assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	1	954438-955259	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA|47aa|up_1|NZ_CP047571.1_953147_953288_-,NA	NA|434aa|up_9|NZ_CP047571.1_943844_945146_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP047571.1_945193_947428_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP047571.1_947505_947754_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP047571.1_947753_948089_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP047571.1_948159_948951_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP047571.1_949178_950816_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP047571.1_950903_952202_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP047571.1_952261_953134_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP047571.1_953147_953288_-	NA	NA|224aa|up_0|NZ_CP047571.1_953426_954098_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP047571.1_955897_957376_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP047571.1_957402_958680_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP047571.1_959775_960561_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP047571.1_960630_962085_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP047571.1_962106_963516_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP047571.1_963493_964273_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP047571.1_964269_965130_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP047571.1_965277_965853_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP047571.1_965869_966130_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP047571.1_966120_967392_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	2	982084-983149	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|571aa|up_9|NZ_CP047571.1_969949_971662_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP047571.1_971735_972470_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|383aa|up_7|NZ_CP047571.1_973607_974755_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas8e|503aa|up_6|NZ_CP047571.1_976408_977917_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP047571.1_977909_978392_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP047571.1_978404_979496_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP047571.1_979498_980173_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP047571.1_980159_980759_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP047571.1_980774_981692_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP047571.1_981693_981978_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP047571.1_983230_984268_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP047571.1_984519_985428_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP047571.1_985429_986857_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP047571.1_986856_987462_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP047571.1_987511_987835_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP047571.1_988028_988340_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP047571.1_988358_989069_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP047571.1_989068_989548_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP047571.1_989544_990594_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP047571.1_990574_991336_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	3	1482298-1482415	3	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|430aa|up_9|NZ_CP047571.1_1469628_1470918_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|268aa|up_8|NZ_CP047571.1_1470935_1471739_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|397aa|up_7|NZ_CP047571.1_1472873_1474064_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP047571.1_1474060_1475320_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP047571.1_1475309_1476938_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP047571.1_1477210_1478569_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP047571.1_1478573_1479650_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP047571.1_1480112_1480763_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP047571.1_1480816_1481071_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP047571.1_1481070_1482201_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP047571.1_1482434_1484720_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP047571.1_1485415_1489168_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP047571.1_1489295_1490018_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP047571.1_1490164_1492792_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP047571.1_1492940_1494629_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP047571.1_1494625_1495249_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP047571.1_1495392_1499787_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP047571.1_1499787_1501437_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP047571.1_1501441_1502218_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP047571.1_1502291_1503476_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	4	2101386-2101509	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA|30aa|down_7|NZ_CP047571.1_2110405_2110495_+	NA|471aa|up_9|NZ_CP047571.1_2090840_2092253_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP047571.1_2092809_2093019_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP047571.1_2093473_2094100_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP047571.1_2094120_2096223_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP047571.1_2096235_2096874_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP047571.1_2096937_2097606_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP047571.1_2097602_2098388_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP047571.1_2098391_2099204_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP047571.1_2099215_2100820_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP047571.1_2100945_2101251_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP047571.1_2101823_2103080_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP047571.1_2103120_2104494_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP047571.1_2104708_2105350_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP047571.1_2105389_2106538_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP047571.1_2106828_2108040_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP047571.1_2108152_2109085_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP047571.1_2109081_2110107_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP047571.1_2110405_2110495_+	NA	NA|390aa|down_8|NZ_CP047571.1_2110660_2111830_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP047571.1_2112064_2112646_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	5	2729548-2729639	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA|70aa|up_9|NZ_CP047571.1_2718622_2718832_-,NA	NA|70aa|up_9|NZ_CP047571.1_2718622_2718832_-	NA	