745_2540558_-,NA|107aa|down_5|NZ_CP047112.1_2540526_2540847_-,NA|165aa|down_6|NZ_CP047112.1_2540852_2541347_-,NA|153aa|down_8|NZ_CP047112.1_2543735_2544194_-,NA|151aa|down_9|NZ_CP047112.1_2544253_2544706_-	NA|221aa|up_9|NZ_CP047112.1_2524928_2525591_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|187aa|up_8|NZ_CP047112.1_2525675_2526236_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_7|NZ_CP047112.1_2526298_2527156_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_6|NZ_CP047112.1_2527342_2527921_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|419aa|up_5|NZ_CP047112.1_2528632_2529889_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP047112.1_2530242_2532681_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP047112.1_2532692_2533310_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP047112.1_2533313_2534090_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP047112.1_2534205_2534748_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP047112.1_2535316_2535496_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP047112.1_2536876_2537533_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP047112.1_2537529_2538717_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP047112.1_2538709_2539054_-	NA	NA|231aa|down_3|NZ_CP047112.1_2539050_2539743_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP047112.1_2539745_2540558_-	NA	NA|107aa|down_5|NZ_CP047112.1_2540526_2540847_-	NA	NA|165aa|down_6|NZ_CP047112.1_2540852_2541347_-	NA	NA|768aa|down_7|NZ_CP047112.1_2541349_2543653_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|153aa|down_8|NZ_CP047112.1_2543735_2544194_-	NA	NA|151aa|down_9|NZ_CP047112.1_2544253_2544706_-	NA
GCF_009806715.1_ASM980671v1	NZ_CP047112	Proteus mirabilis strain SCBX1.1 chromosome, complete genome	4	2944169-2944311	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	NA|240aa|up_7|NZ_CP047112.1_2935063_2935783_-,NA|49aa|up_1|NZ_CP047112.1_2942387_2942534_+,NA|76aa|up_0|NZ_CP047112.1_2942534_2942762_+,NA	NA|300aa|up_9|NZ_CP047112.1_2932990_2933890_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|325aa|up_8|NZ_CP047112.1_2934092_2935067_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|240aa|up_7|NZ_CP047112.1_2935063_2935783_-	NA	NA|245aa|up_6|NZ_CP047112.1_2936006_2936741_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP047112.1_2936831_2937455_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP047112.1_2937622_2938483_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP047112.1_2938574_2938946_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP047112.1_2939116_2941714_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP047112.1_2942387_2942534_+	NA	NA|76aa|up_0|NZ_CP047112.1_2942534_2942762_+	NA	NA|476aa|down_0|NZ_CP047112.1_2956760_2958188_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|624aa|down_1|NZ_CP047112.1_2958389_2960261_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP047112.1_2960273_2962940_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|257aa|down_3|NZ_CP047112.1_2963103_2963874_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP047112.1_2964200_2964743_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP047112.1_2964953_2965397_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP047112.1_2965495_2966599_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP047112.1_2966595_2967795_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP047112.1_2968072_2968687_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP047112.1_2968689_2969442_+	PRK05287, PRK05287, cell division protein ZapD
GCF_009806715.1_ASM980671v1	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	1	129219-129764	1	CRISPRCasFinder	no			Orphan	ATACTGCATCAACGACGACCTTT	23	0	0	NA	NA	NA	8	8	Orphan	DEDDh,c2c9_V-U4,RT,cas3,DinG,PD-DExK,csa3	NA|351aa|up_6|NZ_CP047114.1_124529_125582_-,NA|119aa|up_5|NZ_CP047114.1_125745_126102_-,NA|142aa|up_4|NZ_CP047114.1_126118_126544_-,NA|99aa|up_3|NZ_CP047114.1_126540_126837_-,NA|76aa|up_1|NZ_CP047114.1_127928_128156_-,NA|164aa|down_0|NZ_CP047114.1_130330_130822_-,NA|140aa|down_4|NZ_CP047114.1_133609_134029_+,NA|153aa|down_5|NZ_CP047114.1_134364_134823_-,NA|185aa|down_7|NZ_CP047114.1_135847_136402_+,NA|187aa|down_8|NZ_CP047114.1_136398_136959_+,NA|280aa|down_9|NZ_CP047114.1_136958_137798_+	NA|349aa|up_9|NZ_CP047114.1_121229_122276_-	COG1475, Spo0J, Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]	NA|421aa|up_8|NZ_CP047114.1_122627_123890_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|139aa|up_7|NZ_CP047114.1_123889_124306_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|351aa|up_6|NZ_CP047114.1_124529_125582_-	NA	NA|119aa|up_5|NZ_CP047114.1_125745_126102_-	NA	NA|142aa|up_4|NZ_CP047114.1_126118_126544_-	NA	NA|99aa|up_3|NZ_CP047114.1_126540_126837_-	NA	NA|279aa|up_2|NZ_CP047114.1_126833_127670_-	PRK02951, PRK02951, DNA replication terminus site-binding protein; Provisional	NA|76aa|up_1|NZ_CP047114.1_127928_128156_-	NA	NA|279aa|up_0|NZ_CP047114.1_128158_128995_-	pfam01051, Rep_3, Initiator Replication protein	NA|164aa|down_0|NZ_CP047114.1_130330_130822_-	NA	NA|127aa|down_1|NZ_CP047114.1_130832_131213_-	pfam10784, Plasmid_stab_B, Plasmid stability protein	NA|320aa|down_2|NZ_CP047114.1_131217_132177_-	pfam06406, StbA, StbA protein	NA|271aa|down_3|NZ_CP047114.1_132473_133286_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|140aa|down_4|NZ_CP047114.1_133609_134029_+	NA	NA|153aa|down_5|NZ_CP047114.1_134364_134823_-	NA	NA|183aa|down_6|NZ_CP047114.1_135309_135858_+	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|185aa|down_7|NZ_CP047114.1_135847_136402_+	NA	NA|187aa|down_8|NZ_CP047114.1_136398_136959_+	NA	NA|280aa|down_9|NZ_CP047114.1_136958_137798_+	NA
