The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	19105	58531	2667255	transposase,protease,holin	Acinetobacter_phage(37.5%)	37	NA	NA
WP_159301006.1|19105_20026_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.5	3.4e-21
WP_003600703.1|20473_20776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003577228.1|21175_22411_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_003596885.1|22614_25188_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003596886.1|25200_25902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	3.9e-33
WP_003592429.1|26198_26750_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003596889.1|26793_27600_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003577235.1|29675_30449_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_011673940.1|30632_31232_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_003568507.1|31355_32249_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003568509.1|32297_32936_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003568512.1|33164_34541_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_003596899.1|34763_35108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301007.1|35183_35543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016386168.1|35783_37226_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_003600713.1|37420_38050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301008.1|38360_39522_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.1	3.3e-29
WP_003562592.1|39690_40353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003562594.1|40352_41282_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003568628.1|41293_41923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003596965.1|41925_43179_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	43.0	1.5e-14
WP_018041594.1|43230_43566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096836470.1|43863_44784_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	6.9e-22
WP_159301009.1|44854_45508_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_016378075.1|45573_45795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003596968.1|45918_46104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003600722.1|46140_47997_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.9	8.3e-67
WP_003562606.1|48016_48244_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_159301010.1|48391_48976_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_003596974.1|49024_49684_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_159301011.1|50298_51093_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_003600733.1|51085_52306_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_003596980.1|52289_52889_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_003600735.1|53040_53823_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.3	3.2e-36
WP_003600736.1|53819_54845_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.9	2.4e-60
WP_016379015.1|55605_56889_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_096836083.1|57112_58531_+|transposase	IS5-like element ISLrh3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	70502	202563	2667255	transposase	unidentified_phage(20.83%)	114	NA	NA
WP_011674296.1|70502_72005_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_003585300.1|72105_72459_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_003585301.1|72433_72631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003597022.1|72866_73265_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_003597024.1|73227_73497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003597025.1|73646_74414_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_003600754.1|74410_75316_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_003597028.1|75408_76560_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_003572973.1|76567_77272_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_159301012.1|77282_78629_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_003597032.1|79342_80722_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003592633.1|80723_81731_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_003597036.1|81734_82793_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011673978.1|82785_82929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003562673.1|82988_83366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016378678.1|83740_83944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597037.1|84518_84932_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_159301013.1|84924_85791_+	EamA family transporter	NA	NA	NA	NA	NA
WP_096835977.1|85939_86860_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.5	2.6e-21
WP_159301006.1|87718_88639_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.5	3.4e-21
WP_159301313.1|88647_90072_+|transposase	IS5-like element ISLrh3 family transposase	transposase	NA	NA	NA	NA
WP_016378584.1|90132_90480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562684.1|91178_93185_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_003562688.1|93200_93656_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_096835997.1|94269_95286_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.4e-36
WP_003589754.1|95518_96448_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_016386095.1|96674_98510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100223497.1|98600_99794_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_159301014.1|99689_100477_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003574021.1|102939_103860_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_039639870.1|104323_107269_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003597463.1|107359_107584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096836487.1|107714_108502_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_071799137.1|108529_108973_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003597072.1|108969_109188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096836596.1|109307_110171_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	3.1e-24
WP_079322958.1|110167_110464_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003600779.1|110567_111419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562690.1|111737_113126_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.6	1.6e-126
WP_159301015.1|113191_114355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562710.1|114594_115890_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	35.6	3.9e-63
WP_016386314.1|116198_118058_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.0	1.0e-88
WP_003597078.1|118152_118503_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004559554.1|118589_121010_-	plasma-membrane proton-efflux P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	24.4	9.3e-42
WP_003597080.1|121253_122132_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_159301016.1|122568_123690_+	helix-turn-helix domain-containing protein	NA	Q6J1N3	Burkholderia_virus	43.8	6.5e-06
WP_003562727.1|123756_123972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562729.1|123968_124898_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	2.7e-34
WP_003597082.1|124894_125656_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_004559557.1|125969_128153_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	59.7	3.3e-256
WP_159301017.1|128464_129058_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_024305909.1|129150_130569_+|transposase	IS5-like element ISLrh3 family transposase	transposase	NA	NA	NA	NA
WP_123018126.1|131632_132420_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_096836493.1|132384_133191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016386247.1|133732_135148_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_159301018.1|135348_136764_-|transposase	IS5-like element ISLca2 family transposase	transposase	NA	NA	NA	NA
WP_003600819.1|137016_137253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016378753.1|137486_138848_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003597101.1|139571_139856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003600825.1|140322_141303_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003600831.1|141519_142596_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003562754.1|142817_143069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003600832.1|143222_144296_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_003562762.1|144469_144961_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	39.7	2.6e-15
WP_003573025.1|145027_146029_+	D-2-hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	34.5	1.8e-47
WP_003577355.1|146111_146408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003573029.1|146569_147076_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003600833.1|147186_148119_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003600836.1|148243_148606_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_004469170.1|148825_149176_-	YisL family protein	NA	NA	NA	NA	NA
WP_019728331.1|149244_150261_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_003597113.1|150562_152020_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	28.7	9.8e-39
WP_003600855.1|152160_152484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016386298.1|152555_153530_-	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_003562796.1|153722_154019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597119.1|154273_154849_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003600861.1|155191_157246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016378570.1|157623_158397_+	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003597129.1|159415_160495_+	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_003562813.1|160719_160953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597134.1|160949_162410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597136.1|162550_163537_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_096836502.1|163639_164872_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.3	1.6e-10
