The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	279	22928	4582546	integrase,portal,plate,transposase,tRNA,tail	Shigella_phage(30.0%)	31	9035:9048	32448:32461
WP_000332303.1|279_1011_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	50.5	2.7e-53
WP_000373101.1|1231_1636_+	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
WP_032082692.1|1688_1799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001295666.1|2332_2656_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	65.4	3.0e-41
WP_000943927.1|2758_2923_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	4.2e-23
WP_000557907.1|3156_3990_-	5-methylcytosine-specific restriction enzyme A	NA	NA	NA	NA	NA
WP_000905001.1|4096_4651_-	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	88.3	2.8e-87
WP_010723096.1|5059_5473_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	53.6	7.1e-27
WP_000548498.1|5444_6047_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	83.5	9.2e-92
WP_000554707.1|6046_6835_-|tail	tail fiber protein	tail	U5P0I1	Shigella_phage	94.4	2.7e-51
WP_000383574.1|6838_7423_-	YmfQ family protein	NA	O22003	Shigella_phage	98.5	2.0e-112
WP_001350503.1|7413_8205_-|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	97.3	4.7e-144
WP_001350502.1|8131_8605_-|portal	phage portal protein	portal	A0A1B5FP95	Escherichia_phage	100.0	3.6e-75
WP_000605606.1|8604_8787_-	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
WP_000104929.1|8798_10166_-	GntR family transcriptional regulator	NA	A0A1C9IIA1	Salmonella_phage	99.2	5.1e-223
9035:9048	attL	TCGCCGCTTCCAGC	NA	NA	NA	NA
WP_001250269.1|10155_10335_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000515837.1|10510_11068_-	protein YmfL	NA	S5FXP0	Shigella_phage	95.7	7.4e-96
WP_000649480.1|11111_11312_-	transcriptional regulator	NA	U5P445	Shigella_phage	98.5	1.9e-30
WP_000848748.1|11402_12077_+	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
WP_001005353.1|12251_12560_+	hypothetical protein	NA	I6PDF6	Cronobacter_phage	80.0	3.8e-09
WP_010723095.1|12497_12839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011443584.1|12955_13267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000939945.1|13303_13549_+	excisionase-like protein from lambdoid prophage 14	NA	NA	NA	NA	NA
WP_085947771.1|14497_15660_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_077626120.1|15744_15918_+|integrase	integrase	integrase	O21927	Phage_21	76.0	6.8e-16
WP_001257372.1|16008_16902_-	cell death peptidase Lit	NA	NA	NA	NA	NA
WP_000241967.1|18062_18728_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000444484.1|19221_20472_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	1.9e-22
WP_001248691.1|20643_21297_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000476093.1|21306_21768_+	phosphatase NudJ	NA	NA	NA	NA	NA
WP_001297484.1|21821_22928_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
32448:32461	attR	GCTGGAAGCGGCGA	NA	NA	NA	NA
>prophage 2
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	607790	640818	4582546	terminase,protease,lysis,transposase	Enterobacteria_phage(53.85%)	30	NA	NA
WP_001300563.1|607790_608903_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000956455.1|608979_609132_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
WP_001130654.1|609584_610703_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_000682509.1|610768_611017_+	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
WP_000360951.1|611081_611450_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000351487.1|611543_612197_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_001153148.1|612304_613552_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000786319.1|613632_615009_-	phenylalanine transporter	NA	NA	NA	NA	NA
WP_000573945.1|615110_618254_-	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	NA	S5VTK5	Leptospira_phage	22.1	2.2e-59
WP_000717157.1|618265_619489_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB	NA	NA	NA	NA	NA
WP_000709870.1|619504_619837_-	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF	NA	NA	NA	NA	NA
WP_000074234.1|619994_621368_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC	NA	NA	NA	NA	NA
WP_000770953.1|621524_622208_+	copper response regulator transcription factor CusR	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
WP_000253839.1|622197_623640_+	Cu(+)/Ag(+) sensor histidine kinase CusS	NA	A0A1V0SGX0	Hokovirus	26.2	3.0e-11
