assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	1	151682-151766	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	5	151708-151740|151708-151740|151708-151740|151708-151740|151708-151740	NZ_CP047321.1_1492822-1492790|NZ_CP047321.1_2694564-2694532|NZ_CP047321.1_1402511-1402543|NZ_CP047321.1_1779234-1779266|NZ_CP047321.1_2089166-2089198	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|402aa|up_9|NZ_CP047321.1_140828_142034_+,NA|68aa|down_0|NZ_CP047321.1_151827_152031_-	NA|402aa|up_9|NZ_CP047321.1_140828_142034_+	NA	NA|402aa|up_8|NZ_CP047321.1_142034_143240_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP047321.1_143250_143808_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP047321.1_143807_144695_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP047321.1_144748_146011_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP047321.1_146087_147233_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP047321.1_147297_147624_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP047321.1_147630_148014_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|502aa|up_1|NZ_CP047321.1_148440_149946_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP047321.1_150573_151533_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP047321.1_151827_152031_-	NA	NA|171aa|down_1|NZ_CP047321.1_152207_152720_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP047321.1_153061_153802_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP047321.1_153815_154790_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP047321.1_154786_155548_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP047321.1_155560_156592_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP047321.1_156808_157168_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP047321.1_157340_158366_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP047321.1_158751_160002_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|215aa|down_9|NZ_CP047321.1_167635_168280_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	2	686014-686164	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_2|NZ_CP047321.1_683373_683466_-,NA|35aa|up_0|NZ_CP047321.1_685577_685682_+,NA|364aa|down_0|NZ_CP047321.1_686181_687273_-,NA|77aa|down_5|NZ_CP047321.1_691061_691292_+	NA|369aa|up_9|NZ_CP047321.1_672986_674093_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP047321.1_674092_674527_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP047321.1_674538_676671_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP047321.1_676705_678244_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP047321.1_678924_680730_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP047321.1_680961_681744_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP047321.1_681811_682669_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP047321.1_683373_683466_-	NA	NA|379aa|up_1|NZ_CP047321.1_683754_684891_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047321.1_685577_685682_+	NA	NA|364aa|down_0|NZ_CP047321.1_686181_687273_-	NA	NA|327aa|down_1|NZ_CP047321.1_687538_688519_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047321.1_688520_688841_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047321.1_688992_689658_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047321.1_690092_691031_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047321.1_691061_691292_+	NA	NA|458aa|down_6|NZ_CP047321.1_691963_693337_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047321.1_693794_694208_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047321.1_694407_694851_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047321.1_694971_695682_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	3	1704597-1704682	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	1704627-1704652|1704627-1704652|1704627-1704652|1704627-1704652|1704627-1704652	NZ_CP047321.1_2694484-2694509|NZ_CP047321.1_2126229-2126254|NZ_CP047321.1_1922678-1922703|NZ_CP047321.1_2126173-2126198|NZ_CP047321.1_2126285-2126310	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|76aa|up_6|NZ_CP047321.1_1697394_1697622_-,NA|75aa|down_0|NZ_CP047321.1_1704921_1705146_-,NA|49aa|down_1|NZ_CP047321.1_1705102_1705249_-,NA|78aa|down_3|NZ_CP047321.1_1707357_1707591_+,NA|62aa|down_4|NZ_CP047321.1_1708212_1708398_+,NA|169aa|down_7|NZ_CP047321.1_1710479_1710986_-,NA|31aa|down_9|NZ_CP047321.1_1712018_1712111_+	NA|45aa|up_9|NZ_CP047321.1_1694659_1694794_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP047321.1_1695705_1695894_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP047321.1_1696142_1697090_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP047321.1_1697394_1697622_-	NA	NA|502aa|up_5|NZ_CP047321.1_1697929_1699435_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP047321.1_1699657_1700590_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP047321.1_1700612_1701614_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP047321.1_1702051_1702777_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP047321.1_1702871_1703597_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP047321.1_1703704_1704421_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047321.1_1704921_1705146_-	NA	NA|49aa|down_1|NZ_CP047321.1_1705102_1705249_-	NA	NA|320aa|down_2|NZ_CP047321.1_1705921_1706881_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047321.1_1707357_1707591_+	NA	NA|62aa|down_4|NZ_CP047321.1_1708212_1708398_+	NA	NA|117aa|down_5|NZ_CP047321.1_1709219_1709570_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047321.1_1709723_1710221_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047321.1_1710479_1710986_-	NA	NA|134aa|down_8|NZ_CP047321.1_1711657_1712059_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_9|NZ_CP047321.1_1712018_1712111_+	NA
