assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009834225.1_ASM983422v1	NZ_CP047176	Rathayibacter sp. VKM Ac-2759 chromosome, complete genome	1	117766-117876	1	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	Orphan	GCCCAGTGCGACAACTCTTGGACACTC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	NA|66aa|up_9|NZ_CP047176.1_106285_106483_+,NA	NA|66aa|up_9|NZ_CP047176.1_106285_106483_+	NA	NA|275aa|up_8|NZ_CP047176.1_106588_107413_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|454aa|up_7|NZ_CP047176.1_107476_108838_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|407aa|up_6|NZ_CP047176.1_108834_110055_-	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C	NA|470aa|up_5|NZ_CP047176.1_110051_111461_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|553aa|up_4|NZ_CP047176.1_111457_113116_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_3|NZ_CP047176.1_113108_113909_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|320aa|up_2|NZ_CP047176.1_113934_114894_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|539aa|up_1|NZ_CP047176.1_114893_116510_-	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|up_0|NZ_CP047176.1_116784_117711_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|97aa|down_0|NZ_CP047176.1_117966_118257_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|175aa|down_1|NZ_CP047176.1_118270_118795_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|273aa|down_2|NZ_CP047176.1_118953_119772_+	pfam06724, DUF1206, Domain of Unknown Function (DUF1206)	NA|163aa|down_3|NZ_CP047176.1_119905_120394_+	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK	NA|716aa|down_4|NZ_CP047176.1_120482_122630_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|228aa|down_5|NZ_CP047176.1_122906_123590_+	PRK00024, PRK00024, DNA repair protein RadC	NA|350aa|down_6|NZ_CP047176.1_123730_124780_+	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|435aa|down_7|NZ_CP047176.1_125068_126373_+	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|258aa|down_8|NZ_CP047176.1_126518_127292_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|303aa|down_9|NZ_CP047176.1_127288_128197_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_009834225.1_ASM983422v1	NZ_CP047176	Rathayibacter sp. VKM Ac-2759 chromosome, complete genome	2	1216209-1216322	2	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	Orphan	CGAGACTCCAGGAGTTGTCGCACCGGGGCG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	NA|198aa|up_5|NZ_CP047176.1_1209393_1209987_+,NA|371aa|down_4|NZ_CP047176.1_1222433_1223546_+	NA|330aa|up_9|NZ_CP047176.1_1204596_1205586_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|523aa|up_8|NZ_CP047176.1_1205576_1207145_-	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]	NA|346aa|up_7|NZ_CP047176.1_1207273_1208311_-	cd05284, arabinose_DH_like, D-arabinose dehydrogenase	NA|274aa|up_6|NZ_CP047176.1_1208426_1209248_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|198aa|up_5|NZ_CP047176.1_1209393_1209987_+	NA	NA|526aa|up_4|NZ_CP047176.1_1210095_1211673_+	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	NA|308aa|up_3|NZ_CP047176.1_1211728_1212652_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|313aa|up_2|NZ_CP047176.1_1212687_1213626_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|312aa|up_1|NZ_CP047176.1_1213635_1214571_+	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|512aa|up_0|NZ_CP047176.1_1214637_1216173_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|595aa|down_0|NZ_CP047176.1_1216409_1218194_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|164aa|down_1|NZ_CP047176.1_1218277_1218769_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|491aa|down_2|NZ_CP047176.1_1218974_1220447_+	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|326aa|down_3|NZ_CP047176.1_1220443_1221421_+	PRK03092, PRK03092, ribose-phosphate diphosphokinase	NA|371aa|down_4|NZ_CP047176.1_1222433_1223546_+	NA	NA|409aa|down_5|NZ_CP047176.1_1223552_1224779_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|428aa|down_6|NZ_CP047176.1_1224898_1226182_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|311aa|down_7|NZ_CP047176.1_1226240_1227173_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|300aa|down_8|NZ_CP047176.1_1227172_1228072_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|550aa|down_9|NZ_CP047176.1_1228460_1230110_+	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins
GCF_009834225.1_ASM983422v1	NZ_CP047176	Rathayibacter sp. VKM Ac-2759 chromosome, complete genome	3	1528523-1528646	3	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	Orphan	ACGGGCTGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	NA,NA|187aa|down_5|NZ_CP047176.1_1533245_1533806_-,NA|264aa|down_7|NZ_CP047176.1_1535283_1536075_-,NA|489aa|down_9|NZ_CP047176.1_1537261_1538728_-	NA|210aa|up_9|NZ_CP047176.1_1519133_1519763_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|303aa|up_8|NZ_CP047176.1_1519759_1520668_+	PRK00283, xerD, tyrosine recombinase	NA|296aa|up_7|NZ_CP047176.1_1520776_1521664_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|275aa|up_6|NZ_CP047176.1_1521647_1522472_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|195aa|up_5|NZ_CP047176.1_1522461_1523046_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|332aa|up_4|NZ_CP047176.1_1523029_1524025_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|358aa|up_3|NZ_CP047176.1_1524067_1525141_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|266aa|up_2|NZ_CP047176.1_1525298_1526096_+	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed	NA|507aa|up_1|NZ_CP047176.1_1526070_1527591_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|198aa|up_0|NZ_CP047176.1_1527776_1528370_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|397aa|down_0|NZ_CP047176.1_1528912_1530103_-	pfam00589, Phage_integrase, Phage integrase family	NA|73aa|down_1|NZ_CP047176.1_1530095_1530314_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|198aa|down_2|NZ_CP047176.1_1530291_1530885_-	pfam16259, DUF4913, Domain of unknown function (DUF4913)	NA|159aa|down_3|NZ_CP047176.1_1530896_1531373_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|596aa|down_4|NZ_CP047176.1_1531461_1533249_-	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|187aa|down_5|NZ_CP047176.1_1533245_1533806_-	NA	NA|494aa|down_6|NZ_CP047176.1_1533805_1535287_-	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]	NA|264aa|down_7|NZ_CP047176.1_1535283_1536075_-	NA	NA|356aa|down_8|NZ_CP047176.1_1536190_1537258_+	pfam12770, CHAT, CHAT domain	NA|489aa|down_9|NZ_CP047176.1_1537261_1538728_-	NA
GCF_009834225.1_ASM983422v1	NZ_CP047176	Rathayibacter sp. VKM Ac-2759 chromosome, complete genome	4	3350713-3350856	4	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	Orphan	TTCGGCTCGCAGAAACCCGTTCGGCTCGCAGAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh,PD-DExK,RT	NA|213aa|up_1|NZ_CP047176.1_3348886_3349525_+,NA|245aa|down_6|NZ_CP047176.1_3359090_3359825_+	NA|193aa|up_9|NZ_CP047176.1_3335865_3336444_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1626aa|up_8|NZ_CP047176.1_3336585_3341463_-	pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59	NA|580aa|up_7|NZ_CP047176.1_3341710_3343450_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|367aa|up_6|NZ_CP047176.1_3343633_3344734_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|270aa|up_5|NZ_CP047176.1_3344730_3345540_+	pfam14100, PmoA, Methane oxygenase PmoA	NA|431aa|up_4|NZ_CP047176.1_3345664_3346957_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|330aa|up_3|NZ_CP047176.1_3346986_3347976_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|306aa|up_2|NZ_CP047176.1_3347972_3348890_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|213aa|up_1|NZ_CP047176.1_3348886_3349525_+	NA	NA|346aa|up_0|NZ_CP047176.1_3349642_3350680_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|389aa|down_0|NZ_CP047176.1_3351042_3352209_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|398aa|down_1|NZ_CP047176.1_3352205_3353399_+	pfam06187, DUF993, Protein of unknown function (DUF993)	NA|279aa|down_2|NZ_CP047176.1_3353395_3354232_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|462aa|down_3|NZ_CP047176.1_3355850_3357236_+	pfam04122, CW_binding_2, Putative cell wall binding repeat 2	NA|292aa|down_4|NZ_CP047176.1_3357414_3358290_-	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]	NA|225aa|down_5|NZ_CP047176.1_3358437_3359112_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|245aa|down_6|NZ_CP047176.1_3359090_3359825_+	NA	NA|330aa|down_7|NZ_CP047176.1_3359842_3360832_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|582aa|down_8|NZ_CP047176.1_3360908_3362654_+	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|568aa|down_9|NZ_CP047176.1_3363043_3364747_-	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family