WP_000383932.1|623789_626027_+	phage adsorption protein NrfB	NA	NA	NA	NA	NA
WP_000662357.1|626013_628986_+	phage receptor	NA	NA	NA	NA	NA
WP_001224604.1|628986_629877_+	DUF4434 family protein	NA	NA	NA	NA	NA
WP_001177471.1|630059_630821_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001201845.1|631334_632288_+|protease	omptin family outer membrane protease OmpT	protease	NA	NA	NA	NA
WP_026089880.1|634178_634805_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001027248.1|634859_635603_-|terminase	phage terminase large subunit family protein	terminase	K7PMH7	Enterobacteria_phage	93.1	4.1e-73
WP_000453566.1|635577_636123_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	4.0e-94
WP_001421937.1|636511_636706_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
WP_001031427.1|636870_637077_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_000079503.1|637362_637773_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	98.5	1.2e-71
WP_000738500.1|638063_638357_+	serum resistance lipoprotein Bor	NA	A0A2R2X2B2	Escherichia_phage	97.9	5.7e-47
WP_001228697.1|638447_638630_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	78.3	1.4e-16
WP_001135281.1|638846_639344_-	lysozyme	NA	M1FJA0	Enterobacteria_phage	98.2	1.1e-90
WP_000839596.1|639343_639559_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_010723085.1|639801_640818_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
>prophage 3
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	823489	863086	4582546	transposase	Streptococcus_phage(16.67%)	41	NA	NA
WP_159172251.1|823489_824715_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.8e-177
WP_000012218.1|824778_825222_+	transferase	NA	NA	NA	NA	NA
WP_000596084.1|825223_825997_+	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_001141271.1|826184_826460_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA	NA
WP_000842106.1|826494_827604_+	S-(hydroxymethyl)glutathione dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.6	8.9e-32
WP_000419081.1|827697_828531_+	S-formylglutathione hydrolase FrmB	NA	NA	NA	NA	NA
WP_001096705.1|828754_829294_-	DUF2058 domain-containing protein	NA	NA	NA	NA	NA
WP_000107627.1|829395_830607_-	3-(3-hydroxy-phenyl)propionate transporter	NA	NA	NA	NA	NA
WP_001013499.1|831184_832198_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.1	1.2e-43
WP_000044314.1|832194_833145_-	acetaldehyde dehydrogenase (acetylating)	NA	G9E526	Ostreococcus_lucimarinus_virus	35.2	8.7e-36
WP_074442156.1|833141_833501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159172252.1|833708_834743_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.7	3.2e-185
WP_001254938.1|837068_838220_-|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	8.9e-43
WP_000770246.1|838640_839534_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001065553.1|839862_840726_+	GTPase family protein	NA	NA	NA	NA	NA
WP_000197389.1|840817_841639_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	39.4	7.2e-47
WP_001548158.1|842042_842270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000824223.1|842269_842713_+	lipoprotein, inner membrane; degP regulator; CP4-6 prophage	NA	NA	NA	NA	NA
WP_001547765.1|842735_843203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000194654.1|843279_843519_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
WP_000211838.1|843616_844075_+	antirestriction protein	NA	A9J566	Pseudomonas_phage	32.8	2.0e-14
WP_000811693.1|844090_844567_+	RadC family protein	NA	NA	NA	NA	NA
WP_000691994.1|844575_844797_+	DUF987 domain-containing protein	NA	NA	NA	NA	NA
WP_000070395.1|844815_845133_+	type IV toxin-antitoxin system antitoxin YafW	NA	NA	NA	NA	NA
WP_000854672.1|845153_845495_+	type IV toxin-antitoxin system toxin YkfI	NA	NA	NA	NA	NA
WP_000893278.1|846066_847320_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
WP_001285288.1|847331_848435_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_001352368.1|849188_850397_+|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
WP_001339197.1|851370_852579_+|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_000189532.1|852951_854196_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001291990.1|854287_854746_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001292994.1|855006_856464_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_001326471.1|856520_857057_-	peptide chain release factor H	NA	NA	NA	NA	NA