NA|1321aa|up_8|NZ_CP047571.1_2718886_2722849_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP047571.1_2722888_2723527_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP047571.1_2723815_2724907_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP047571.1_2724906_2725599_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP047571.1_2725610_2725997_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP047571.1_2726004_2726805_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP047571.1_2726814_2727405_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP047571.1_2727415_2727910_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP047571.1_2727930_2729259_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP047571.1_2730062_2730659_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP047571.1_2730679_2730907_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP047571.1_2730944_2732186_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP047571.1_2732480_2733737_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP047571.1_2733996_2734917_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP047571.1_2734916_2735222_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP047571.1_2735373_2735973_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP047571.1_2735969_2738516_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP047571.1_2738515_2739688_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP047571.1_2739817_2740510_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	6	2873316-2873521	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|431aa|up_9|NZ_CP047571.1_2858395_2859688_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP047571.1_2859778_2861122_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP047571.1_2861132_2861744_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|NZ_CP047571.1_2861902_2865931_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP047571.1_2866065_2866560_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP047571.1_2867105_2868071_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP047571.1_2868193_2869960_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP047571.1_2869960_2871682_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP047571.1_2871723_2872428_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP047571.1_2872712_2872931_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP047571.1_2873731_2876008_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP047571.1_2876038_2876359_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP047571.1_2876681_2876906_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP047571.1_2876978_2878925_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP047571.1_2878921_2880037_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP047571.1_2880187_2881144_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP047571.1_2881140_2882799_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP047571.1_2883224_2883920_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP047571.1_2884414_2885314_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP047571.1_2885457_2887110_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	7	3274418-3274514	7	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|172aa|up_9|NZ_CP047571.1_3263812_3264328_-	PRK09934, PRK09934, fimbriae assembly protein	NA|347aa|up_8|NZ_CP047571.1_3264338_3265379_-	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH	NA|289aa|up_7|NZ_CP047571.1_3268138_3269005_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP047571.1_3269006_3269219_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP047571.1_3269326_3269848_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP047571.1_3269883_3271269_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP047571.1_3271442_3271937_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP047571.1_3271939_3272662_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP047571.1_3272779_3273289_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP047571.1_3273285_3274353_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP047571.1_3274547_3275441_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP047571.1_3275437_3276253_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP047571.1_3276263_3277523_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP047571.1_3277532_3279200_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP047571.1_3279516_3280566_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP047571.1_3280587_3281823_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP047571.1_3281833_3282619_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP047571.1_3282846_3283992_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP047571.1_3284013_3285315_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP047571.1_3285371_3286733_-	PRK08044, PRK08044, allantoinase AllB
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	8	3407971-3408115	8	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA|28aa|down_2|NZ_CP047571.1_3410160_3410244_-	NA|357aa|up_9|NZ_CP047571.1_3393109_3394180_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP047571.1_3394272_3394854_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP047571.1_3394858_3396676_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP047571.1_3396831_3398205_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP047571.1_3398280_3399600_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP047571.1_3400006_3401302_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP047571.1_3401359_3402049_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP047571.1_3402238_3403441_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP047571.1_3403437_3406584_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP047571.1_3406709_3407894_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP047571.1_3408138_3409047_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP047571.1_3409171_3410083_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP047571.1_3410160_3410244_-	NA	NA|95aa|down_3|NZ_CP047571.1_3410729_3411014_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP047571.1_3411085_3411763_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP047571.1_3412020_3412212_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP047571.1_3412261_3412786_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP047571.1_3412968_3413427_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP047571.1_3413546_3414356_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP047571.1_3414372_3415488_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	9	3792147-3792282	4	PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|126aa|up_9|NZ_CP047571.1_3782853_3783231_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP047571.1_3783237_3784080_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP047571.1_3784157_3784637_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP047571.1_3784828_3786691_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP047571.1_3786683_3787214_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP047571.1_3787321_3788653_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP047571.1_3788711_3788999_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP047571.1_3788995_3790282_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP047571.1_3790332_3791274_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP047571.1_3791288_3792059_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP047571.1_3792531_3794046_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP047571.1_3794076_3795219_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP047571.1_3795347_3796565_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP047571.1_3796638_3798192_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP047571.1_3798300_3799086_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP047571.1_3799091_3799682_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP047571.1_3799890_3800286_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP047571.1_3800547_3803769_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP047571.1_3803786_3804935_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP047571.1_3805390_3806212_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	10	3799720-3799861	9	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|96aa|up_9|NZ_CP047571.1_3788711_3788999_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP047571.1_3788995_3790282_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP047571.1_3790332_3791274_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP047571.1_3791288_3792059_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP047571.1_3792531_3794046_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP047571.1_3794076_3795219_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP047571.1_3795347_3796565_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP047571.1_3796638_3798192_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP047571.1_3798300_3799086_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP047571.1_3799091_3799682_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP047571.1_3799890_3800286_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP047571.1_3800547_3803769_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP047571.1_3803786_3804935_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP047571.1_3805390_3806212_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP047571.1_3806378_3807293_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP047571.1_3807358_3808309_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP047571.1_3808310_3808760_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP047571.1_3808867_3809362_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP047571.1_3809361_3812178_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP047571.1_3812220_3813162_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_009905115.1_ASM990511v1	NZ_CP047571	Escherichia coli strain 2EC1 chromosome, complete genome	11	3863800-3863941	10	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TGTAGGCATGATAAGACGCGTCAAGCGTCGCATCAGGCATT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA,NA	NA|323aa|up_9|NZ_CP047571.1_3853601_3854570_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|215aa|up_8|NZ_CP047571.1_3854675_3855320_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_7|NZ_CP047571.1_3855347_3856364_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|88aa|up_6|NZ_CP047571.1_3856395_3856659_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|240aa|up_5|NZ_CP047571.1_3856819_3857539_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|up_4|NZ_CP047571.1_3857618_3858842_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|up_3|NZ_CP047571.1_3858893_3860216_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|up_2|NZ_CP047571.1_3860342_3861122_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|517aa|up_1|NZ_CP047571.1_3861379_3862930_+	PRK10977, PRK10977, hypothetical protein; Provisional	NA|288aa|up_0|NZ_CP047571.1_3862901_3863765_+	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|261aa|down_0|NZ_CP047571.1_3863978_3864761_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_1|NZ_CP047571.1_3864757_3865831_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_2|NZ_CP047571.1_3865952_3866114_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|202aa|down_3|NZ_CP047571.1_3866240_3866846_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_4|NZ_CP047571.1_3867238_3868828_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_5|NZ_CP047571.1_3868918_3869596_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|down_6|NZ_CP047571.1_3869610_3870057_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|down_7|NZ_CP047571.1_3870025_3870439_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|down_8|NZ_CP047571.1_3870541_3871573_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_9|NZ_CP047571.1_3872233_3872470_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)
GCF_009905115.1_ASM990511v1	NZ_CP047573	Escherichia coli strain 2EC1 plasmid p2EC1-2, complete sequence	1	53576-53695	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,cas14j	NA|94aa|up_8|NZ_CP047573.1_46231_46513_+,NA|331aa|up_5|NZ_CP047573.1_47362_48355_-,NA|52aa|up_4|NZ_CP047573.1_48403_48559_-,NA|66aa|up_2|NZ_CP047573.1_49465_49663_-,NA|86aa|down_2|NZ_CP047573.1_55996_56254_+	NA|112aa|up_9|NZ_CP047573.1_45723_46059_-	smart00355, ZnF_C2H2, zinc finger	NA|94aa|up_8|NZ_CP047573.1_46231_46513_+	NA	NA|204aa|up_7|NZ_CP047573.1_46566_47178_+	pfam11140, DUF2913, Protein of unknown function (DUF2913)	NA|54aa|up_6|NZ_CP047573.1_47174_47336_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|331aa|up_5|NZ_CP047573.1_47362_48355_-	NA	NA|52aa|up_4|NZ_CP047573.1_48403_48559_-	NA	NA|235aa|up_3|NZ_CP047573.1_48699_49404_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|66aa|up_2|NZ_CP047573.1_49465_49663_-	NA	NA|214aa|up_1|NZ_CP047573.1_49667_50309_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|235aa|up_0|NZ_CP047573.1_52746_53451_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|84aa|down_0|NZ_CP047573.1_54556_54808_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP047573.1_54797_55079_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|86aa|down_2|NZ_CP047573.1_55996_56254_+	NA	NA|323aa|down_3|NZ_CP047573.1_56290_57259_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|235aa|down_4|NZ_CP047573.1_57575_58280_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|238aa|down_5|NZ_CP047573.1_58368_59082_+	pfam11843, DUF3363, Protein of unknown function (DUF3363)	NA|405aa|down_6|NZ_CP047573.1_59298_60513_+	TIGR00710, Bicyclomycin_resistance_protein_homolog, drug resistance transporter, Bcr/CflA subfamily	NA|102aa|down_7|NZ_CP047573.1_60540_60846_+	pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family	NA|391aa|down_8|NZ_CP047573.1_61112_62285_-	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|235aa|down_9|NZ_CP047573.1_62337_63042_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