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	4	1708616-1708860	1	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCCCGCCAACTTGCANNNT	19	1	4	1708805-1708841|1708805-1708841|1708805-1708841|1708805-1708841	NZ_CP047321.1_809478-809442|NZ_CP047321.1_2663451-2663487|NZ_CP047321.1_2663507-2663543|NZ_CP047321.1_2663563-2663599	NA	4	4	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|75aa|up_4|NZ_CP047321.1_1704921_1705146_-,NA|49aa|up_3|NZ_CP047321.1_1705102_1705249_-,NA|78aa|up_1|NZ_CP047321.1_1707357_1707591_+,NA|62aa|up_0|NZ_CP047321.1_1708212_1708398_+,NA|169aa|down_2|NZ_CP047321.1_1710479_1710986_-,NA|31aa|down_4|NZ_CP047321.1_1712018_1712111_+,NA|56aa|down_6|NZ_CP047321.1_1712950_1713118_-	NA|311aa|up_9|NZ_CP047321.1_1699657_1700590_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP047321.1_1700612_1701614_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP047321.1_1702051_1702777_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP047321.1_1702871_1703597_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP047321.1_1703704_1704421_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP047321.1_1704921_1705146_-	NA	NA|49aa|up_3|NZ_CP047321.1_1705102_1705249_-	NA	NA|320aa|up_2|NZ_CP047321.1_1705921_1706881_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP047321.1_1707357_1707591_+	NA	NA|62aa|up_0|NZ_CP047321.1_1708212_1708398_+	NA	NA|117aa|down_0|NZ_CP047321.1_1709219_1709570_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP047321.1_1709723_1710221_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP047321.1_1710479_1710986_-	NA	NA|134aa|down_3|NZ_CP047321.1_1711657_1712059_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|NZ_CP047321.1_1712018_1712111_+	NA	NA|110aa|down_5|NZ_CP047321.1_1712427_1712757_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP047321.1_1712950_1713118_-	NA	NA|168aa|down_7|NZ_CP047321.1_1713245_1713749_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP047321.1_1713741_1714329_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP047321.1_1714340_1715141_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	5	1922681-1922759	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	1	1	1922704-1922736	NZ_CP047321.1_2030206-2030174	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|101aa|down_5|NZ_CP047321.1_1928524_1928827_+,NA|87aa|down_8|NZ_CP047321.1_1931213_1931474_+	NA|301aa|up_9|NZ_CP047321.1_1906689_1907592_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047321.1_1907757_1911411_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047321.1_1911411_1914888_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047321.1_1915047_1915623_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047321.1_1915638_1916163_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047321.1_1916167_1916743_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047321.1_1917067_1918399_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047321.1_1918749_1919955_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047321.1_1919944_1921324_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047321.1_1921565_1922495_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047321.1_1922883_1924128_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047321.1_1924236_1925427_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047321.1_1925734_1926862_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047321.1_1927223_1927601_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|107aa|down_4|NZ_CP047321.1_1928190_1928511_+	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|101aa|down_5|NZ_CP047321.1_1928524_1928827_+	NA	NA|364aa|down_6|NZ_CP047321.1_1929001_1930093_+	pfam02486, Rep_trans, Replication initiation factor	NA|352aa|down_7|NZ_CP047321.1_1930153_1931209_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|87aa|down_8|NZ_CP047321.1_1931213_1931474_+	NA	NA|128aa|down_9|NZ_CP047321.1_1931485_1931869_+	pfam12648, TcpE, TcpE family
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	6	2030454-2030535	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	2030478-2030511|2030478-2030511	NZ_CP047321.1_1402510-1402543|NZ_CP047321.1_1492823-1492790	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|38aa|down_1|NZ_CP047321.1_2031518_2031632_-	NA|414aa|up_9|NZ_CP047321.1_2020937_2022179_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047321.1_2022293_2023601_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047321.1_2023698_2024460_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047321.1_2024787_2025639_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047321.1_2025871_2026066_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047321.1_2026419_2027241_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047321.1_2027258_2027954_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047321.1_2027946_2028972_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047321.1_2029221_2029518_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047321.1_2029510_2029897_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047321.1_2030638_2031517_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047321.1_2031518_2031632_-	NA	NA|127aa|down_2|NZ_CP047321.1_2031695_2032076_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047321.1_2032233_2032590_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047321.1_2032733_2033054_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047321.1_2033203_2033743_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047321.1_2033825_2034542_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047321.1_2034689_2035112_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047321.1_2035510_2036005_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047321.1_2036159_2036777_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	7	2089247-2089332	6	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	2089277-2089302|2089277-2089302|2089277-2089302|2089277-2089302	NZ_CP047321.1_1922703-1922678|NZ_CP047321.1_2126310-2126285|NZ_CP047321.1_2694509-2694484|NZ_CP047321.1_2126254-2126229	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|NZ_CP047321.1_2077111_2077873_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP047321.1_2077994_2079185_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP047321.1_2079323_2080334_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP047321.1_2080386_2081400_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP047321.1_2082219_2082849_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP047321.1_2083551_2084454_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP047321.1_2084696_2085284_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP047321.1_2085856_2086801_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP047321.1_2086910_2087906_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP047321.1_2087902_2088814_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP047321.1_2089693_2090629_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP047321.1_2090695_2092135_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP047321.1_2092142_2092628_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP047321.1_2092635_2093475_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP047321.1_2093480_2094413_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP047321.1_2095019_2097866_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP047321.1_2097873_2099859_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP047321.1_2100127_2100364_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP047321.1_2100360_2101011_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP047321.1_2101184_2102024_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	