assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	1	148746-148837	1	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|70aa|up_9|NZ_CP047127.1_137822_138032_-,NA	NA|70aa|up_9|NZ_CP047127.1_137822_138032_-	NA	NA|1321aa|up_8|NZ_CP047127.1_138086_142049_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP047127.1_142088_142727_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP047127.1_143014_144106_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP047127.1_144105_144798_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP047127.1_144809_145196_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP047127.1_145203_146004_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP047127.1_146013_146604_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP047127.1_146614_147109_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP047127.1_147129_148458_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP047127.1_149260_149857_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP047127.1_149877_150105_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP047127.1_150142_151384_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP047127.1_153192_154113_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP047127.1_154112_154418_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP047127.1_154569_155169_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP047127.1_155165_157712_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP047127.1_157711_158884_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP047127.1_159013_159706_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP047127.1_159678_160707_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	2	411036-411180	2	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP047127.1_398934_399924_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP047127.1_400320_401229_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP047127.1_401420_403442_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP047127.1_404020_404698_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP047127.1_404690_405446_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP047127.1_405432_406587_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP047127.1_406583_407624_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP047127.1_407710_409000_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP047127.1_409058_409535_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP047127.1_409686_410970_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP047127.1_411203_413465_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP047127.1_413647_415081_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP047127.1_415156_416209_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP047127.1_416392_417346_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP047127.1_417386_418382_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP047127.1_418536_419355_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP047127.1_419355_420414_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP047127.1_420416_421106_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP047127.1_421105_421879_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP047127.1_422045_422195_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	3	655331-655427	3	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP047127.1_647126_647819_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP047127.1_648038_648581_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP047127.1_649051_649918_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP047127.1_649919_650132_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP047127.1_650239_650761_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP047127.1_650796_652182_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP047127.1_652355_652850_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP047127.1_652852_653575_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP047127.1_653692_654202_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP047127.1_654198_655266_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP047127.1_655460_656354_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP047127.1_656350_657166_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP047127.1_657176_658436_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP047127.1_658445_660113_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP047127.1_660429_661479_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP047127.1_661500_662736_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP047127.1_662746_663532_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP047127.1_663759_664905_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP047127.1_664926_666228_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP047127.1_666284_667646_-	PRK08044, PRK08044, allantoinase AllB
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	4	795573-795717	4	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP047127.1_797762_797846_-	NA|357aa|up_9|NZ_CP047127.1_780711_781782_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP047127.1_781874_782456_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP047127.1_782460_784278_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP047127.1_784433_785807_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP047127.1_785882_787202_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP047127.1_787608_788904_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP047127.1_788961_789651_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP047127.1_789840_791043_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP047127.1_791039_794186_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP047127.1_794311_795496_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP047127.1_795740_796649_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP047127.1_796773_797685_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP047127.1_797762_797846_-	NA	NA|95aa|down_3|NZ_CP047127.1_798331_798616_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP047127.1_798687_799365_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP047127.1_799622_799814_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP047127.1_799863_800388_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP047127.1_800570_801029_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP047127.1_801148_801958_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP047127.1_801974_803090_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	5	1068397-1068532	1	PILER-CR	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP047127.1_1059105_1059483_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP047127.1_1059489_1060332_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP047127.1_1060409_1060889_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP047127.1_1061080_1062943_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP047127.1_1062935_1063466_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP047127.1_1063573_1064905_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP047127.1_1064961_1065249_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP047127.1_1065245_1066532_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP047127.1_1066582_1067524_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP047127.1_1067538_1068309_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP047127.1_1068779_1070294_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP047127.1_1070324_1071467_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP047127.1_1071595_1072813_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP047127.1_1072886_1074440_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP047127.1_1074548_1075334_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP047127.1_1075339_1075930_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP047127.1_1076015_1076411_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP047127.1_1076672_1079894_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP047127.1_1079911_1081060_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP047127.1_1081515_1082337_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	6	2522153-2522293	5	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP047127.1_2524747_2525818_-	