The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043845	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2504425	1062014	1072549	2504425		Staphylococcus_phage(22.22%)	15	NA	NA
WP_001830355.1|1062014_1062854_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.0	1.2e-60
WP_011082622.1|1062995_1063088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830351.1|1063056_1064163_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	43.2	6.3e-62
WP_002438881.1|1064232_1065198_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.6	1.8e-17
WP_001830352.1|1065287_1065977_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
WP_001830332.1|1065951_1066425_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001830329.1|1066475_1066913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010959136.1|1067318_1067417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485887.1|1067508_1067664_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	4.4e-14
WP_001830331.1|1068013_1068613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830330.1|1068714_1069428_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830341.1|1069428_1069848_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830328.1|1069852_1070524_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	4.1e-64
WP_001830349.1|1070820_1071408_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830323.1|1071397_1072549_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
>prophage 2
NZ_CP043845	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2504425	1093975	1104409	2504425		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_002438897.1|1093975_1095481_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
WP_001832596.1|1095764_1096265_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_001829684.1|1096278_1097154_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001829589.1|1097908_1098307_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829582.1|1098269_1100375_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829597.1|1100493_1101462_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_002456931.1|1101436_1101700_+	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	100.0	5.5e-17
WP_002438902.1|1101715_1102690_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.7	5.9e-165
WP_002438903.1|1102673_1103633_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_001829596.1|1103629_1104409_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
>prophage 3
NZ_CP043845	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2504425	1286974	1291552	2504425	transposase	uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_001829295.1|1286974_1287238_+	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	41.4	1.5e-09
WP_107362610.1|1287348_1287444_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001829258.1|1287510_1287714_-|transposase	transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	80.0	3.3e-09
WP_107362609.1|1287805_1288210_+	glucose-6-phosphate dehydrogenase	NA	E3SKF6	Synechococcus_phage	31.3	1.9e-08
WP_071813278.1|1288244_1288310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077431490.1|1288316_1288466_+	hypothetical protein	NA	M4SJ15	Cyanophage	51.0	3.5e-08
WP_002469315.1|1288798_1289176_+	glucose-6-phosphate 1-dehydrogenase	NA	NA	NA	NA	NA
WP_002485410.1|1289294_1289537_+	UVRA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	48.6	7.9e-10
WP_002485412.1|1289539_1291552_+	ATP-binding cassette domain-containing protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	36.3	2.0e-106
>prophage 4
NZ_CP043845	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2504425	1344573	1353043	2504425		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831735.1|1344573_1345056_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
WP_001831674.1|1345042_1346170_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831723.1|1346170_1346875_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_001831728.1|1346874_1347135_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831727.1|1347136_1347808_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002467589.1|1347800_1349990_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_002485328.1|1349968_1351453_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	7.2e-45
WP_001831685.1|1351445_1352477_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_001831672.1|1352476_1353043_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
>prophage 5
NZ_CP043845	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2504425	2079323	2150729	2504425	integrase,transposase,protease	Staphylococcus_phage(70.59%)	75	2128536:2128553	2160329:2160346
WP_001830894.1|2079323_2079887_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830809.1|2080123_2080525_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830886.1|2081014_2081842_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001832688.1|2082084_2083086_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	69.4	1.3e-130
WP_002456446.1|2083342_2083804_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002456445.1|2083816_2084998_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	76.1	2.5e-178
WP_002467848.1|2085010_2085643_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.1e-87
WP_002495598.1|2085649_2086693_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_011082717.1|2087129_2088623_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_001830727.1|2088961_2089813_-	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002456441.1|2090190_2090406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010959195.1|2090438_2090558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830724.1|2090613_2091093_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	2.7e-25
WP_001830734.1|2091098_2091542_+	competence protein ComK	NA	NA	NA	NA	NA
WP_002485267.1|2091528_2091972_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	5.3e-20
WP_001830731.1|2092111_2092825_-	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_002446728.1|2093101_2093410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830726.1|2093448_2093814_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_001830729.1|2093810_2094164_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_104832450.1|2094642_2095821_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_001829826.1|2096050_2096206_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	1.2e-14
WP_104832450.1|2096586_2097765_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_001829832.1|2098049_2098886_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.0e-120
WP_002474706.1|2099066_2099975_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_001829830.1|2100077_2101277_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002485319.1|2101646_2103239_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.2	2.7e-268
WP_002489377.1|2103469_2104255_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.7e-99
WP_011082720.1|2104241_2104718_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.7	1.1e-44
WP_001829824.1|2104776_2105028_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.9	1.9e-35
WP_002485317.1|2105024_2106026_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.5	9.0e-92
WP_002485320.1|2106015_2107440_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.7	1.1e-172
WP_002485101.1|2108451_2108598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485100.1|2108692_2109358_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	37.6	2.7e-07
WP_002485103.1|2109729_2110062_+|integrase	integrase	integrase	A0A2H4JGN1	uncultured_Caudovirales_phage	65.4	6.5e-31
WP_002456425.1|2110097_2110253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002456424.1|2110334_2111069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485104.1|2111334_2111661_-	amidase	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	74.1	7.1e-38
WP_011082722.1|2111820_2112315_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	9.9e-68
WP_011082723.1|2112289_2112382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484853.1|2112627_2113188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505786.1|2113174_2114548_-	ATP-binding protein	NA	V9QJ85	Oenococcus_phage	31.9	1.5e-52
WP_002484614.1|2114848_2115763_+	DUF4238 domain-containing protein	NA	NA	NA	NA	NA
WP_002505510.1|2115957_2116785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484931.1|2116975_2119312_-	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002484406.1|2119377_2119590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484408.1|2119665_2120427_-	class A sortase	NA	NA	NA	NA	NA
WP_011082726.1|2120437_2120917_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002484399.1|2120885_2123042_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	38.1	2.3e-76
WP_002484400.1|2123083_2124388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484396.1|2124392_2124743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082727.1|2124739_2125060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082728.1|2125115_2125235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484407.1|2125265_2126123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484410.1|2126119_2126722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484401.1|2126742_2127813_-	CHAP domain-containing protein	NA	A0A249Y1A9	Staphylococcus_phage	58.0	2.0e-33
WP_002484404.1|2127816_2129766_-	ATP-binding protein	NA	NA	NA	NA	NA
2128536:2128553	attL	ATGTAGTTTTAAAAAATG	NA	NA	NA	NA
WP_011082729.1|2129791_2130388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484394.1|2130393_2130720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484393.1|2130766_2131168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484397.1|2131167_2133465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505512.1|2133461_2136041_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002484402.1|2136040_2136733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484415.1|2136733_2138980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484412.1|2139049_2139352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082730.1|2139468_2139738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505516.1|2139738_2142777_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_011082731.1|2142793_2144041_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_011082732.1|2144151_2145042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011082733.1|2145081_2145342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484694.1|2145346_2145772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484696.1|2145743_2146193_-	hypothetical protein	NA	A0A097PBE7	Streptococcus_pyogenes_phage	40.4	5.4e-12
WP_011082734.1|2146189_2146636_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002484687.1|2147913_2148450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484689.1|2148482_2148683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082735.1|2149649_2150729_+|integrase	site-specific integrase	integrase	A0A1J0MFS3	Staphylococcus_phage	42.1	1.6e-70
2160329:2160346	attR	ATGTAGTTTTAAAAAATG	NA	NA	NA	NA
