assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009834385.1_ASM983438v1	NZ_CP044412	Lactobacillus sp. JM1 chromosome, complete genome	1	168015-168116	1	CRISPRCasFinder	no		cas2,cas3,DEDDh,DinG,WYL,csn2,cas1,cas9,csa3	Orphan	ATGCTAATGGTTCAACAATTAAGGTAGCTATTAACG	36	1	1	168051-168080	NZ_CP044414.1_27292-27321	NA	1	1	Orphan	cas2,cas3,DEDDh,DinG,WYL,csn2,cas1,cas9,csa3	NA|161aa|up_8|NZ_CP044412.1_152284_152767_+,NA|465aa|up_7|NZ_CP044412.1_152819_154214_+,NA|130aa|up_4|NZ_CP044412.1_157686_158076_+,NA|269aa|down_2|NZ_CP044412.1_178091_178898_+,NA|312aa|down_6|NZ_CP044412.1_182768_183704_-,NA|574aa|down_8|NZ_CP044412.1_185959_187681_+	NA|271aa|up_9|NZ_CP044412.1_151319_152132_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|161aa|up_8|NZ_CP044412.1_152284_152767_+	NA	NA|465aa|up_7|NZ_CP044412.1_152819_154214_+	NA	NA|650aa|up_6|NZ_CP044412.1_154266_156216_+	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|444aa|up_5|NZ_CP044412.1_156245_157577_+	COG3919, COG3919, Predicted ATP-grasp enzyme [General function prediction only]	NA|130aa|up_4|NZ_CP044412.1_157686_158076_+	NA	NA|737aa|up_3|NZ_CP044412.1_158305_160516_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|238aa|up_2|NZ_CP044412.1_160515_161229_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|198aa|up_1|NZ_CP044412.1_161284_161878_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|399aa|up_0|NZ_CP044412.1_161874_163071_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|406aa|down_0|NZ_CP044412.1_175597_176815_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|332aa|down_1|NZ_CP044412.1_176933_177929_+	PRK12858, PRK12858, tagatose 1,6-diphosphate aldolase; Reviewed	NA|269aa|down_2|NZ_CP044412.1_178091_178898_+	NA	NA|253aa|down_3|NZ_CP044412.1_178991_179750_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|309aa|down_4|NZ_CP044412.1_179874_180801_+	TIGR03828, pfkB, 1-phosphofructokinase	NA|644aa|down_5|NZ_CP044412.1_180819_182751_+	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|down_6|NZ_CP044412.1_182768_183704_-	NA	NA|650aa|down_7|NZ_CP044412.1_183865_185815_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|574aa|down_8|NZ_CP044412.1_185959_187681_+	NA	NA|553aa|down_9|NZ_CP044412.1_187869_189528_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase
GCF_009834385.1_ASM983438v1	NZ_CP044412	Lactobacillus sp. JM1 chromosome, complete genome	2	1161579-1162010	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas2,cas3,DEDDh,DinG,WYL,csn2,cas1,cas9,csa3	Type II-C,Type II-A,Type II-B	GATCTAAGCCTTATTGATCTAACAACCATCTAAAAC,CCTTATTGATCTAACAACCATCTAAAAC,GATCTAAGCCTTATTGATCTAACAACCATCTAAAAC	36,28,36	0	0	NA	NA	NA:NA:NA	6,6,5	6	TypeII-C,TypeII-A,TypeII-B	cas2,cas3,DEDDh,DinG,WYL,csn2,cas1,cas9,csa3	NA|135aa|up_5|NZ_CP044412.1_1156605_1157010_-,NA	NA|214aa|up_9|NZ_CP044412.1_1152788_1153430_-	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	NA|451aa|up_8|NZ_CP044412.1_1153704_1155057_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|268aa|up_7|NZ_CP044412.1_1155125_1155929_-	pfam08428, Rib, Rib/alpha-like repeat	NA|128aa|up_6|NZ_CP044412.1_1156145_1156529_-	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|135aa|up_5|NZ_CP044412.1_1156605_1157010_-	NA	NA|220aa|up_4|NZ_CP044412.1_1157199_1157859_+	pfam09726, Macoilin, Macoilin family	NA|147aa|up_3|NZ_CP044412.1_1157888_1158329_-	