NA|184aa|up_9|NZ_CP047127.1_2511874_2512426_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP047127.1_2512430_2513675_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP047127.1_2514073_2515039_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP047127.1_2515321_2516308_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP047127.1_2516386_2517079_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP047127.1_2517155_2517659_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP047127.1_2517743_2518880_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP047127.1_2519163_2519478_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP047127.1_2519474_2519891_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP047127.1_2519935_2521954_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP047127.1_2522379_2524731_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP047127.1_2524747_2525818_-	NA	NA|478aa|down_2|NZ_CP047127.1_2525951_2527385_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP047127.1_2527447_2527897_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP047127.1_2527893_2530986_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP047127.1_2531169_2532153_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP047127.1_2532371_2532704_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP047127.1_2532745_2534236_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP047127.1_2534542_2536063_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP047127.1_2536216_2536840_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	7	2849042-2849374	2,6,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|47aa|up_1|NZ_CP047127.1_2847751_2847892_-,NA	NA|434aa|up_9|NZ_CP047127.1_2838448_2839750_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP047127.1_2839797_2842032_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP047127.1_2842109_2842358_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP047127.1_2842357_2842693_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP047127.1_2842763_2843555_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP047127.1_2843782_2845420_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP047127.1_2845507_2846806_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP047127.1_2846865_2847738_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP047127.1_2847751_2847892_-	NA	NA|224aa|up_0|NZ_CP047127.1_2848030_2848702_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP047127.1_2850013_2851492_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP047127.1_2851518_2852796_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP047127.1_2853114_2853900_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP047127.1_2853969_2855424_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP047127.1_2855517_2856855_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP047127.1_2856832_2857612_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP047127.1_2857608_2858469_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP047127.1_2858616_2859192_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP047127.1_2859208_2859469_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP047127.1_2859459_2860731_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	8	2874925-2875687	3,7,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP047127.1_2863288_2865001_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP047127.1_2865075_2865810_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP047127.1_2866168_2868835_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP047127.1_2869249_2870758_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP047127.1_2870750_2871233_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP047127.1_2871245_2872337_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP047127.1_2872339_2873014_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP047127.1_2873000_2873600_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP047127.1_2873615_2874533_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP047127.1_2874534_2874819_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP047127.1_2875769_2876807_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP047127.1_2877058_2877967_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP047127.1_2877968_2879396_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP047127.1_2879395_2880001_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP047127.1_2880050_2880374_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP047127.1_2880567_2880879_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP047127.1_2880897_2881608_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP047127.1_2881607_2882087_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP047127.1_2882083_2883133_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP047127.1_2883113_2883875_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	9	3399280-3399397	8	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP047127.1_3388565_3388751_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP047127.1_3388763_3389663_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP047127.1_3389855_3391046_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP047127.1_3391042_3392302_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP047127.1_3392291_3393920_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP047127.1_3394192_3395551_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP047127.1_3395555_3396632_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP047127.1_3397094_3397745_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP047127.1_3397798_3398053_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP047127.1_3398052_3399183_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP047127.1_3399416_3401702_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP047127.1_3402397_3406150_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP047127.1_3406277_3407000_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP047127.1_3407146_3409774_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP047127.1_3409922_3411611_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP047127.1_3411607_3412231_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP047127.1_3416769_3418419_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP047127.1_3418423_3419200_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP047127.1_3419273_3420458_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP047127.1_3420488_3421811_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_009832885.1_ASM983288v1	NZ_CP047127	Escherichia coli K-12 chromosome, complete genome	10	4001241-4001364	9	CRISPRCasFinder	no	DEDDh	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP047127.1_4010260_4010350_+	NA|471aa|up_9|NZ_CP047127.1_3990695_3992108_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP047127.1_3992664_3992874_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP047127.1_3993328_3993955_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP047127.1_3993975_3996078_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP047127.1_3996081_3996729_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP047127.1_3996792_3997461_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP047127.1_3997457_3998243_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP047127.1_3998246_3999059_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP047127.1_3999070_4000675_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP047127.1_4000800_4001106_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP047127.1_4001678_4002935_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP047127.1_4002975_4004349_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP047127.1_4004563_4005205_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP047127.1_4005244_4006393_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP047127.1_4006683_4007895_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP047127.1_4008007_4008940_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP047127.1_4008936_4009962_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP047127.1_4010260_4010350_+	NA	NA|390aa|down_8|NZ_CP047127.1_4010515_4011685_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP047127.1_4011846_4012428_-	PRK10543, PRK10543, superoxide dismutase [Fe]