WP_003573065.1|165067_165397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003598946.1|165577_166924_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	43.4	5.1e-90
WP_003583008.1|166981_168172_+	acetate kinase	NA	NA	NA	NA	NA
WP_003598943.1|168272_169097_-	serine/threonine protein phosphatase	NA	A8AT52	Listeria_phage	29.5	1.2e-12
WP_003598941.1|169312_170041_+	endonuclease III domain protein	NA	NA	NA	NA	NA
WP_003574021.1|171396_172317_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_096836504.1|173604_174888_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_096836506.1|175007_176423_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003600905.1|179611_180745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080596404.1|180904_181369_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_014566722.1|181420_181630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016378115.1|181635_181911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003600902.1|182315_183941_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003600901.1|184184_186566_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_003597152.1|186825_186972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597148.1|188941_189541_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_109990011.1|189537_190700_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.5	1.9e-29
WP_159301019.1|190888_192739_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003597169.1|192890_194246_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003562871.1|194256_194889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003597170.1|195074_196388_+	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_003597171.1|196512_197355_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003562878.1|197354_197729_+	DUF1634 domain-containing protein	NA	NA	NA	NA	NA
WP_003562894.1|197816_198023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003573098.1|198271_198778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003597172.1|198934_199240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003600920.1|199406_199874_+	flavodoxin	NA	NA	NA	NA	NA
WP_003562902.1|199921_200164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003600923.1|200160_200355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562906.1|200452_201415_-	NAD(P)-binding domain-containing protein	NA	Q89388	Paramecium_bursaria_Chlorella_virus	29.9	3.8e-23
WP_080595781.1|201654_202563_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	4.9e-12
>prophage 3
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	270360	311541	2667255	transposase,protease	Faecalibacterium_phage(37.5%)	35	NA	NA
WP_123155831.1|270360_271359_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_003577430.1|271753_271918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003563110.1|272120_272309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003568849.1|272837_273020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601685.1|273210_274575_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_016386220.1|274757_275606_-	sce7725 family protein	NA	NA	NA	NA	NA
WP_003601688.1|275602_276283_-	hypothetical protein	NA	U5PU21	Bacillus_phage	33.5	1.9e-16
WP_003601690.1|276260_278645_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_159301024.1|278951_280265_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_159301025.1|280294_281311_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	3.5e-35
WP_003601693.1|281556_282252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016386218.1|282512_284222_+	family 20 glycosylhydrolase	NA	NA	NA	NA	NA
WP_003601696.1|284602_285622_+	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
WP_159301026.1|285974_286991_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.1	6.0e-35
WP_003601137.1|289621_290314_+	thiaminase II	NA	NA	NA	NA	NA
WP_003601138.1|290294_290795_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_003601144.1|291647_292289_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_003601146.1|292278_293106_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003601148.1|293490_294939_+	amino acid permease	NA	NA	NA	NA	NA
WP_003597552.1|295173_295872_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_080595781.1|295808_296717_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	4.9e-12
WP_003601163.1|296887_297133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601165.1|297512_298520_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003601167.1|298579_298972_+	D-ribose pyranase	NA	NA	NA	NA	NA
WP_159301027.1|299142_300645_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	3.3e-21
WP_003573417.1|300628_301609_+	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_003601171.1|301665_302625_+	D-ribose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003601173.1|302764_303694_+	ribokinase	NA	NA	NA	NA	NA
WP_003601175.1|304111_306103_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_003601178.1|306277_307660_+	MFS transporter	NA	NA	NA	NA	NA
WP_003601179.1|307640_308075_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003601180.1|308071_308635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601181.1|308647_308863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301028.1|309676_310366_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_096836371.1|310524_311541_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.9e-36
>prophage 4
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	474520	590860	2667255	transposase,protease,bacteriocin,tRNA	unidentified_phage(10.71%)	97	NA	NA
WP_003600190.1|474520_475537_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.6	6.4e-37
WP_003573866.1|475697_477080_-	amino acid permease	NA	NA	NA	NA	NA
WP_016386158.1|477290_479522_+	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_003563638.1|482017_482425_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_003563640.1|482435_482888_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003601365.1|482939_483806_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_016378328.1|483805_484699_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	34.4	1.2e-18
WP_003601369.1|484929_485709_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003601370.1|485701_486370_-	carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_003563651.1|486580_486907_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_080595781.1|487632_488541_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	4.9e-12
WP_003597552.1|488477_489176_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_003563654.1|489321_490638_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	30.1	1.6e-32
WP_003563657.1|491039_491981_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_018041548.1|492110_492782_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	46.8	5.2e-19
WP_016377878.1|493974_495561_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.7	7.2e-43
WP_003601379.1|496006_497683_+	MutS-related protein	NA	F2QAF9	Pyramimonas_orientalis_virus	28.1	3.4e-11
WP_003601381.1|497679_498261_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_159301037.1|498371_499079_-	MIP family channel protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	34.0	3.0e-25
WP_159301038.1|499093_500947_-	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_159301039.1|501001_502519_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003601389.1|502780_503503_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003601391.1|503825_504992_+	galactokinase	NA	NA	NA	NA	NA
WP_003563715.1|505086_506082_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	37.9	1.4e-52
WP_003563717.1|506078_507539_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003601394.1|507574_508588_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	24.0	3.5e-11
WP_003601396.1|508737_509748_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003577958.1|509974_510694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301040.1|510816_511746_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.5	8.5e-20
WP_016378787.1|512043_512538_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003601405.1|512552_512861_+	PTS galactose IIB component	NA	NA	NA	NA	NA
WP_003601406.1|512916_514368_+	PTS galactose IIC component	NA	NA	NA	NA	NA
WP_096835997.1|514545_515562_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.4e-36
WP_003574021.1|515698_516619_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_032797566.1|517074_518193_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_003603310.1|518561_518678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301041.1|518783_520187_-|transposase	IS5-like element ISLca3 family transposase	transposase	NA	NA	NA	NA
WP_016385901.1|520736_522929_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.7	1.1e-36
WP_003603306.1|522939_524319_+|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_003659570.1|524932_525226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567335.1|525531_526887_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_003599758.1|527474_527759_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003567328.1|527782_528061_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_050555697.1|528105_528867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080596451.1|528838_530302_-|transposase	IS5-like element ISLrh2 family transposase	transposase	NA	NA	NA	NA
WP_003603292.1|530527_531316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567322.1|531312_531642_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003599756.1|531777_532407_-	helix-turn-helix transcriptional regulator	NA	A0A0S2MVM8	Bacillus_phage	37.5	1.6e-06
