assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009832845.1_ASM983284v1	NZ_CP047120	Streptococcus pyogenes strain 1085 chromosome, complete genome	1	250195-250328	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	GAAAAAGAGTTAGAAGAGAAAAAGGAAGCTCTTGAATTAGCGATAGACCA	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA|118aa|up_8|NZ_CP047120.1_239197_239551_+,NA|84aa|up_1|NZ_CP047120.1_247070_247322_+,NA	NA|99aa|up_9|NZ_CP047120.1_238824_239121_+	pfam14131, DUF4298, Domain of unknown function (DUF4298)	NA|118aa|up_8|NZ_CP047120.1_239197_239551_+	NA	NA|423aa|up_7|NZ_CP047120.1_239973_241242_+	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|225aa|up_6|NZ_CP047120.1_241228_241903_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|406aa|up_5|NZ_CP047120.1_241915_243133_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|218aa|up_4|NZ_CP047120.1_243226_243880_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_3|NZ_CP047120.1_243876_245265_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|542aa|up_2|NZ_CP047120.1_245366_246992_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|84aa|up_1|NZ_CP047120.1_247070_247322_+	NA	NA|531aa|up_0|NZ_CP047120.1_247997_249590_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|416aa|down_0|NZ_CP047120.1_251459_252707_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|304aa|down_1|NZ_CP047120.1_252895_253807_+	pfam03482, SIC, sic protein repeat	NA|1182aa|down_2|NZ_CP047120.1_256026_259572_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|428aa|down_3|NZ_CP047120.1_259668_260952_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|307aa|down_4|NZ_CP047120.1_261187_262108_+	cd01017, AdcA, Metal binding protein AdcA	NA|826aa|down_5|NZ_CP047120.1_262120_264598_+	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|67aa|down_6|NZ_CP047120.1_264767_264968_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|down_7|NZ_CP047120.1_265047_265674_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|down_8|NZ_CP047120.1_265657_266461_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|down_9|NZ_CP047120.1_266472_267294_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_009832845.1_ASM983284v1	NZ_CP047120	Streptococcus pyogenes strain 1085 chromosome, complete genome	2	253309-253440	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	ATTAGGTACAGGGTATGAAAAACGTGATGATTGGGGAGGACCTGG	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA|84aa|up_3|NZ_CP047120.1_247070_247322_+,NA	NA|423aa|up_9|NZ_CP047120.1_239973_241242_+	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|225aa|up_8|NZ_CP047120.1_241228_241903_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|406aa|up_7|NZ_CP047120.1_241915_243133_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|218aa|up_6|NZ_CP047120.1_243226_243880_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_5|NZ_CP047120.1_243876_245265_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|542aa|up_4|NZ_CP047120.1_245366_246992_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|84aa|up_3|NZ_CP047120.1_247070_247322_+	NA	NA|531aa|up_2|NZ_CP047120.1_247997_249590_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|492aa|up_1|NZ_CP047120.1_249774_251250_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|416aa|up_0|NZ_CP047120.1_251459_252707_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1182aa|down_0|NZ_CP047120.1_256026_259572_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|428aa|down_1|NZ_CP047120.1_259668_260952_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|307aa|down_2|NZ_CP047120.1_261187_262108_+	cd01017, AdcA, Metal binding protein AdcA	NA|826aa|down_3|NZ_CP047120.1_262120_264598_+	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|67aa|down_4|NZ_CP047120.1_264767_264968_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|down_5|NZ_CP047120.1_265047_265674_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|down_6|NZ_CP047120.1_265657_266461_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|down_7|NZ_CP047120.1_266472_267294_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_8|NZ_CP047120.1_267290_268268_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|543aa|down_9|NZ_CP047120.1_268380_270009_-	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCF_009832845.1_ASM983284v1	NZ_CP047120	Streptococcus pyogenes strain 1085 chromosome, complete genome	3	702513-702874	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	 Type I-U?,Type I-C,Type I-U	GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	31,31,32	4	4	702611-702644|702545-702579|702612-702644|702743-702775	NZ_CP047120.1_1534558-1534591|NZ_CP047120.1_1544467-1544501|NZ_CP047120.1_1534559-1534591|NZ_CP047120.1_1195642-1195674	I-C:I-C:I-C	5,5,5	5	TypeI-U,TypeI-C,TypeI-U?	