assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009834265.1_ASM983426v1	NZ_CP047185	Rathayibacter sp. VKM Ac-2805 chromosome, complete genome	1	112240-112356	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	TGCGACAACTCCTGGACACTCGCGGGCTCTGGTC	34	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA|68aa|up_2|NZ_CP047185.1_109186_109390_+,NA	NA|391aa|up_9|NZ_CP047185.1_99874_101047_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|214aa|up_8|NZ_CP047185.1_101043_101685_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|795aa|up_7|NZ_CP047185.1_101921_104306_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|128aa|up_6|NZ_CP047185.1_104428_104812_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|287aa|up_5|NZ_CP047185.1_104953_105814_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|655aa|up_4|NZ_CP047185.1_106012_107977_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|301aa|up_3|NZ_CP047185.1_108137_109040_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|68aa|up_2|NZ_CP047185.1_109186_109390_+	NA	NA|565aa|up_1|NZ_CP047185.1_109453_111148_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|309aa|up_0|NZ_CP047185.1_111258_112185_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|97aa|down_0|NZ_CP047185.1_112400_112691_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|175aa|down_1|NZ_CP047185.1_112761_113286_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|273aa|down_2|NZ_CP047185.1_113417_114236_+	pfam06724, DUF1206, Domain of Unknown Function (DUF1206)	NA|169aa|down_3|NZ_CP047185.1_114324_114831_+	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK	NA|719aa|down_4|NZ_CP047185.1_114904_117061_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|225aa|down_5|NZ_CP047185.1_117261_117936_+	PRK00024, PRK00024, DNA repair protein RadC	NA|350aa|down_6|NZ_CP047185.1_118139_119189_+	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|318aa|down_7|NZ_CP047185.1_119236_120190_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|202aa|down_8|NZ_CP047185.1_120345_120951_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|274aa|down_9|NZ_CP047185.1_121066_121888_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase
GCF_009834265.1_ASM983426v1	NZ_CP047185	Rathayibacter sp. VKM Ac-2805 chromosome, complete genome	2	1880611-1880935	1	CRT	no		csa3,WYL,cas3,DEDDh	Orphan	CNNNNNNNNCGAGGNCGCC	19	0	0	NA	NA	NA	5	5	Orphan	csa3,WYL,cas3,DEDDh	NA|599aa|up_0|NZ_CP047185.1_1878087_1879884_-,NA|79aa|down_1|NZ_CP047185.1_1882320_1882557_-	NA|836aa|up_9|NZ_CP047185.1_1861796_1864304_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|368aa|up_8|NZ_CP047185.1_1864300_1865404_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|430aa|up_7|NZ_CP047185.1_1865463_1866753_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|691aa|up_6|NZ_CP047185.1_1866751_1868824_+	cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes	NA|161aa|up_5|NZ_CP047185.1_1868823_1869306_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|858aa|up_4|NZ_CP047185.1_1869428_1872002_-	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|739aa|up_3|NZ_CP047185.1_1872226_1874443_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|724aa|up_2|NZ_CP047185.1_1874880_1877052_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|321aa|up_1|NZ_CP047185.1_1877128_1878091_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|599aa|up_0|NZ_CP047185.1_1878087_1879884_-	NA	NA|242aa|down_0|NZ_CP047185.1_1881598_1882324_-	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|79aa|down_1|NZ_CP047185.1_1882320_1882557_-	NA	NA|583aa|down_2|NZ_CP047185.1_1882663_1884412_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|247aa|down_3|NZ_CP047185.1_1884471_1885212_-	TIGR04216, halo_surf_glyco, major cell surface glycoprotein	NA|184aa|down_4|NZ_CP047185.1_1885263_1885815_-	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein	NA|313aa|down_5|NZ_CP047185.1_1885877_1886816_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|185aa|down_6|NZ_CP047185.1_1886896_1887451_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|244aa|down_7|NZ_CP047185.1_1887483_1888215_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|276aa|down_8|NZ_CP047185.1_1888350_1889178_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|316aa|down_9|NZ_CP047185.1_1889356_1890304_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional
GCF_009834265.1_ASM983426v1	NZ_CP047185	Rathayibacter sp. VKM Ac-2805 chromosome, complete genome	3	2356415-2356570	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GCAAGGCGGAGGAGGAAGCGATACCGGCGGTATCGCGCCCGACGACAACGCCGC	54	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA|411aa|up_9|NZ_CP047185.1_2345733_2346966_+,NA	NA|411aa|up_9|NZ_CP047185.1_2345733_2346966_+	NA	NA|220aa|up_8|NZ_CP047185.1_2347009_2347669_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|346aa|up_7|NZ_CP047185.1_2348042_2349080_-	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family	NA|405aa|up_6|NZ_CP047185.1_2349116_2350331_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|101aa|up_5|NZ_CP047185.1_2350459_2350762_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|438aa|up_4|NZ_CP047185.1_2350813_2352127_-	pfam09594, GT87, Glycosyltransferase family 87	NA|501aa|up_3|NZ_CP047185.1_2352268_2353771_-	cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	NA|292aa|up_2|NZ_CP047185.1_2353767_2354643_-	pfam02424, ApbE, ApbE family	NA|167aa|up_1|NZ_CP047185.1_2354629_2355130_-	smart00900, FMN_bind, This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins	NA|280aa|up_0|NZ_CP047185.1_2355299_2356139_-	cd01171, YXKO-related, B	NA|349aa|down_0|NZ_CP047185.1_2356594_2357641_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|459aa|down_1|NZ_CP047185.1_2357633_2359010_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|341aa|down_2|NZ_CP047185.1_2359215_2360238_-	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|480aa|down_3|NZ_CP047185.1_2360266_2361706_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|1279aa|down_4|NZ_CP047185.1_2361851_2365688_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|88aa|down_5|NZ_CP047185.1_2365922_2366186_-	TIGR02949, putative_anti-sigma_factor, anti-sigma factor, TIGR02949 family	NA|234aa|down_6|NZ_CP047185.1_2366182_2366884_-	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family	NA|452aa|down_7|NZ_CP047185.1_2367049_2368405_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|359aa|down_8|NZ_CP047185.1_2368408_2369485_+	COG1162, COG1162, Predicted GTPases [General function prediction only]	NA|165aa|down_9|NZ_CP047185.1_2369481_2369976_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCF_009834265.1_ASM983426v1	NZ_CP047185	Rathayibacter sp. VKM Ac-2805 chromosome, complete genome	4	2446501-2446692	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GCCGCCGGAGCACCCGCCTTCACC	24	0	0	NA	NA	NA	4	4	Orphan	csa3,WYL,cas3,DEDDh	NA,NA|348aa|down_1|NZ_CP047185.1_2450100_2451144_-	NA|292aa|up_9|NZ_CP047185.1_2436519_2437395_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|203aa|up_8|NZ_CP047185.1_2437456_2438065_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|282aa|up_7|NZ_CP047185.1_2438178_2439024_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|368aa|up_6|NZ_CP047185.1_2439053_2440157_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|437aa|up_5|NZ_CP047185.1_2440177_2441488_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|156aa|up_4|NZ_CP047185.1_2441538_2442006_-	pfam00731, AIRC, AIR carboxylase	NA|377aa|up_3|NZ_CP047185.1_2442118_2443249_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|164aa|up_2|NZ_CP047185.1_2443311_2443803_-	pfam03703, bPH_2, Bacterial PH domain	NA|256aa|up_1|NZ_CP047185.1_2443802_2444570_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|535aa|up_0|NZ_CP047185.1_2444716_2446321_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|74aa|down_0|NZ_CP047185.1_2449334_2449556_+	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit	NA|348aa|down_1|NZ_CP047185.1_2450100_2451144_-	NA	NA|405aa|down_2|NZ_CP047185.1_2451140_2452355_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|down_3|NZ_CP047185.1_2452341_2453043_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|435aa|down_4|NZ_CP047185.1_2453066_2454371_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|232aa|down_5|NZ_CP047185.1_2454346_2455042_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|587aa|down_6|NZ_CP047185.1_2455140_2456901_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|479aa|down_7|NZ_CP047185.1_2457322_2458759_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|278aa|down_8|NZ_CP047185.1_2458865_2459699_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|556aa|down_9|NZ_CP047185.1_2459695_2461363_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_009834265.1_ASM983426v1	NZ_CP047185	Rathayibacter sp. VKM Ac-2805 chromosome, complete genome	5	3131853-3131984	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GCGAGGCGTACCGAACTGGCATCTCGCGGAGAGGGGA	37	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA,NA	NA|612aa|up_9|NZ_CP047185.1_3121462_3123298_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|347aa|up_8|NZ_CP047185.1_3123390_3124431_-	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	NA|259aa|up_7|NZ_CP047185.1_3124462_3125239_-	PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional	NA|256aa|up_6|NZ_CP047185.1_3125266_3126034_-	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|269aa|up_5|NZ_CP047185.1_3126180_3126987_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|369aa|up_4|NZ_CP047185.1_3127010_3128117_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|296aa|up_3|NZ_CP047185.1_3128158_3129046_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|119aa|up_2|NZ_CP047185.1_3129305_3129662_+	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|265aa|up_1|NZ_CP047185.1_3129907_3130702_+	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold	NA|316aa|up_0|NZ_CP047185.1_3130856_3131804_+	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|135aa|down_0|NZ_CP047185.1_3132025_3132430_+	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|264aa|down_1|NZ_CP047185.1_3132429_3133221_+	TIGR01581, Molybdenum_transport_system_permease_protein_modB	NA|338aa|down_2|NZ_CP047185.1_3133217_3134231_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|385aa|down_3|NZ_CP047185.1_3134327_3135482_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|222aa|down_4|NZ_CP047185.1_3135478_3136144_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|128aa|down_5|NZ_CP047185.1_3136396_3136780_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|138aa|down_6|NZ_CP047185.1_3136776_3137190_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|175aa|down_7|NZ_CP047185.1_3137186_3137711_-	pfam00582, Usp, Universal stress protein family	NA|362aa|down_8|NZ_CP047185.1_3137894_3138980_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|238aa|down_9|NZ_CP047185.1_3139040_3139754_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]