WP_016377825.1|532677_533733_-	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_016365506.1|533941_535138_+	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_003567312.1|535232_535790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016386275.1|540569_541892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301042.1|541888_543448_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA	NA
WP_003599733.1|543454_544282_+	class C sortase	NA	NA	NA	NA	NA
WP_003603266.1|544517_545741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003571396.1|545929_546466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003588746.1|546719_546914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003599730.1|547230_548064_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	7.3e-47
WP_003599729.1|548152_549409_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	56.8	5.6e-99
WP_003603264.1|549487_550720_-	MFS transporter	NA	NA	NA	NA	NA
WP_018041511.1|550744_550921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567288.1|551523_551730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567286.1|551800_552058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567284.1|552190_552397_+	CsbD family protein	NA	NA	NA	NA	NA
WP_128528278.1|552475_553474_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.5	3.0e-55
WP_003588738.1|553702_554818_+	L-lactate oxidase	NA	NA	NA	NA	NA
WP_003567280.1|555008_555293_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_003599717.1|555306_556428_-	bacitracin ABC transporter permease	NA	NA	NA	NA	NA
WP_003603261.1|556937_557609_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_003576237.1|558108_558732_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_016365316.1|558893_561524_+	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	40.0	1.6e-87
WP_003599714.1|561680_563735_-	potassium transporter Kup	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	32.9	1.6e-63
WP_003567269.1|563896_564775_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.4	1.2e-12
WP_016365315.1|564837_566031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003599703.1|566030_567131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603257.1|567358_568705_-	C1 family peptidase	NA	A0A2H4UTL8	Bodo_saltans_virus	29.8	6.9e-47
WP_003603256.1|569063_570383_-	C1 family peptidase	NA	R4TV59	Phaeocystis_globosa_virus	34.5	7.0e-60
WP_003567260.1|570627_571005_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_003567258.1|571121_571412_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003567256.1|571632_572175_+	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	48.6	8.1e-39
WP_003599699.1|572191_573556_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_003567252.1|573578_574694_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA	NA
WP_003603253.1|574996_575884_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	40.5	1.5e-34
WP_096836371.1|576164_577181_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.9e-36
WP_016371648.1|578187_579459_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_003567242.1|579623_579998_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003603239.1|580004_581021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003603238.1|581033_581873_+|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_159301043.1|582019_582850_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_003603236.1|583033_583705_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
WP_003588680.1|583820_584801_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_003576207.1|584948_586442_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003661812.1|586675_586783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003576205.1|586917_587109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301044.1|587108_587693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003603233.1|587818_589213_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_016378394.1|589453_590860_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	30.6	1.5e-52
>prophage 5
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	801174	926251	2667255	tRNA,tail,transposase,protease,integrase	unidentified_phage(13.33%)	102	801123:801182	851356:853016
801123:801182	attL	GGTACTATCCCCTGTCAAGTTGACACTTATAAAAACGAAAACACAATTTTTCTTATCCGA	NA	NA	NA	NA
WP_159301314.1|801174_802083_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	3.7e-12
WP_003597552.1|802019_802718_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_003602965.1|803142_804741_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	48.7	1.8e-118
WP_123030382.1|805767_806784_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	7.1e-36
WP_003602959.1|807177_808104_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.3	3.4e-77
WP_152428141.1|808151_809228_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_003602956.1|809345_811481_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_003602954.1|811528_812335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003602950.1|813338_814151_+	ribokinase family sugar kinase	NA	NA	NA	NA	NA
WP_016368733.1|814347_814584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003566744.1|814959_815565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003602947.1|815990_816581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301059.1|816621_819204_+	AAA family ATPase	NA	U5J9B0	Bacillus_phage	25.3	4.4e-50
WP_159301060.1|819549_820296_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_003602941.1|820572_821316_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003602939.1|821378_823601_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_003602938.1|824164_825589_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_016378481.1|825585_825792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003602936.1|825763_826174_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_003589754.1|826547_827477_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_003600648.1|828485_828821_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003600649.1|829072_829639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016363974.1|829777_829885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003600650.1|830108_830891_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_159301061.1|830887_832372_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_003600652.1|832364_833072_+	lactate utilization protein C	NA	NA	NA	NA	NA
WP_003566713.1|833885_834449_+	elongation factor P	NA	NA	NA	NA	NA
WP_003600653.1|834682_836107_+	MFS transporter	NA	NA	NA	NA	NA
WP_003566708.1|838335_839259_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003566706.1|839258_840257_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003600656.1|840268_841321_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	9.6e-20
WP_003600657.1|841322_842300_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.6	2.4e-20
WP_003600658.1|842607_843246_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003566698.1|843504_843816_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_159301062.1|843925_844942_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.1	1.2e-35
WP_003602927.1|845292_845517_+	DUF2829 domain-containing protein	NA	A8AT88	Listeria_phage	34.4	6.2e-09
WP_159301063.1|845513_846227_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
WP_003602924.1|846338_846839_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_003602922.1|846989_847397_+	transcriptional regulator	NA	Q9AZG0	Lactococcus_phage	46.7	7.7e-26
WP_071799110.1|847544_848264_-	acyltransferase	NA	NA	NA	NA	NA
WP_080596444.1|848626_849601_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	42.7	1.7e-66
WP_003597552.1|849819_850518_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_159301314.1|850454_851363_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	3.7e-12
WP_011674977.1|851970_852987_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_159301064.1|853341_854262_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
851356:853016	attR	TCGGATAAGAAAAATTGTGTTTTCGTTTTTATAAGTGTCAACTTGACAGGGGATAGTACCATATCATTGAAACTTTGTACGCATTTCATATGCCAGTTTTTTTTGCTTTGTCAGGTATGTTTTTTAAGAGTGTAACAAATTTTAAAGAGCTATTCAGTTTAACAAAAAACAAATTGTTGGCTCTAGGAATAACGTACATTGCTTTTTCAGTGGTTATGTTTAGCTTACAAAAAATTGGATCCGGGTCAGTCAGAGATCAAACTAGCTTATCTCAACTTTTGAATATTTATAAACAGCCAATAGGCTATCTTTGGTTTCTATATGTATTGTTCTTCGTGTTTGCATACATAGGATTCATCTCTATTTTTATTAAAAATGATACTCACATCCTTTTGATCGTCATTTTTGGGTACATCATTGCCTCAATTTTCAATATACCAATATTCTTTATTCAAAGCACGCTAGTGTGGGCACCAATGTTTTATCTGGGTCATATTTTAAAAAACATGGATTTAAAAATCAACAAAACTACAATGCTTTTATTGTTTGTTTATTTCCTCAATTTTCAAGTCAAGTGCAACGATGATAACGAATTCTTGATAGTGGTCTAGGCTGTTACGCCATGCATCGGTAGTAATCGCATGGGCGAAGATAGTTCAGAATACGTCTGGGACGATGGTTCAGTGCGGATTGGACTGCTTGAATTTCAACCAGGGTAACTGCTCTGAGAGACTTCCCTTTCGGGAAGAATTCCCTAAGCAGTCCATTGGCGTTCTCGTTTGTGCCACGCTCCCAAGGCGAGTACGGATGTGCGAAGTAAATCTGGGTTCCAACAATCTCTGATAACTTGGCAAACTCGGAACCATTGTCAAAAGTGATACTCTCAAATTCCTTGGCCCCGTAGTCGTCGATCGTGTCCTGCAAGGCTTTAAGGCAGGTGCCCGCATGATAGTCAGGAATCTTGACGATGATCTCAGTCCGGCTGTACCGTTCTGTGAGCGTCATTAATGCTGGCTCATCAGCTAAGCGAATACCCTTGACCAAGTCGCCTTCCCAATGTCCCACGCCTGTGCGGTCATTCACGGCCGCAGGACGCAACTCGATTGAGTCGCCGTATATCTTCTTATTCTTGCGCTTGTGGGCGTTCTTATAGCCTTTGATGCGGCGTCGGAGCTTCTTGGGAAGTGTCATGTTGTCTAGCTCAAGCAGCCCGGCGTCGATGTAGCGATACACAGTTGTCGTTGAAGGGCAAGCCTTGCCCTGGTCGCGATAGAAGTGTACGAAGCTATCAACGCTGTGTACGCGCGGCTTACGAGTAAGCTCCCTGGAGAGAGCCTTGAAGAACGCACGGCCGGTCTTAAGAAAGGCGTAGTGACCGGTTCTATCGCGTTTACGGTCGTGCATGGCTTGGGCAGTTTCCGCAAGATAGACTTGATGCGAGTGACGCTTCGAGTCGAGCTGAGTTACAGATCCACGCGTGATTTCTCGTGAGATTGTCGCTTTACTGCGATGAAGCTTCTGTGCAATCACGGTCGCGGTGTCACCAGCAGCCTGAAGGGCCTGAATTGTAGCACGGTCGCTAAAACTGAGTTGTTGGTAATGCTTGTGGGTGTTAGTCTGAGAGTGGGTCATGAAGATTCCTGCTTTCTTGTTTAGCTAGC	NA	NA	NA	NA
WP_003602899.1|855163_855832_+	sugar transferase	NA	NA	NA	NA	NA
WP_159301065.1|856567_857983_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_049152602.1|858068_859487_+|transposase	IS5-like element ISLrh3 family transposase	transposase	NA	NA	NA	NA