WP_001295202.1|856989_857256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059892.1|857561_858014_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001263489.1|858023_858422_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA	NA
WP_000554758.1|858424_858718_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
WP_001226164.1|858769_859825_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_001333407.1|859895_860666_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001334802.1|860625_862365_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
WP_000006255.1|862588_863086_-|transposase	REP-associated tyrosine transposase RayT	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	2889156	2896295	4582546		Escherichia_phage(83.33%)	6	NA	NA
WP_001278994.1|2889156_2889795_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_001393459.1|2889886_2891053_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	60.6	1.1e-120
WP_000848004.1|2891049_2891958_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	4.3e-117
WP_001300386.1|2892153_2892921_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
WP_001141337.1|2892971_2893628_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	4.7e-49
WP_001272928.1|2893733_2896295_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 5
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	3270059	3281266	4582546	integrase,tail	Enterobacteria_phage(53.33%)	16	3266369:3266385	3283276:3283292
3266369:3266385	attL	GGTTGTCGATACCAATA	NA	NA	NA	NA
WP_001163428.1|3270059_3270260_-	response regulator inhibitor TorI	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
WP_000206809.1|3270391_3270697_-	hypothetical protein	NA	U5P0J0	Shigella_phage	96.0	2.2e-49
WP_001242717.1|3270696_3271059_-	phage protein	NA	K7PH61	Enterobacteria_phage	99.1	2.0e-65
WP_000008183.1|3271049_3271586_-	5'-deoxynucleotidase	NA	K7PKJ9	Enterobacteria_phage	98.9	3.7e-100
WP_000081278.1|3271713_3272538_-	YfdQ family protein	NA	K7PJQ6	Enterobacteria_phage	99.3	7.8e-150
WP_000135673.1|3272603_3272966_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	99.2	1.9e-60
WP_000128175.1|3273323_3273692_+	hypothetical protein	NA	U5P0A0	Shigella_phage	99.2	1.3e-69
WP_001393497.1|3273688_3274183_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	98.1	1.2e-86
WP_000066913.1|3274182_3274458_+	phage N-6-adenine-methyltransferase	NA	Q8SBE9	Shigella_phage	100.0	2.6e-49
WP_011443597.1|3274507_3275026_+	hypothetical protein	NA	M1FN94	Enterobacteria_phage	68.8	4.6e-39
WP_001106835.1|3275052_3275493_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	70.1	9.5e-54
WP_047792215.1|3275791_3276073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159172256.1|3277429_3278353_-	glycosyltransferase	NA	M1FQW5	Enterobacteria_phage	90.4	7.1e-160
WP_000915541.1|3278349_3278712_-	GtrA family protein	NA	U5P0S6	Shigella_phage	88.3	1.0e-53
WP_000958671.1|3278864_3280022_-|integrase	prophage integrase IntS	integrase	A5VW56	Enterobacteria_phage	100.0	5.7e-223
WP_000368140.1|3280333_3281266_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	99.0	2.5e-165
3283276:3283292	attR	GGTTGTCGATACCAATA	NA	NA	NA	NA
>prophage 6
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	4099142	4118353	4582546	tail,lysis	Enterobacteria_phage(40.91%)	35	NA	NA
WP_000379575.1|4099142_4099298_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
WP_000448564.1|4099464_4099872_-	helix-turn-helix domain-containing protein	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
WP_000920568.1|4099955_4100186_+	dicB transcriptional regulator DicC	NA	NA	NA	NA	NA
WP_011443592.1|4100482_4100632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001301033.1|4101068_4101401_-	protein FlxA	NA	NA	NA	NA	NA
WP_001326990.1|4101603_4101909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534858.1|4101933_4102173_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_000323025.1|4102172_4102460_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000813254.1|4102531_4102687_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000980994.1|4102903_4103155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304870.1|4103221_4103500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265198.1|4103501_4104551_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