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|280aa|up_2|NZ_CP044412.1_1158452_1159292_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|306aa|up_1|NZ_CP044412.1_1159496_1160414_-	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|142aa|up_0|NZ_CP044412.1_1160503_1160929_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	csn2|223aa|down_0|NZ_CP044412.1_1162042_1162711_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP044412.1_1162707_1163013_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_2|NZ_CP044412.1_1162990_1163899_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1387aa|down_3|NZ_CP044412.1_1164104_1168265_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|329aa|down_4|NZ_CP044412.1_1168597_1169584_-	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|203aa|down_5|NZ_CP044412.1_1169600_1170209_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|295aa|down_6|NZ_CP044412.1_1170241_1171126_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|346aa|down_7|NZ_CP044412.1_1171132_1172170_-	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|392aa|down_8|NZ_CP044412.1_1172251_1173427_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|56aa|down_9|NZ_CP044412.1_1174047_1174215_+	pfam13074, DUF3938, Protein of unknown function (DUF3938)
GCF_009834385.1_ASM983438v1	NZ_CP044414	Lactobacillus sp. JM1 plasmid unnamed2, complete sequence	1	25923-26079	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACGAGCGGAATTTCGAAAATCGAAAG	37	0	0	NA	NA	NA	1	1	Orphan	cas2,cas3,DEDDh,DinG,WYL,csn2,cas1,cas9,csa3	NA|339aa|up_7|NZ_CP044414.1_15114_16131_+,NA|72aa|up_1|NZ_CP044414.1_23912_24128_-,NA|105aa|down_1|NZ_CP044414.1_27318_27633_+,NA|93aa|down_2|NZ_CP044414.1_27622_27901_-,NA|70aa|down_3|NZ_CP044414.1_27923_28133_-,NA|283aa|down_9|NZ_CP044414.1_39366_40215_+	NA|107aa|up_9|NZ_CP044414.1_13689_14010_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|211aa|up_8|NZ_CP044414.1_14480_15113_+	pfam00881, Nitroreductase, Nitroreductase family	NA|339aa|up_7|NZ_CP044414.1_15114_16131_+	NA	NA|339aa|up_6|NZ_CP044414.1_16145_17162_+	pfam00899, ThiF, ThiF family	NA|281aa|up_5|NZ_CP044414.1_17194_18037_+	COG1944, COG1944, Uncharacterized conserved protein [Function unknown]	NA|529aa|up_4|NZ_CP044414.1_18047_19634_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|524aa|up_3|NZ_CP044414.1_19640_21212_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|265aa|up_2|NZ_CP044414.1_21766_22561_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|72aa|up_1|NZ_CP044414.1_23912_24128_-	NA	NA|262aa|up_0|NZ_CP044414.1_24134_24920_-	pfam13614, AAA_31, AAA domain	NA|94aa|down_0|NZ_CP044414.1_26855_27137_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|105aa|down_1|NZ_CP044414.1_27318_27633_+	NA	NA|93aa|down_2|NZ_CP044414.1_27622_27901_-	NA	NA|70aa|down_3|NZ_CP044414.1_27923_28133_-	NA	NA|687aa|down_4|NZ_CP044414.1_28401_30462_+	pfam03389, MobA_MobL, MobA/MobL family	NA|128aa|down_5|NZ_CP044414.1_30957_31341_+	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|399aa|down_6|NZ_CP044414.1_31713_32910_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|201aa|down_7|NZ_CP044414.1_33120_33723_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|down_8|NZ_CP044414.1_38178_38865_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|283aa|down_9|NZ_CP044414.1_39366_40215_+	NA