WP_159301066.1|860622_861516_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003602891.1|861693_862458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003602890.1|862828_864979_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	36.5	5.2e-121
WP_003570841.1|865612_866014_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_003602889.1|866447_868205_+	fructose-bisphosphatase class III	NA	NA	NA	NA	NA
WP_003574021.1|868220_869141_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_096836367.1|869167_869434_+	fructose-bisphosphatase class III	NA	NA	NA	NA	NA
WP_003659335.1|869565_869826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016364963.1|869876_870731_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	26.5	1.9e-18
WP_016385894.1|871088_872021_+	sortase	NA	NA	NA	NA	NA
WP_159301067.1|872287_873319_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003574021.1|873587_874508_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_159301068.1|874750_876805_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_003662751.1|876846_877989_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_159301069.1|877985_879155_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA	NA
WP_003662753.1|879147_880593_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_159301070.1|880808_883217_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.0	1.2e-12
WP_071798412.1|883466_885245_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA	NA
WP_159301071.1|885697_886627_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_003566600.1|886801_887137_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003570829.1|888789_890064_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	43.1	2.7e-85
WP_159301072.1|890370_891600_+	hypothetical protein	NA	D2KRB9	Lactobacillus_phage	37.0	6.6e-12
WP_003599331.1|891706_892114_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003585182.1|892230_892833_+	guanylate kinase	NA	U5J9X2	Bacillus_phage	31.0	3.6e-11
WP_003566579.1|892902_893016_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_003566577.1|893124_893571_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_159301073.1|893862_894303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003599329.1|894323_895310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566570.1|895726_896464_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.3	3.6e-37
WP_003566568.1|896591_897416_+	glutamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003566566.1|897417_898062_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003575766.1|898077_898740_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_027111529.1|898898_899834_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	32.9	1.5e-35
WP_003599326.1|899918_900674_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003599324.1|900695_901436_+	mannosyltransferase involved in polysaccharide biosynthesis	NA	L7RBS6	Acanthamoeba_polyphaga_moumouvirus	31.2	4.9e-10
WP_003566555.1|901566_902967_+	sugar transferase	NA	NA	NA	NA	NA
WP_003566356.1|903109_903976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301315.1|904255_905395_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	30.5	6.8e-27
WP_159301316.1|905816_906953_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003570792.1|906967_908407_+	histidine kinase	NA	NA	NA	NA	NA
WP_159301317.1|908650_909343_+	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_003566336.1|909400_910036_+	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA	NA
WP_159301074.1|910113_911163_+	EpsG family protein	NA	NA	NA	NA	NA
WP_159301075.1|911450_913775_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_159301076.1|914084_915083_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_159301077.1|915220_916516_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003566327.1|916653_917535_-	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_159301078.1|917670_919326_-	amino acid permease	NA	NA	NA	NA	NA
WP_159301079.1|919626_920385_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	39.1	1.9e-33
WP_159301080.1|920397_922206_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_159301318.1|922556_923216_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003566318.1|923373_924339_+	ferrochelatase	NA	NA	NA	NA	NA
WP_003575726.1|924325_925678_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA	NA
WP_079351652.1|925789_926251_-|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 6
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	935482	1012820	2667255	head,terminase,tail,transposase,portal,protease,holin,capsid,integrase	Lactobacillus_phage(71.93%)	85	938115:938133	979956:979974
WP_159301086.1|935482_936409_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.9	1.5e-29
WP_003566292.1|936581_938135_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.4	1.8e-14
938115:938133	attL	GCAACGATTGAGTGGGAAT	NA	NA	NA	NA
WP_159301087.1|938299_939463_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9I5C3	Streptococcus_phage	31.0	3.6e-44
WP_123156656.1|939681_941298_-	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	45.1	6.3e-87
WP_123156655.1|941373_941577_-	hypothetical protein	NA	A0A0P0IQK8	Lactobacillus_phage	89.6	5.7e-30
WP_159301088.1|941600_942026_-	pyridoxamine 5'-phosphate oxidase family protein	NA	A0A0P0I7K6	Lactobacillus_phage	85.1	3.8e-60
WP_144235239.1|942160_942355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025376036.1|942326_943076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020751738.1|943175_943781_-	DUF4352 domain-containing protein	NA	A0A0P0IXE0	Lactobacillus_phage	98.0	2.9e-77
WP_128529959.1|943846_944233_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_031546731.1|944317_944743_-	helix-turn-helix transcriptional regulator	NA	A0A0B5CYL9	Listeria_phage	44.6	8.9e-25
WP_159301089.1|944892_945159_+	helix-turn-helix domain-containing protein	NA	A0A0K2CYW6	Paenibacillus_phage	37.5	4.4e-06
WP_004562013.1|945155_945314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004562014.1|945371_945878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025376039.1|945883_946093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003607017.1|946105_946234_+	hypothetical protein	NA	A0A0P0IQL2	Lactobacillus_phage	97.6	3.0e-16
WP_159301090.1|946221_946485_+	hypothetical protein	NA	A0A0P0I7L5	Lactobacillus_phage	94.3	1.0e-10
WP_159301319.1|946477_946885_+	hypothetical protein	NA	A0A0P0IXE5	Lactobacillus_phage	96.3	1.9e-72
WP_159301091.1|946897_947761_+	recombinase RecT	NA	A0A0P0IJP1	Lactobacillus_phage	97.9	9.0e-157
WP_159301320.1|947741_948542_+	hypothetical protein	NA	A0A0P0IZH9	Lactobacillus_phage	94.0	1.1e-145
WP_159301092.1|948557_949511_+	DnaD domain protein	NA	A0A1B0Y2R2	Lactobacillus_phage	91.2	2.3e-129
WP_159301093.1|949522_950008_+	single-stranded DNA-binding protein	NA	U5U726	Lactobacillus_phage	86.3	7.5e-60
WP_159301094.1|950023_950473_+	hypothetical protein	NA	B4XYT0	Lactobacillus_phage	89.9	3.4e-67
WP_159301095.1|950475_950859_+	DUF1064 domain-containing protein	NA	B4XYT1	Lactobacillus_phage	92.9	6.7e-64
WP_159301096.1|950992_951550_+	DUF1642 domain-containing protein	NA	Q8LTB6	Lactobacillus_phage	50.8	1.0e-36
WP_159301097.1|951539_951944_+	hypothetical protein	NA	C1KFE8	Lactobacillus_virus	73.1	2.5e-48
WP_159301098.1|951940_952285_+	hypothetical protein	NA	C1KFE7	Lactobacillus_virus	57.3	8.0e-24
WP_159301099.1|952281_952698_+	hypothetical protein	NA	A0A0Y0AFD7	Bacillus_phage	37.5	5.3e-06
WP_159301100.1|952694_953114_+	hypothetical protein	NA	Q6J1U2	Lactobacillus_phage	88.8	2.0e-37
WP_159301101.1|953110_953293_+	hypothetical protein	NA	A0A0P0I365	Lactobacillus_phage	63.3	3.2e-16
WP_011674662.1|953495_953564_+	hypothetical protein	NA	A0A0P0I7I3	Lactobacillus_phage	100.0	4.7e-05
WP_119182921.1|953576_953795_+	helix-turn-helix transcriptional regulator	NA	A0A0P0IXA5	Lactobacillus_phage	97.2	1.3e-32
WP_159301102.1|954063_954507_+	transcriptional regulator	NA	A0A0P0IZI6	Lactobacillus_phage	96.6	5.6e-78
WP_159301103.1|954742_955366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003658511.1|955599_955818_-	CsbD family protein	NA	NA	NA	NA	NA
WP_159301104.1|956227_957376_+	hypothetical protein	NA	A0A0P0I3G0	Lactobacillus_phage	98.2	5.3e-221
WP_003585017.1|957558_957693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301105.1|957761_958340_+|terminase	terminase small subunit	terminase	A0A0P0IUY4	Lactobacillus_phage	77.2	2.1e-61
WP_159301106.1|958323_959577_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0P0I3B0	Lactobacillus_phage	98.8	5.5e-248
WP_159301107.1|959581_961009_+|portal	phage portal protein	portal	A0A0P0IJV3	Lactobacillus_phage	97.1	5.1e-258
WP_159301108.1|960974_961961_+|head	phage head morphogenesis protein	head	A0A0P0ID43	Lactobacillus_phage	95.4	6.8e-177
WP_159301109.1|961972_962413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301110.1|962429_962828_+	hypothetical protein	NA	A0A1S5SBT9	Streptococcus_phage	63.1	7.1e-24
WP_159301111.1|962945_963584_+	DUF4355 domain-containing protein	NA	A0A0P0ID10	Lactobacillus_phage	96.7	4.5e-89
WP_159301112.1|963596_963911_+	hypothetical protein	NA	A0A0P0IJQ8	Lactobacillus_phage	91.3	2.3e-46
WP_159301113.1|963924_964974_+|capsid	major capsid protein	capsid	A0A0P0IZJ7	Lactobacillus_phage	98.2	2.9e-186
WP_070641539.1|965043_965922_+	hypothetical protein	NA	A0A0P0IJL6	Lactobacillus_phage	82.9	6.1e-153
WP_159301114.1|965921_966296_+	hypothetical protein	NA	A0A0P0IZF6	Lactobacillus_phage	96.0	2.3e-61
WP_159301115.1|966300_966603_+	hypothetical protein	NA	A0A0P0HRN0	Lactobacillus_phage	89.0	4.5e-47
WP_159301116.1|966599_966965_+|tail	phage tail protein	tail	A0A0P0IUZ3	Lactobacillus_phage	96.7	1.5e-57
WP_159301117.1|966965_967370_+	hypothetical protein	NA	A0A0P0I3C8	Lactobacillus_phage	97.0	5.6e-69
WP_159301118.1|967381_967984_+|tail	phage tail protein	tail	A0A0N7IR90	Lactobacillus_phage	95.2	5.6e-97
WP_016376572.1|968061_968394_+	phage protein	NA	A0A0P0IQQ6	Lactobacillus_phage	98.2	6.7e-52