WP_001047135.1|4104564_4105317_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
WP_120795389.1|4105594_4105684_-	Qin prophage; protein YnfS	NA	NA	NA	NA	NA
WP_000087756.1|4105738_4105951_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_000066484.1|4106251_4106467_+	cold shock-like protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
WP_000839590.1|4107220_4107436_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
WP_000189916.1|4107440_4107752_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
WP_001092971.1|4107748_4108282_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
WP_001071769.1|4108278_4108776_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
WP_000066495.1|4109138_4109351_+	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_071524604.1|4109361_4109550_+	cold-shock protein	NA	NA	NA	NA	NA
WP_120795388.1|4109552_4109618_+	Qin prophage; protein YnfR	NA	NA	NA	NA	NA
WP_001309517.1|4109696_4109852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019606.1|4110023_4110197_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_000373090.1|4110348_4110759_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001368374.1|4110816_4111050_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
WP_000453612.1|4111438_4112008_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	1.5e-91
WP_001027733.1|4111958_4112921_+|tail	tail fiber protein	tail	K7PHC9	Enterobacteria_phage	70.9	4.1e-41
WP_000885611.1|4112920_4113496_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_000078177.1|4113593_4114184_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|4114500_4114734_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|4114802_4114916_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000347482.1|4115520_4116804_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_000527743.1|4116892_4118353_+	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	4.3e-42
>prophage 7
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	4310905	4341236	4582546	integrase,transposase,tRNA,lysis,tail	Escherichia_phage(44.83%)	34	4320184:4320202	4348208:4348226
WP_000837921.1|4310905_4312039_+	porin OmpN	NA	Q1MVN1	Enterobacteria_phage	58.5	1.1e-117
WP_001300461.1|4312179_4312614_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
WP_001157926.1|4312879_4313053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_120795384.1|4313392_4313506_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836770.1|4313574_4313808_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	87.0	5.4e-32
WP_000086527.1|4314124_4314715_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_001698950.1|4314812_4315388_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	2.5e-102
WP_071885698.1|4315387_4318750_-	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	36.4	8.1e-12
WP_046613426.1|4319072_4320053_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.8	4.4e-184
4320184:4320202	attL	GCTTATTCGCACCTTCCCT	NA	NA	NA	NA
WP_000091628.1|4321818_4322178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001350510.1|4322158_4322422_-	ParB N-terminal domain-containing protein	NA	A0A0R6PD10	Moraxella_phage	56.1	6.3e-21
WP_001097895.1|4322559_4324017_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA	NA
WP_001228696.1|4324213_4324399_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.2	2.8e-15
WP_000450663.1|4324486_4325047_-	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	88.1	1.9e-67
WP_000788970.1|4325069_4325816_-	ATP-binding protein	NA	V5UQI5	Shigella_phage	78.9	3.8e-111
WP_000899748.1|4325822_4326680_-	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	84.5	8.3e-70
WP_000693797.1|4326692_4327115_-	phage protein	NA	A0A0U2RXZ9	Escherichia_phage	95.0	1.5e-69
WP_000712069.1|4327137_4327434_-	toxin YdaS	NA	A0A0R6PH31	Moraxella_phage	44.9	9.6e-10
WP_000948459.1|4327557_4328034_+	DNA-binding transcriptional repressor RacR	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	2.2e-11
WP_001169151.1|4328487_4328643_+	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_046613436.1|4328639_4329128_-	superinfection exclusion protein B	NA	NA	NA	NA	NA
WP_000560225.1|4329569_4329791_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	97.3	4.9e-35