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA,NA	NA|67aa|up_9|NZ_CP047120.1_690780_690981_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|NZ_CP047120.1_690977_691541_+	pfam13671, AAA_33, AAA domain	NA|883aa|up_7|NZ_CP047120.1_691542_694191_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_CP047120.1_694344_696753_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP047120.1_696885_697614_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP047120.1_697613_699509_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_CP047120.1_699513_700362_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_CP047120.1_700363_701038_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP047120.1_701034_702060_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP047120.1_702070_702364_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_CP047120.1_703033_703744_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_CP047120.1_703756_704380_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_CP047120.1_704422_705529_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_CP047120.1_705615_706356_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_CP047120.1_706352_708086_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_CP047120.1_708158_709238_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_CP047120.1_709251_709968_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_CP047120.1_710134_710608_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_CP047120.1_710749_711430_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_CP047120.1_711703_712939_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_009832845.1_ASM983284v1	NZ_CP047120	Streptococcus pyogenes strain 1085 chromosome, complete genome	4	995198-995298	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA|63aa|up_8|NZ_CP047120.1_985057_985246_+,NA|262aa|up_6|NZ_CP047120.1_986582_987368_-,NA	NA|252aa|up_9|NZ_CP047120.1_984081_984837_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|63aa|up_8|NZ_CP047120.1_985057_985246_+	NA	NA|205aa|up_7|NZ_CP047120.1_985836_986451_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_CP047120.1_986582_987368_-	NA	NA|233aa|up_5|NZ_CP047120.1_987377_988076_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_CP047120.1_988075_988447_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_CP047120.1_988630_991741_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_CP047120.1_991820_992834_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_CP047120.1_992896_994399_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_CP047120.1_994616_995174_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_CP047120.1_995349_997164_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_CP047120.1_997359_997695_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_CP047120.1_997800_998442_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_CP047120.1_998451_999081_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_CP047120.1_999096_999933_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_CP047120.1_1000302_1001076_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_CP047120.1_1001444_1002680_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_CP047120.1_1002799_1004122_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_CP047120.1_1004650_1006969_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_CP047120.1_1007332_1007581_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009832845.1_ASM983284v1	NZ_CP047120	Streptococcus pyogenes strain 1085 chromosome, complete genome	5	1188636-1189199	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	3	6	1188870-1188899|1188936-1188965|1188936-1188965|1188936-1188965|1188936-1188965|1189002-1189031	NZ_CP047120.1_1544093-1544064|NZ_CP047120.1_456169-456198|NZ_CP047120.1_1196833-1196804|NZ_CP047120.1_1276236-1276207|NZ_CP047120.1_1523432-1523403|NZ_CP047120.1_465885-465856	II-A:II-A:II-A	8,8,3	8	Orphan	cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA,NA|61aa|down_0|NZ_CP047120.1_1189273_1189456_-,NA|84aa|down_2|NZ_CP047120.1_1190304_1190556_+,NA|80aa|down_3|NZ_CP047120.1_1190819_1191059_+,NA|119aa|down_4|NZ_CP047120.1_1191116_1191473_+,NA|99aa|down_7|NZ_CP047120.1_1193089_1193386_-,NA|211aa|down_8|NZ_CP047120.1_1193396_1194029_-	NA|263aa|up_9|NZ_CP047120.1_1177097_1177886_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|NZ_CP047120.1_1177889_1179539_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|NZ_CP047120.1_1179674_1180502_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|NZ_CP047120.1_1180498_1181308_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|NZ_CP047120.1_1181324_1181816_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|NZ_CP047120.1_1181834_1182260_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|NZ_CP047120.1_1182466_1183486_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|NZ_CP047120.1_1183615_1184053_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|578aa|up_1|NZ_CP047120.1_1184238_1185972_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|611aa|up_0|NZ_CP047120.1_1186159_1187992_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|61aa|down_0|NZ_CP047120.1_1189273_1189456_-	NA	NA|70aa|down_1|NZ_CP047120.1_1189654_1189864_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|down_2|NZ_CP047120.1_1190304_1190556_+	NA	NA|80aa|down_3|NZ_CP047120.1_1190819_1191059_+	NA	NA|119aa|down_4|NZ_CP047120.1_1191116_1191473_+	NA	NA|403aa|down_5|NZ_CP047120.1_1191588_1192797_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|62aa|down_6|NZ_CP047120.1_1192907_1193093_-	pfam16945, Phage_r1t_holin, Putative lactococcus lactis phage r1t holin	NA|99aa|down_7|NZ_CP047120.1_1193089_1193386_-	NA	NA|211aa|down_8|NZ_CP047120.1_1193396_1194029_-	NA	NA|143aa|down_9|NZ_CP047120.1_1194031_1194460_-	pfam07761, DUF1617, Protein of unknown function (DUF1617)