WP_159301119.1|968498_968852_+	hypothetical protein	NA	A0A0P0I7N9	Lactobacillus_phage	95.7	1.8e-55
WP_159301120.1|968844_971934_+	tape measure protein	NA	A0A0P0IJD2	Lactobacillus_phage	86.5	1.2e-251
WP_159301121.1|971934_973926_+|tail	phage tail protein	tail	Q7Y4B1	Lactobacillus_phage	72.7	1.4e-269
WP_159301122.1|973926_976908_+|tail	phage tail protein	tail	Q3L0S2	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	80.6	0.0e+00
WP_159301123.1|976917_977247_+	hypothetical protein	NA	A8YQK2	Lactobacillus_phage	89.9	1.5e-48
WP_015978917.1|977243_977387_+	XkdX family protein	NA	A8YQK3	Lactobacillus_phage	100.0	1.6e-18
WP_159301124.1|977416_977707_+	hypothetical protein	NA	B4XYQ7	Lactobacillus_phage	94.8	1.8e-45
WP_159301125.1|977699_978146_+|holin	phage holin	holin	A8YQK6	Lactobacillus_phage	95.3	6.4e-66
WP_159301126.1|978156_979302_+	LysM peptidoglycan-binding domain-containing protein	NA	Q6J1W8	Lactobacillus_phage	52.6	2.6e-87
WP_079351890.1|981237_981486_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
979956:979974	attR	GCAACGATTGAGTGGGAAT	NA	NA	NA	NA
WP_159301127.1|981842_982094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045601007.1|982114_982513_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_159301128.1|986354_987517_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.5	3.3e-29
WP_159301129.1|987919_989515_-	surface protein, LPXTG-anchored	NA	NA	NA	NA	NA
WP_159301130.1|989827_990595_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_022668584.1|990576_990783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301131.1|990769_991531_-|protease	matrixin family metalloprotease	protease	G9I094	Helicoverpa_zea_nudivirus	53.1	1.7e-05
WP_159301132.1|991884_995244_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_019884688.1|995392_995686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301133.1|995777_996176_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_011674626.1|996326_996428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301134.1|997961_999617_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	23.3	9.8e-19
WP_003605483.1|999723_999987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566249.1|1000198_1000531_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_159301135.1|1001569_1003240_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_159301136.1|1003344_1004298_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_159301137.1|1004441_1005419_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003659259.1|1005528_1005840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301138.1|1005890_1006979_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	29.6	3.0e-16
WP_095593705.1|1008136_1009057_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	3.1e-22
WP_123019530.1|1009977_1010538_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_159301139.1|1012032_1012820_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	1133771	1144047	2667255	transposase,protease	Streptococcus_phage(16.67%)	9	NA	NA
WP_003566014.1|1133771_1135346_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	26.0	3.4e-29
WP_159301321.1|1135514_1136423_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	29.6	5.4e-11
WP_003597552.1|1136359_1137058_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_003570563.1|1137148_1137442_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_003658650.1|1137562_1139659_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.8	9.3e-115
WP_003566008.1|1140007_1140199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566007.1|1140342_1140609_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_003602661.1|1140608_1142336_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	30.8	2.9e-21
WP_003602660.1|1142634_1144047_+	sugar porter family MFS transporter	NA	O13311	Aichi_virus	27.5	1.9e-26
>prophage 8
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	1747697	1840143	2667255	transposase,tRNA	unidentified_phage(15.38%)	85	NA	NA
WP_003574021.1|1747697_1748618_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_003569937.1|1748797_1749133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003564917.1|1749125_1749311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003598381.1|1749590_1751021_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_016377049.1|1752418_1753417_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.5	3.0e-55
WP_159301229.1|1753561_1753939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080595781.1|1753886_1754795_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	4.9e-12
WP_003597552.1|1754731_1755430_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_159301230.1|1756107_1756215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003569930.1|1757949_1758432_+	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_080595803.1|1758623_1758884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003598368.1|1759327_1759795_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_118988682.1|1759907_1760825_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_159301231.1|1761211_1762375_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_114657296.1|1763028_1763880_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_003598360.1|1763960_1764491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003598358.1|1764672_1764960_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_159301232.1|1765061_1765841_+	DUF1829 domain-containing protein	NA	NA	NA	NA	NA
WP_003566494.1|1766188_1767529_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003566496.1|1767742_1768600_-	glucose transporter GlcU	NA	NA	NA	NA	NA
WP_019728331.1|1768748_1769765_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_003574510.1|1769963_1770569_-	VanZ family protein	NA	NA	NA	NA	NA
WP_003578622.1|1771034_1773290_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	44.7	9.5e-158
WP_003598335.1|1773375_1774122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566504.1|1774131_1774701_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003598332.1|1774823_1776119_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	30.1	9.4e-17
WP_123155862.1|1776188_1777298_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_003566511.1|1777318_1778647_-	purine permease	NA	Q9KX94	Enterobacteria_phage	31.7	1.6e-35
WP_148038189.1|1778653_1779232_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_123155864.1|1779422_1780058_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	47.7	8.4e-27
WP_159301233.1|1780063_1780546_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003566521.1|1780787_1780988_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	1.2e-19
WP_003598322.1|1781667_1781880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003566523.1|1781945_1782911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003590400.1|1783038_1783677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003569858.1|1783764_1784694_+	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	48.1	6.0e-74
WP_114657871.1|1784942_1785011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114657869.1|1785059_1786799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123155861.1|1787109_1789773_+	YfhO family protein	NA	NA	NA	NA	NA
WP_003590391.1|1790287_1790434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096836489.1|1791337_1792201_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	1.4e-24
WP_079322958.1|1792197_1792494_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_159301234.1|1792688_1793531_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	99.6	4.6e-158
WP_159301235.1|1793584_1793836_-|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	96.4	1.2e-37
WP_003574021.1|1794841_1795762_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_159301236.1|1796793_1797810_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.1	5.4e-36
WP_159301324.1|1798593_1799223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003564538.1|1800118_1801033_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	49.0	2.9e-73
WP_003600190.1|1801238_1802255_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.6	6.4e-37
WP_003569800.1|1802379_1803453_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_003564534.1|1803831_1804041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003598307.1|1804056_1804314_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_003598306.1|1804532_1805594_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_159301237.1|1805872_1806697_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003564526.1|1806947_1807409_+	flavodoxin	NA	NA	NA	NA	NA
WP_003601953.1|1807494_1808502_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_003601952.1|1808642_1810016_-	DUF2252 domain-containing protein	NA	NA	NA	NA	NA
WP_003598293.1|1810405_1811014_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003661232.1|1811117_1811285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003598292.1|1811338_1812574_+	aminopeptidase	NA	NA	NA	NA	NA
WP_003598291.1|1812727_1814506_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	35.4	3.0e-74
WP_003564514.1|1814591_1815314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003564512.1|1815611_1816034_-	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_003569787.1|1816107_1816476_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003578577.1|1816475_1817762_-	DEAD/DEAH box helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	26.6	2.1e-32
WP_003564506.1|1817775_1818729_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_003598290.1|1819075_1819432_+	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_003564501.1|1819643_1820000_-	YxeA family protein	NA	NA	NA	NA	NA
WP_003574445.1|1820132_1820870_-	lysozyme	NA	NA	NA	NA	NA
WP_003564497.1|1821622_1821817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003578571.1|1821902_1822829_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
WP_159301056.1|1823102_1824119_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.9e-36