WP_001352098.1|4329790_4329961_+	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000632297.1|4330035_4330311_+	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_000105143.1|4330412_4333013_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	5.1e-248
WP_000166319.1|4333005_4333815_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_001317028.1|4333871_4334066_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
WP_000276809.1|4334058_4334268_+	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_000079604.1|4334346_4334562_+	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000040852.1|4334563_4335799_+|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
WP_001157406.1|4335850_4336786_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000123737.1|4336914_4338288_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
WP_000387388.1|4338765_4339749_-	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000628058.1|4340003_4341236_+	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
4348208:4348226	attR	AGGGAAGGTGCGAATAAGC	NA	NA	NA	NA
>prophage 8
NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4582546	4418609	4486537	4582546	integrase,portal,terminase,protease,head,transposase,lysis,tail	Enterobacteria_phage(86.36%)	74	4438347:4438406	4486724:4487745
WP_000422045.1|4418609_4419659_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
WP_000559286.1|4419878_4420637_+	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	4.4e-06
WP_001278906.1|4420633_4421224_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_001291217.1|4421263_4422139_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA	NA
WP_001326916.1|4422349_4424245_-	DUF2207 domain-containing protein	NA	NA	NA	NA	NA
WP_001295575.1|4424272_4424893_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_001285661.1|4424889_4425771_-	5'-3' exoribonuclease	NA	NA	NA	NA	NA
WP_001700591.1|4425908_4425953_+	trp operon leader peptide	NA	NA	NA	NA	NA
WP_001194610.1|4426044_4427607_+	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_000763511.1|4427606_4429202_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
WP_159172260.1|4429205_4430507_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	42.1	6.1e-32
WP_000209520.1|4430518_4431712_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_000443067.1|4431711_4432518_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_000807651.1|4432898_4433078_+	general stress protein	NA	NA	NA	NA	NA
WP_001056490.1|4433163_4433664_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_001079505.1|4433709_4434216_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_000737226.1|4434275_4434914_-	outer membrane protein OmpW	NA	NA	NA	NA	NA
WP_000028545.1|4435270_4436014_+	UPF0259 family protein	NA	NA	NA	NA	NA
WP_000808667.1|4436043_4436583_+	septation protein A	NA	NA	NA	NA	NA
WP_000108160.1|4436687_4437086_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA	NA
WP_001360141.1|4437125_4437845_-	TonB system transport protein TonB	NA	NA	NA	NA	NA
WP_000967595.1|4438068_4438365_+	YciI family protein	NA	NA	NA	NA	NA
4438347:4438406	attL	ATTTAAGAAAGTGTTCTGAATAGAGATTCAATATTTAAGGGCACGGTTTTTGCAACCGTG	NA	NA	NA	NA
WP_001143750.1|4439399_4442408_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	64.4	0.0e+00
WP_001235704.1|4442571_4443123_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	81.8	1.7e-76
WP_159172259.1|4443138_4443591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001470895.1|4445051_4445234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000121907.1|4445580_4446447_-	2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase	NA	NA	NA	NA	NA
WP_000543457.1|4446464_4447409_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_001007407.1|4447410_4449075_-	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA	NA
WP_001310587.1|4449151_4450099_+	DNA-binding transcriptional activator MhpR	NA	NA	NA	NA	NA
WP_000805902.1|4450175_4451258_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
WP_000177853.1|4451380_4454362_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	100.0	0.0e+00
WP_000291549.1|4454413_4455667_+	lactose permease	NA	NA	NA	NA	NA
WP_001335915.1|4455732_4456344_+	galactoside O-acetyltransferase	NA	NA	NA	NA	NA
WP_001301263.1|4456446_4457628_-	cyanate transporter CynX	NA	NA	NA	NA	NA
WP_000118199.1|4457633_4459061_-	cyanase	NA	K7PGW9	Enterobacteria_phage	99.7	2.3e-181
WP_001018610.1|4459128_4459461_-|head	head decoration protein	head	E4WL24	Enterobacteria_phage	100.0	9.0e-57