8	2094650-2094730	7	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	11	2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704|2094676-2094704	NZ_CP047321.1_1050057-1050029|NZ_CP047321.1_2580183-2580155|NZ_CP047321.1_2580238-2580210|NZ_CP047321.1_367684-367656|NZ_CP047321.1_1704744-1704716|NZ_CP047321.1_151669-151697|NZ_CP047321.1_562007-562035|NZ_CP047321.1_885100-885128|NZ_CP047321.1_1228832-1228860|NZ_CP047321.1_1903150-1903178|NZ_CP047321.1_2030441-2030469	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA|36aa|down_5|NZ_CP047321.1_2102171_2102279_-,NA|35aa|down_7|NZ_CP047321.1_2103711_2103816_-	NA|301aa|up_9|NZ_CP047321.1_2083551_2084454_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047321.1_2084696_2085284_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047321.1_2085856_2086801_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047321.1_2086910_2087906_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047321.1_2087902_2088814_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047321.1_2089693_2090629_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047321.1_2090695_2092135_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047321.1_2092142_2092628_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047321.1_2092635_2093475_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047321.1_2093480_2094413_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047321.1_2095019_2097866_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047321.1_2097873_2099859_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047321.1_2100127_2100364_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047321.1_2100360_2101011_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047321.1_2101184_2102024_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047321.1_2102171_2102279_-	NA	NA|370aa|down_6|NZ_CP047321.1_2102432_2103543_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047321.1_2103711_2103816_-	NA	NA|844aa|down_8|NZ_CP047321.1_2103857_2106389_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047321.1_2106802_2107375_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	9	2253266-2253358	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_CP047321.1_2248133_2248850_-,NA|169aa|up_4|NZ_CP047321.1_2249011_2249518_-,NA|36aa|down_3|NZ_CP047321.1_2256766_2256874_-	NA|75aa|up_9|NZ_CP047321.1_2244255_2244480_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047321.1_2244674_2245604_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047321.1_2246551_2246926_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047321.1_2247176_2247965_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047321.1_2248133_2248850_-	NA	NA|169aa|up_4|NZ_CP047321.1_2249011_2249518_-	NA	NA|267aa|up_3|NZ_CP047321.1_2249653_2250454_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047321.1_2250437_2251157_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047321.1_2251211_2252162_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047321.1_2252309_2253137_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047321.1_2253575_2254211_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047321.1_2254599_2256261_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047321.1_2256257_2256641_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP047321.1_2256766_2256874_-	NA	NA|337aa|down_4|NZ_CP047321.1_2256948_2257959_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP047321.1_2258457_2258979_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP047321.1_2259006_2260302_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP047321.1_2260341_2260818_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP047321.1_2260986_2261523_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP047321.1_2261733_2262672_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_009857055.1_ASM985705v1	NZ_CP047321	Staphylococcus aureus strain RJ1267 chromosome, complete genome	10	2526539-2526640	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|179aa|up_7|NZ_CP047321.1_2518157_2518694_+,NA|221aa|up_1|NZ_CP047321.1_2524785_2525448_+,NA|34aa|down_0|NZ_CP047321.1_2527312_2527414_-,NA|98aa|down_5|NZ_CP047321.1_2532401_2532695_+,NA|128aa|down_7|NZ_CP047321.1_2533648_2534032_+,NA|70aa|down_9|NZ_CP047321.1_2534856_2535066_+	NA|91aa|up_9|NZ_CP047321.1_2516389_2516662_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047321.1_2517060_2517765_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047321.1_2518157_2518694_+	NA	NA|514aa|up_6|NZ_CP047321.1_2518806_2520348_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047321.1_2520372_2521839_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047321.1_2521876_2523145_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047321.1_2523144_2523723_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047321.1_2524235_2524643_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047321.1_2524785_2525448_+	NA	NA|319aa|up_0|NZ_CP047321.1_2525565_2526522_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP047321.1_2527312_2527414_-	NA	NA|463aa|down_1|NZ_CP047321.1_2527498_2528887_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047321.1_2528967_2529723_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047321.1_2530214_2530784_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047321.1_2530799_2532323_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP047321.1_2532401_2532695_+	NA	NA|209aa|down_6|NZ_CP047321.1_2532767_2533394_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP047321.1_2533648_2534032_+	NA	NA|194aa|down_8|NZ_CP047321.1_2534097_2534679_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP047321.1_2534856_2535066_+	NA