WP_003574021.1|1824253_1825174_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_003569778.1|1825333_1826206_+	DegV family protein	NA	NA	NA	NA	NA
WP_003598288.1|1826503_1826956_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003601919.1|1827041_1828466_-	MFS transporter	NA	NA	NA	NA	NA
WP_159301238.1|1828585_1830490_-	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	26.4	9.5e-58
WP_159301239.1|1830658_1831534_+	polyphosphate kinase 2 family protein	NA	NA	NA	NA	NA
WP_003574432.1|1831613_1832426_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_029507390.1|1832478_1833690_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	34.1	1.2e-53
WP_003587594.1|1834283_1835648_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	51.3	8.1e-128
WP_003564476.1|1835649_1836684_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	28.1	2.2e-16
WP_003578560.1|1836956_1838387_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_003598273.1|1838388_1839843_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_003564470.1|1839846_1840143_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
>prophage 9
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	1857525	1911814	2667255	head,tail,terminase,transposase,portal,capsid,integrase	Lactobacillus_phage(22.22%)	58	1854345:1854361	1902626:1902642
1854345:1854361	attL	TTTAAAGCCATTTTCCC	NA	NA	NA	NA
WP_003598255.1|1857525_1857819_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_016386356.1|1857874_1859419_-|capsid	phage major capsid protein	capsid	B8R651	Lactobacillus_phage	25.3	5.7e-37
WP_159301241.1|1859405_1860587_-|portal	phage portal protein	portal	A0A2H4JB06	uncultured_Caudovirales_phage	35.5	1.3e-60
WP_003598251.1|1860591_1860771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002816285.1|1860922_1861174_+|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	96.4	9.2e-38
WP_159301242.1|1861227_1862070_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.9	2.0e-156
WP_071799072.1|1863150_1863621_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_071799070.1|1863737_1864160_-	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	45.4	5.4e-22
WP_071799068.1|1864156_1864342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016386312.1|1864346_1864682_-|head	phage head closure protein	head	Q6J1Y0	Lactobacillus_phage	41.6	6.0e-16
WP_159301243.1|1865003_1866596_-	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	27.9	2.7e-26
WP_003597552.1|1867158_1867857_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	31.7	2.3e-22
WP_080595781.1|1867793_1868702_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.2	4.9e-12
WP_003601855.1|1868787_1869063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601854.1|1869108_1869300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601852.1|1869410_1869632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601850.1|1869698_1869974_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_016366757.1|1870153_1870711_+	helix-turn-helix domain-containing protein	NA	Q4ZC20	Staphylococcus_virus	42.6	2.5e-06
WP_016386341.1|1870817_1871966_+|integrase	site-specific integrase	integrase	A0A097BYJ7	Leuconostoc_phage	29.6	7.0e-32
WP_003569727.1|1872237_1872546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003578534.1|1872561_1872684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016386340.1|1872816_1875108_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_159301244.1|1875385_1876255_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_003601841.1|1876251_1877208_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_003564420.1|1877208_1878048_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_159301245.1|1878044_1878809_-	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_003601839.1|1879008_1880397_-	amino acid permease	NA	NA	NA	NA	NA
WP_003598235.1|1880535_1880994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003598234.1|1881212_1882223_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003598233.1|1882325_1882658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301246.1|1882641_1883103_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_003598230.1|1883062_1883299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301247.1|1883343_1883784_-	competence protein ComGC	NA	NA	NA	NA	NA
WP_003564402.1|1883780_1884104_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_019728331.1|1884363_1885380_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_004559595.1|1885409_1886252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123155844.1|1886248_1887115_-	Flp pilus assembly complex ATPase component	NA	NA	NA	NA	NA
WP_003564397.1|1887239_1887971_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004559593.1|1888041_1888533_-	VanZ family protein	NA	NA	NA	NA	NA
WP_159301248.1|1888607_1890413_+	M3 family oligoendopeptidase	NA	NA	NA	NA	NA
WP_003569704.1|1890620_1892432_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1GV45	Paramecium_bursaria_Chlorella_virus	37.5	4.4e-89
WP_004559590.1|1892747_1894112_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003598218.1|1894133_1895222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003598215.1|1895218_1896076_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_003574320.1|1896339_1897074_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.8	2.5e-27
WP_016385771.1|1897063_1898203_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003584127.1|1898240_1898885_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004559588.1|1898988_1901781_+	cation-transporting P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.0	2.1e-74
WP_003564370.1|1901999_1902194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003564368.1|1902263_1902458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003569694.1|1902799_1903873_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1902626:1902642	attR	TTTAAAGCCATTTTCCC	NA	NA	NA	NA
WP_003564363.1|1903856_1904696_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003564360.1|1904685_1905510_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	25.9	1.3e-11
WP_003564358.1|1905609_1906698_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	42.6	9.9e-36
WP_003564356.1|1906711_1907251_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_003564354.1|1907556_1909665_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_050568875.1|1909686_1910556_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_096835977.1|1910893_1911814_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.5	2.6e-21
>prophage 10
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	2006443	2113203	2667255	tRNA,tail,terminase,transposase,protease,holin,integrase	Lactobacillus_phage(60.0%)	108	1994165:1994224	2110931:2112410
1994165:1994224	attL	CGTCAAGTAGAGTTGATAGATCTTTTGTGAAGCATCTAGGCCTTAATTGGTCTAGATGCT	NA	NA	NA	NA
WP_003601708.1|2006443_2006953_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_003601706.1|2007207_2008050_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003564155.1|2008115_2009063_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003564154.1|2009290_2010280_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	71.9	8.2e-138
WP_003564153.1|2010407_2010677_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_003564152.1|2010788_2011166_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_003564151.1|2011437_2012478_+	lactonase family protein	NA	NA	NA	NA	NA
WP_128528278.1|2012683_2013682_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.5	3.0e-55
WP_003564150.1|2013800_2014619_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_003583942.1|2014640_2015276_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_003569478.1|2015432_2016491_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_003601681.1|2016599_2017502_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003564146.1|2017501_2018299_-	NAD kinase	NA	NA	NA	NA	NA
WP_003564145.1|2018300_2018972_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_003601679.1|2019165_2019759_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_003601677.1|2019828_2020464_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_159301256.1|2020653_2021709_-	competence protein	NA	NA	NA	NA	NA
WP_003574245.1|2021818_2023162_-	PFL family protein	NA	NA	NA	NA	NA
WP_003564140.1|2023210_2023477_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_159301257.1|2023667_2024996_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_159301258.1|2025129_2026335_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_003601666.1|2026679_2027153_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_003601664.1|2027240_2028800_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_159301259.1|2028827_2030327_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_003564134.1|2030790_2031294_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_159301260.1|2031290_2032112_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003564132.1|2032228_2032444_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003601658.1|2032586_2033297_-	pseudouridine synthase	NA	NA	NA	NA	NA
WP_003601656.1|2033301_2034945_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_016377888.1|2035031_2035142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016377889.1|2035210_2037622_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	68.4	0.0e+00
WP_159301261.1|2038076_2038760_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003601651.1|2038860_2039586_-	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
WP_003601650.1|2039582_2041061_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003569429.1|2041302_2041773_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003601649.1|2041870_2043364_-	MFS transporter	NA	NA	NA	NA	NA
WP_003601648.1|2043477_2044662_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	65.7	7.3e-141