WP_000929806.1|4459470_4460814_-	S49 family peptidase	NA	E4WL22	Enterobacteria_phage	100.0	1.3e-215
WP_000701345.1|4460794_4462387_-|portal	phage portal protein	portal	E4WL21	Enterobacteria_phage	100.0	1.3e-310
WP_000235412.1|4462383_4462590_-|head,tail	head-tail joining protein	head,tail	E4WL20	Enterobacteria_phage	100.0	5.8e-30
WP_001027236.1|4462589_4464512_-|terminase	phage terminase large subunit family protein	terminase	E4WL19	Enterobacteria_phage	100.0	0.0e+00
WP_000453624.1|4464486_4465032_-|terminase	terminase small subunit	terminase	E4WL18	Enterobacteria_phage	100.0	1.2e-95
WP_000509882.1|4465279_4466008_-	hypothetical protein	NA	M9NZE9	Enterobacteria_phage	100.0	8.7e-121
WP_001446081.1|4466398_4466995_+	hypothetical protein	NA	M9NZJ1	Enterobacteria_phage	100.0	9.7e-110
WP_001064347.1|4467066_4467585_-	Rha family transcriptional regulator	NA	Q38450	Enterobacteria_phage	100.0	2.9e-94
WP_012305470.1|4467783_4468242_-|lysis	lysis protein	lysis	M9NYX9	Enterobacteria_phage	100.0	2.2e-77
WP_001070143.1|4468238_4468733_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	100.0	1.3e-91
WP_000286101.1|4468710_4468935_-	hypothetical protein	NA	M9NZI9	Enterobacteria_phage	100.0	1.9e-34
WP_001047620.1|4469413_4470223_-	antitermination protein	NA	M9NZB0	Enterobacteria_phage	100.0	2.3e-154
WP_085903671.1|4470222_4470339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048813386.1|4470335_4470542_-	hypothetical protein	NA	M9NZE6	Enterobacteria_phage	100.0	2.4e-36
WP_001231139.1|4470538_4471180_-	protein ninG	NA	M9NYX8	Enterobacteria_phage	100.0	2.4e-114
WP_000063208.1|4471172_4471841_-	serine/threonine protein phosphatase	NA	M9P0E4	Enterobacteria_phage	100.0	2.3e-131
WP_000106777.1|4471837_4472008_-	NinE family protein	NA	K7P7K0	Enterobacteria_phage	100.0	1.1e-23
WP_000586532.1|4472007_4472463_-	hypothetical protein	NA	K7P7B8	Enterobacteria_phage	100.0	5.7e-86
WP_000838083.1|4473466_4474156_-	hypothetical protein	NA	M9NYX7	Enterobacteria_phage	100.0	8.8e-131
WP_000072106.1|4474152_4475061_-	replication protein	NA	K7PGZ0	Enterobacteria_phage	100.0	1.2e-159
WP_000555791.1|4475146_4475689_-	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	100.0	1.6e-95
WP_000608751.1|4475719_4475941_-	helix-turn-helix domain-containing protein	NA	M9NZA8	Enterobacteria_phage	100.0	3.5e-33
WP_000244936.1|4476004_4476769_+	helix-turn-helix transcriptional regulator	NA	M9NZE3	Enterobacteria_phage	100.0	1.9e-134
WP_000432054.1|4476905_4477772_+	hypothetical protein	NA	M9NYX6	Enterobacteria_phage	100.0	3.5e-153
WP_000362427.1|4477802_4478012_-	hypothetical protein	NA	G8C7T7	Escherichia_phage	87.5	7.0e-23
WP_032180615.1|4478572_4478866_+	hypothetical protein	NA	M9P0E2	Enterobacteria_phage	99.0	2.0e-47
WP_001281305.1|4479021_4479231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000607102.1|4479387_4479597_+	cell division protein FtsZ	NA	M9NZE2	Enterobacteria_phage	100.0	4.7e-35
WP_000448252.1|4479607_4480444_+	zf-TFIIB domain-containing protein	NA	M9NYX5	Enterobacteria_phage	100.0	6.2e-155
WP_000005775.1|4480548_4481517_+	hypothetical protein	NA	M9P0E1	Enterobacteria_phage	100.0	1.8e-97
WP_000995354.1|4481524_4481806_+	host nuclease inhibitor GamL	NA	M9NZI3	Enterobacteria_phage	100.0	1.3e-48
WP_000059964.1|4481815_4482733_+	recombinase RecT	NA	M9NZA6	Enterobacteria_phage	100.0	1.1e-171
WP_000187057.1|4482729_4483410_+	YqaJ viral recombinase family protein	NA	M9NZE1	Enterobacteria_phage	100.0	1.3e-131
WP_000831730.1|4483406_4483835_+	hypothetical protein	NA	M9NYX4	Enterobacteria_phage	100.0	9.5e-75
WP_000148438.1|4483831_4483984_+	DUF1317 family protein	NA	NA	NA	NA	NA
WP_024168593.1|4484868_4485108_+	DUF4060 family protein	NA	M9P0E0	Enterobacteria_phage	100.0	1.1e-37
WP_000627155.1|4485343_4486537_-|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	100.0	1.3e-235