WP_003601647.1|2044842_2045490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601646.1|2046226_2046943_-	GepA family protein	NA	A0A0C5ABL3	Bacteriophage	27.3	9.2e-14
WP_016378261.1|2046942_2047560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601645.1|2047617_2048916_-	LysM peptidoglycan-binding domain-containing protein	NA	B4XYQ9	Lactobacillus_phage	95.4	4.4e-224
WP_016378260.1|2048926_2049373_-|holin	phage holin	holin	A8YQK6	Lactobacillus_phage	92.6	9.3e-65
WP_003601643.1|2049365_2049668_-	hypothetical protein	NA	B4XYQ7	Lactobacillus_phage	89.0	4.4e-42
WP_003601642.1|2049697_2049829_-	XkdX family protein	NA	A0A0P0HRS7	Lactobacillus_phage	93.0	9.4e-18
WP_003601641.1|2049821_2050112_-	hypothetical protein	NA	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	55.2	1.5e-23
WP_159301262.1|2050113_2053041_-|tail	phage tail protein	tail	Q3L0S2	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	64.6	0.0e+00
WP_159301056.1|2054692_2055709_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.9e-36
WP_003603967.1|2061587_2061905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114650372.1|2061979_2062216_-	Ig domain-containing protein	NA	B8QTT6	Erwinia_phage	56.0	4.5e-10
WP_003603964.1|2063210_2063624_-	hypothetical protein	NA	A0A2P0ZLD7	Lactobacillus_phage	54.1	7.8e-34
WP_003603962.1|2063620_2064001_-	hypothetical protein	NA	M9QX19	Staphylococcus_phage	32.7	6.1e-09
WP_003603960.1|2063993_2064284_-	hypothetical protein	NA	A0A1S5SF81	Streptococcus_phage	49.4	2.0e-15
WP_123156114.1|2064276_2064423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603956.1|2065611_2066340_-|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	40.5	6.4e-39
WP_016378041.1|2067638_2069327_-|terminase	terminase large subunit	terminase	A0A2P0ZLE5	Lactobacillus_phage	52.1	1.4e-169
WP_003572621.1|2069323_2069542_-	hypothetical protein	NA	D2XR14	Bacillus_phage	41.1	1.2e-06
WP_029507455.1|2069775_2070111_-	HNH endonuclease	NA	A0A2H4J213	uncultured_Caudovirales_phage	53.8	4.9e-26
WP_016378045.1|2070282_2070615_-	hypothetical protein	NA	A0A0P0IJY9	Lactobacillus_phage	84.8	3.4e-48
WP_003603816.1|2070601_2071819_-	phage protein	NA	A8YQN3	Lactobacillus_phage	97.3	2.1e-236
WP_003582255.1|2072239_2072458_+	CsbD family protein	NA	NA	NA	NA	NA
WP_159301263.1|2072560_2073007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601727.1|2072964_2073492_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.2	8.8e-22
WP_096836489.1|2074557_2075421_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	1.4e-24
WP_079322958.1|2075417_2075714_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_016378922.1|2075796_2076240_-	autolysin regulatory protein ArpU	NA	A0A0P0IZI6	Lactobacillus_phage	98.6	8.6e-79
WP_003603644.1|2076725_2076944_-	helix-turn-helix transcriptional regulator	NA	A0A0P0IJR0	Lactobacillus_phage	94.4	3.9e-32
WP_080596458.1|2076956_2077025_-	hypothetical protein	NA	A0A0P0I3I8	Lactobacillus_phage	100.0	4.7e-05
WP_016378915.1|2077215_2077398_-	hypothetical protein	NA	A0A0P0I365	Lactobacillus_phage	61.7	1.2e-15
WP_003603645.1|2077721_2078111_-	hypothetical protein	NA	C1KFE5	Lactobacillus_virus	70.3	1.0e-43
WP_003603648.1|2078100_2078517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603649.1|2078506_2078710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603650.1|2078699_2079233_-	DUF1642 domain-containing protein	NA	Q6J1U8	Lactobacillus_phage	55.6	3.7e-36
WP_018041572.1|2079229_2079514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603652.1|2079647_2080112_-	hypothetical protein	NA	A0A0P0IXF6	Lactobacillus_phage	96.1	5.5e-20
WP_032957370.1|2080124_2080526_-	RusA family crossover junction endodeoxyribonuclease	NA	A8YQM5	Lactobacillus_phage	71.5	4.4e-50
WP_123156110.1|2080567_2080912_-	hypothetical protein	NA	U5U420	Lactobacillus_phage	95.6	4.5e-59
WP_003603655.1|2080913_2082176_-	replicative DNA helicase	NA	U5U3Y9	Lactobacillus_phage	97.6	1.7e-233
WP_003603657.1|2082172_2083006_-	helix-turn-helix domain-containing protein	NA	A0A2D1GPH5	Lactobacillus_phage	77.3	5.1e-117
WP_016379010.1|2082998_2083313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603662.1|2083493_2084069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016379011.1|2084267_2084360_-	hypothetical protein	NA	A0A0P0IZE0	Lactobacillus_phage	96.7	5.9e-11
WP_003582403.1|2084359_2084716_-	DUF771 domain-containing protein	NA	U5U4L9	Lactobacillus_phage	99.2	2.4e-63
WP_159301264.1|2084782_2085034_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_003603664.1|2085026_2085206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080596457.1|2085206_2085983_-	hypothetical protein	NA	A0A1B0YEA7	Lactobacillus_phage	52.3	1.3e-42
WP_016378613.1|2086013_2086346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003603671.1|2086460_2086709_-	hypothetical protein	NA	A0A0P0ID24	Lactobacillus_phage	97.4	4.5e-37
WP_016378612.1|2086967_2087309_+	helix-turn-helix transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	43.0	5.5e-17
WP_016378611.1|2087301_2087724_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1B0Y2S4	Lactobacillus_phage	40.3	2.9e-23
WP_003603674.1|2087790_2088462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003661643.1|2088546_2088654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019728331.1|2088840_2089857_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_159301265.1|2090066_2090687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003603877.1|2090776_2091037_+	hypothetical protein	NA	B4XYT0	Lactobacillus_phage	40.7	4.2e-09
WP_016378217.1|2091143_2092271_+|integrase	site-specific integrase	integrase	B4XYR4	Lactobacillus_phage	98.1	4.9e-211
WP_003564091.1|2097960_2098401_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_003601628.1|2098593_2100687_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	46.8	8.0e-151
WP_003564089.1|2100792_2100933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601625.1|2100917_2101196_-	YkuJ family protein	NA	NA	NA	NA	NA
WP_016378905.1|2101441_2102617_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_159301266.1|2103090_2104104_-	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_003564079.1|2104116_2105145_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003569394.1|2105147_2106356_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003601618.1|2106642_2108361_-	APC family permease	NA	NA	NA	NA	NA
WP_003564071.1|2108738_2109287_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003585301.1|2111074_2111272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003585300.1|2111246_2111600_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011674296.1|2111700_2113203_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
2110931:2112410	attR	AGCATCTAGACCAATTAAGGCCTAGATGCTTCACAAAAGATCTATCAACTCTACTTGACGGTATGCGTCACATAGTGCAGTACCTATAATTGTCAAAATCCTCCCTCTATACTTGGTCTATCAAGAAGATTGGAGGATTTCTTTATGACTCAAACCAATGATCTGGTTCCAATCCAAATGGTCAATCGCGACGGTGCCGCCGTCGTGGTGAAACCCAAACTAGGAGCCAAAATTAAACTAAACGAAGCCGAAGTCCTTTTCTACAATGGCATCGATAAGGTGATGGCCCGGATTATTTTGCAGGAGTTGATGGCCCATGATACCCGACCTGTCCAAAGCTAACATTTACATCATTTGCGGTCGCACCGATCTGCGAAAAGGCATTGATGGCTTGGCGGCCTTGGTCACGGAGGAGTACAAGATGGATGTGTTCGACAATGCGTTATTCATCTTCTGTGGTACCCGTAAGGATCGTTTCAAAGCACTGTATTGGACCAAAAGTGGTTTTCTGCTTTTATACAAGCGCTTTGAAAACGGCTATATGCAATGGCCGCGCGATCGCAGTGAAATTCGCCGTTTGAATTATCGTCAAATGTCACGTCTGGTCAATGGTTTAGCCATTGAAGAACGCCGTACCATTCAGCCTGTAACCCCGGGGTATGTGTACTGATTGTCTGAAAGAAAGTCTTTTCTTGAAGCTGACGAAAAGGCTTTCTTTTCGTGTGGCCGCTTGATATACTTTTTTCAACCATTTTAACGGAGGGCGCGAGATGTCAGCGGAAGCAGTCGTGACGACAGAACAATTCGAATATCTCAAACAAGAGAACGCGCTGCTTCGCGAACAAGTCGAGTTCTTAATGCGGCGCCTGTACGGCACTAAGCGTGAAAGTCTCACTGACGGTCAGGTTGATCTCTTTGATCAAACCAAAACCTTTGTGGCGCCAACAGTTCCTGAACCAGAAGAGCAAGATGACAAACCTGCAAAACGTAAAAAACAAAAAGGCAGGAAAGCAGCGCAACTGGCTCCTTTTCCTGAAGTGGCTGTGCACCACGAACTAACCGGAGCGGAACGCCAGTGCCCACATTGTGCCGCTGAGATGCGTGAAATTGGGGCCACGGCGACCAGCCGCGAACCGGTTCGGATTCCGGAACACGTTGAAGTCCACGTCCACTATCAGCACGCCTATGAATGTCGCCAGTGTTCCAATCAGTTAGATCACAGCGTCATCAAAAAGGCGATAGTGCCGAAGCCGTTCATTCCTAACAGCTTTGCCTCACCAAGCATCCTAACCCAAACGATGATCGAAAAGTATCGTAAAAAGGTCCCAGCCTATCGCCAGATAAAGGATTGGGGAGACTTGGGGCTCGAACTAACCCGCCAACAAATCACCAACTGGCACATTCGGGCTTGTGACTATGGGTTAGGCAATCTCTACGAACTGATGCATCAAACACTGCTCAAACAAACCGTCGTCCACGC	NA	NA	NA	NA
>prophage 11
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	2224284	2262290	2667255	transposase	unidentified_phage(22.22%)	39	NA	NA
WP_003577790.1|2224284_2225487_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	46.3	3.3e-88
WP_003603796.1|2225784_2226360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003574021.1|2226430_2227351_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	5.3e-22
WP_080596462.1|2227400_2227850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096835997.1|2227913_2228930_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.4e-36
WP_159301274.1|2228959_2229739_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.4	2.5e-09
WP_003601451.1|2229741_2230713_-	permease component of an ABC superfamily transporter	NA	NA	NA	NA	NA
WP_003601449.1|2230915_2231884_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003601448.1|2232442_2233399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_016386130.1|2233880_2236268_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_003563795.1|2236978_2237629_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003569200.1|2237858_2238689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563792.1|2238681_2239743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003601446.1|2239912_2240734_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_018041508.1|2240805_2241438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601442.1|2241671_2242196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003563777.1|2242273_2242453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601438.1|2242449_2243118_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003601436.1|2243120_2243906_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003601434.1|2244116_2245220_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003601432.1|2245562_2245796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003573966.1|2245789_2246266_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_016386124.1|2246666_2246789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563758.1|2247097_2247241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601419.1|2247339_2250465_-	SMC family ATPase	NA	A0A193GZI3	Escherichia_phage	23.4	7.3e-07