4486724:4487745	attR	ATTTAAGAAAGTGTTCTGAATAGAGATTCAATATTTAAGGGCACGGTTTTTGCAACCGTGTTCTTGTTTGGCCTTTCCTTATAGCCGGTCAGTGCATTCACCACCACAAGCAGATAATAACTTTATCTGTATTTCTTTATATGATGTGAGCATATTCAGGAAAAATGACCTTTCCTGAGGTACAGTTGCTCGCTCAAATCCTTTGATTACTGCGGATAAAGTCATCTACTATTGTTTAACACATTCACGCGCTGCATGTATGTTCAGAAAATGTGCACGCTAAGATAATTAAACAAAATTGTGGTTACAGAGGTATCAGTGAGTCACTGGGCTACATTCAAACAAACAGCAACAAATTTATGGGTGACCCTTCGGCACGACATTCTCGCGCTGGCCGTCTTTTTAAATGGATTGCTTATTTTTAAAACAATCTATGGTATGTCGGTCAATTTGCTTGATATTTTCCATATCAAAGCATTTTCAGAGTTGGATCTCTCCTTGCTGGCAAACGCCCCACTCTTTATGCTCGGCGTCTTTCTTGTCCTGAACTCCATTGGCTTACTGTTCCGGGCAAAGCTCGCATGGGCAATCAGTATCATTTTGTTGTTGATAGCGCTAATTTACACCCTGCATTTTTATCCCTGGCTGAAATTTAGTATTGGATTTTGCATTTTTACGCTGGTGTTTTTGCTGATACTGCGCAAAGACTTCTCCCACAGTAGCGCCGCAGCCGGGACAATTTTTGCATTTATTAGTTTCACGACATTACTGTTTTACTCAACCTACGGTGCGCTTTATTTAAGCGAAGGTTTTAATCCGCGAATAGAAAGTTTGATGACCGCGTTCTATTTTTCGATAGAAACCATGTCAACCGTCGGCTATGGCGATATTGTCCCTGTTTCTGAATCAGCACGATTGTTCACTATTTCGGTCATTATTTCCGGCATTACCGTTTTTGCCACATCTATGACCTCAATTTTTGGTCCGCTTATCCGCGGGGGATTCAACAAACTTGTAAAAGG	NA	NA	NA	NA
>prophage 1
NZ_CP047128	Escherichia coli K-12 plasmid pT-HNK130-3, complete sequence	85943	20981	66040	85943	transposase,integrase	Escherichia_phage(35.29%)	39	34690:34749	57407:57894
WP_000090707.1|20981_21824_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000351437.1|21810_23934_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001049180.1|23933_25382_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_001324699.1|25422_26979_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000262423.1|26990_27917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097216.1|28269_28569_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001239419.1|29132_30959_+	AAA family ATPase	NA	E5E3R2	Burkholderia_phage	22.8	4.7e-14
WP_000647571.1|31127_31478_-	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	50.5	1.8e-18
WP_000790485.1|31625_32057_-	silver-binding protein SilE	NA	NA	NA	NA	NA
WP_000555736.1|32301_33783_-	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.8e-27
WP_001067858.1|34408_35113_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
34690:34749	attL	CGGGCGCTTTATCCGTGTTGATGAATCGTGGGATCTGCCACTTCTTCACGTTGTTGAGGA	NA	NA	NA	NA
WP_000572405.1|35419_36214_-	aminoglycoside O-phosphotransferase APH(3')-IIa	NA	Q75ZG1	Hepacivirus	100.0	9.5e-153
WP_000957857.1|37792_37981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000948429.1|37990_39190_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000883925.1|39907_40342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000350011.1|41378_42479_-	plasmid replication protein	NA	NA	NA	NA	NA
WP_000127321.1|42463_42751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375812.1|42755_43322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000077458.1|43793_44777_+	ParM/StbA family protein	NA	A7KUY1	Bacillus_phage	24.4	2.1e-08
WP_000919078.1|44793_45087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000651490.1|45088_45508_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_001020646.1|45567_46119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000454193.1|47120_47471_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000845048.1|47673_48687_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001389366.1|48844_49318_+	trimethoprim-resistant dihydrofolate reductase DfrA17	NA	A0A1B2IAU3	Erwinia_phage	34.6	1.3e-16
WP_000503573.1|49448_50237_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA	NA
WP_153676274.1|51147_51879_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-133
WP_032193599.1|51908_52613_+	replication initiation protein	NA	I3WF20	Macacine_betaherpesvirus	28.7	6.4e-20
WP_000427623.1|53185_54190_-|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
WP_000105383.1|54607_56044_-	glutathione synthase	NA	NA	NA	NA	NA
WP_159172261.1|57052_57355_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A077SL39	Escherichia_phage	97.9	2.0e-47
WP_012579081.1|59885_60809_-|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	99.7	2.2e-177
57407:57894	attR	CGGGCGCTTTATCCGTGTTGATGAATCGTGGGATCTGCCACTTCTTCACGTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCG	NA	NA	NA	NA
WP_001617865.1|60888_61764_-	class A extended-spectrum beta-lactamase CTX-M-14	NA	A0A1B0VBP7	Salmonella_phage	99.6	6.1e-153
WP_001067855.1|62018_62723_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_049824851.1|62732_63203_+	TetR family transcriptional regulator	NA	A0A0R6PIB6	Moraxella_phage	32.7	5.3e-10
WP_014839978.1|63222_64011_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_014839979.1|64010_64529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839980.1|64533_64950_-	fosfomycin resistance glutathione transferase FosA3	NA	Q2LI91	Bacillus_phage	35.6	2.0e-08
WP_001067855.1|65335_66040_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