WP_003601417.1|2250464_2251586_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_003601415.1|2251646_2252273_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_003601413.1|2252718_2253495_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.8	8.7e-18
WP_003573960.1|2253499_2253928_+	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
WP_003601410.1|2253972_2254491_+	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
WP_003601408.1|2254529_2255531_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_003569169.1|2255645_2256584_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_003577963.1|2256605_2257286_+	DUF4867 family protein	NA	NA	NA	NA	NA
WP_003569166.1|2257729_2257924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159301275.1|2258132_2259149_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	4.2e-36
WP_080638873.1|2259357_2259678_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_159301276.1|2260071_2260755_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_159301328.1|2261095_2261248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096836470.1|2261369_2262290_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	6.9e-22
>prophage 12
NZ_CP044361	Lactobacillus paracasei strain TD 062 chromosome, complete genome	2667255	2465800	2536149	2667255	transposase,protease,tRNA	Bacillus_virus(21.43%)	60	NA	NA
WP_003567794.1|2465800_2466817_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003599990.1|2467235_2468561_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_159301294.1|2468566_2469526_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.9	6.7e-28
WP_159301295.1|2469525_2471058_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003599996.1|2471591_2473880_+	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_159301296.1|2474014_2474848_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003600000.1|2474872_2475844_-	TDT family transporter	NA	NA	NA	NA	NA
WP_003600002.1|2476279_2476924_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003600045.1|2477447_2478122_-	HD domain-containing protein	NA	S4W232	Pandoravirus	31.4	1.3e-14
WP_003600048.1|2478249_2478666_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003600050.1|2478878_2479046_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_003600052.1|2479046_2481407_+	hypothetical protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.2	5.9e-110
WP_003600054.1|2481472_2482477_-	aryl-alcohol dehydrogenase-related enzyme	NA	NA	NA	NA	NA
WP_003603483.1|2482777_2483590_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003567827.1|2483652_2483997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567829.1|2484304_2484568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016378948.1|2484651_2484858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003600061.1|2484856_2485534_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_003567833.1|2485539_2486226_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003567836.1|2486270_2487083_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003600063.1|2487179_2487662_+	ribonuclease HI	NA	A0A0H3UZB5	Geobacillus_virus	38.1	3.1e-21
WP_003567840.1|2487667_2488570_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003600064.1|2488819_2490022_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	27.5	1.6e-23
WP_003600065.1|2490326_2491520_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	60.3	5.5e-104
WP_003567846.1|2491920_2492619_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_003603493.1|2492776_2493250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003561810.1|2493266_2494196_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_159301297.1|2494880_2496863_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003603502.1|2496866_2497796_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_003567854.1|2497921_2498674_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_159301298.1|2498778_2500293_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003577790.1|2500893_2502096_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	46.3	3.3e-88
WP_003601468.1|2502328_2503816_-	PTS galactitol IIC component	NA	NA	NA	NA	NA
WP_003600074.1|2503847_2504168_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003576630.1|2504199_2504679_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_114657478.1|2504884_2505682_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_003600076.1|2505937_2506786_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003600077.1|2507292_2508975_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_086440923.1|2509124_2509310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003600078.1|2509435_2510185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003600079.1|2510797_2511442_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_003600080.1|2511510_2512200_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_159301299.1|2512357_2514322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301300.1|2514324_2515266_-	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	38.6	3.0e-49
WP_159301301.1|2515335_2516498_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.5	1.9e-29
WP_003599199.1|2516874_2518311_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.6	9.9e-100
WP_003603585.1|2518344_2518905_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.8	9.3e-30
WP_003599197.1|2518998_2519730_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003599196.1|2520126_2520375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011674977.1|2520438_2521455_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	2.4e-36
WP_071798850.1|2526857_2527037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003603595.1|2527048_2527834_-	serine hydrolase	NA	NA	NA	NA	NA
WP_003603597.1|2527823_2528891_-	dipeptide epimerase	NA	NA	NA	NA	NA
WP_159301302.1|2528878_2529901_-	serine hydrolase	NA	NA	NA	NA	NA
WP_003603601.1|2529887_2530805_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_159301303.1|2530731_2531664_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_003568129.1|2531660_2532146_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003568131.1|2532212_2533049_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_003603604.1|2533041_2533878_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_096835997.1|2535132_2536149_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.4	1.4e-36
>prophage 1
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	0	6282	66622	transposase	Enterococcus_phage(100.0%)	3	NA	NA
WP_159301374.1|3927_4713_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003582590.1|5021_5408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003582592.1|5400_6282_-	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	35.6	5.0e-38
>prophage 2
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	17291	19744	66622	transposase	unidentified_phage(50.0%)	2	NA	NA
WP_159301377.1|17291_18221_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	29.5	2.0e-24
WP_003603806.1|18832_19744_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	41.4	3.1e-59
>prophage 3
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	24940	34476	66622	transposase	Lactobacillus_phage(33.33%)	8	NA	NA
WP_004559687.1|24940_26821_+	beta-galactosidase large subunit	NA	L0N6M2	Herpes_simplex_virus	35.6	2.9e-99
WP_004559688.1|26804_27764_+	beta-galactosidase	NA	NA	NA	NA	NA
WP_003603751.1|29020_29551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003603753.1|29565_30525_+	D-2-hydroxyacid dehydrogenase	NA	A0A2R8FCS0	Cedratvirus	30.3	3.3e-27
WP_159301379.1|30495_31440_-	DNA repair protein	NA	M1Q231	Streptococcus_phage	39.5	1.1e-22
WP_159301380.1|32504_33188_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	50.9	3.1e-59
WP_159301333.1|33329_33581_+|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	95.2	2.1e-37
WP_159301390.1|33732_34476_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.4	4.4e-136
>prophage 4
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	40181	41312	66622		Mycoplasma_phage(100.0%)	1	NA	NA
WP_159301382.1|40181_41312_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	31.3	1.4e-21
>prophage 5
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	51310	53567	66622	transposase	Lactobacillus_phage(50.0%)	3	NA	NA
WP_096836489.1|51310_52174_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	1.4e-24
WP_079322958.1|52170_52467_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_159301064.1|52646_53567_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.6	9.9e-37
>prophage 6
NZ_CP044366	Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence	66622	56671	63948	66622	transposase	Lactobacillus_phage(40.0%)	9	NA	NA
WP_159301386.1|56671_57355_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.8e-60
WP_159301387.1|57444_59124_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_159301391.1|59328_60072_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.0	1.3e-135
WP_011674191.1|60080_60476_-|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	93.6	7.5e-34
WP_159301388.1|60628_61027_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003563277.1|61139_61511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016363781.1|62191_62476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159301346.1|62481_63132_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	37.6	1.5e-18
WP_159301392.1|63279_63948_-	methyltransferase domain-containing protein	NA	A0A1V0SDW7	Indivirus	34.8	8.3e-09
