assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911775.1_ASM991177v1	NZ_CP047699	Bacillus megaterium strain 5-3 chromosome, complete genome	1	394185-394344	1	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,DEDDh,cas14j	Orphan	CAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGGTAGCGAAACAA	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,DEDDh,cas14j	NA|75aa|up_1|NZ_CP047699.1_392939_393164_-,NA|131aa|down_8|NZ_CP047699.1_403467_403860_+	NA|301aa|up_9|NZ_CP047699.1_386738_387641_-	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239	NA|270aa|up_8|NZ_CP047699.1_387737_388547_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|218aa|up_7|NZ_CP047699.1_388837_389491_-	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR	NA|105aa|up_6|NZ_CP047699.1_389573_389888_+	pfam08838, DUF1811, Protein of unknown function (DUF1811)	NA|52aa|up_5|NZ_CP047699.1_389966_390122_-	pfam08176, SspK, Small acid-soluble spore protein K family	NA|90aa|up_4|NZ_CP047699.1_390257_390527_+	pfam14043, WVELL, WVELL protein	NA|327aa|up_3|NZ_CP047699.1_390590_391571_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|365aa|up_2|NZ_CP047699.1_391810_392905_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|75aa|up_1|NZ_CP047699.1_392939_393164_-	NA	NA|250aa|up_0|NZ_CP047699.1_393280_394030_+	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL	NA|87aa|down_0|NZ_CP047699.1_394610_394871_+	pfam14182, YgaB, YgaB-like protein	NA|179aa|down_1|NZ_CP047699.1_395066_395603_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|584aa|down_2|NZ_CP047699.1_395772_397524_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|363aa|down_3|NZ_CP047699.1_397559_398648_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|433aa|down_4|NZ_CP047699.1_399281_400580_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|338aa|down_5|NZ_CP047699.1_400782_401796_+	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA	NA|264aa|down_6|NZ_CP047699.1_401788_402580_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|262aa|down_7|NZ_CP047699.1_402589_403375_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|131aa|down_8|NZ_CP047699.1_403467_403860_+	NA	NA|157aa|down_9|NZ_CP047699.1_403929_404400_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCF_009911775.1_ASM991177v1	NZ_CP047699	Bacillus megaterium strain 5-3 chromosome, complete genome	2	977203-977298	2	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,DEDDh,cas14j	Orphan	TGTAACTATAATGGTTACAACGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,DEDDh,cas14j	NA,NA|60aa|down_4|NZ_CP047699.1_980975_981155_+	NA|327aa|up_9|NZ_CP047699.1_964567_965548_+	cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|207aa|up_8|NZ_CP047699.1_965741_966362_+	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|299aa|up_7|NZ_CP047699.1_966877_967774_+	PRK12548, PRK12548, shikimate dehydrogenase	NA|435aa|up_6|NZ_CP047699.1_968415_969720_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|403aa|up_5|NZ_CP047699.1_969831_971040_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|319aa|up_4|NZ_CP047699.1_971039_971996_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|483aa|up_3|NZ_CP047699.1_972147_973596_+	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1	NA|292aa|up_2|NZ_CP047699.1_973683_974559_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|443aa|up_1|NZ_CP047699.1_975322_976651_+	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|66aa|up_0|NZ_CP047699.1_976698_976896_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|211aa|down_0|NZ_CP047699.1_977319_977952_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|329aa|down_1|NZ_CP047699.1_978124_979111_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|181aa|down_2|NZ_CP047699.1_979723_980266_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|148aa|down_3|NZ_CP047699.1_980383_980827_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|60aa|down_4|NZ_CP047699.1_980975_981155_+	NA	NA|204aa|down_5|NZ_CP047699.1_981353_981965_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|49aa|down_6|NZ_CP047699.1_981957_982104_+	pfam12841, YvrJ, YvrJ protein family	NA|76aa|down_7|NZ_CP047699.1_982108_982336_+	PRK14082, PRK14082, hypothetical protein; Provisional	NA|58aa|down_8|NZ_CP047699.1_984269_984443_-	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|105aa|down_9|NZ_CP047699.1_984516_984831_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
GCF_009911775.1_ASM991177v1	NZ_CP047699	Bacillus megaterium strain 5-3 chromosome, complete genome	3	1078657-1078737	3	CRISPRCasFinder	no	csa3	cas3,DinG,csa3,WYL,DEDDh,cas14j	Type I-A	ATAATGAATGATAGTCATTCATT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,DEDDh,cas14j	NA|73aa|up_6|NZ_CP047699.1_1070362_1070581_+,NA|87aa|up_5|NZ_CP047699.1_1070577_1070838_+,NA|93aa|up_1|NZ_CP047699.1_1075367_1075646_-,NA	csa3|88aa|up_9|NZ_CP047699.1_1068010_1068274_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|213aa|up_8|NZ_CP047699.1_1068274_1068913_+	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	NA|331aa|up_7|NZ_CP047699.1_1069061_1070054_-	pfam11553, DUF3231, Protein of unknown function (DUF3231)	NA|73aa|up_6|NZ_CP047699.1_1070362_1070581_+	NA	NA|87aa|up_5|NZ_CP047699.1_1070577_1070838_+	NA	NA|844aa|up_4|NZ_CP047699.1_1071119_1073651_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|215aa|up_3|NZ_CP047699.1_1073708_1074353_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|310aa|up_2|NZ_CP047699.1_1074401_1075331_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|93aa|up_1|NZ_CP047699.1_1075367_1075646_-	NA	NA|815aa|up_0|NZ_CP047699.1_1075852_1078297_+	cd01948, EAL, EAL domain	NA|460aa|down_0|NZ_CP047699.1_1078804_1080184_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|291aa|down_1|NZ_CP047699.1_1080236_1081109_+	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|374aa|down_2|NZ_CP047699.1_1081147_1082269_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|243aa|down_3|NZ_CP047699.1_1082835_1083564_-	PRK12804, PRK12804, flagellin; Provisional	NA|214aa|down_4|NZ_CP047699.1_1083793_1084435_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|322aa|down_5|NZ_CP047699.1_1084449_1085415_-	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|235aa|down_6|NZ_CP047699.1_1085415_1086120_-	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|304aa|down_7|NZ_CP047699.1_1086496_1087408_+	pfam12773, DZR, Double zinc ribbon	NA|490aa|down_8|NZ_CP047699.1_1087472_1088942_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|186aa|down_9|NZ_CP047699.1_1089049_1089607_-	pfam04982, HPP, HPP family
GCF_009911775.1_ASM991177v1	NZ_CP047699	Bacillus megaterium strain 5-3 chromosome, complete genome	4	1211649-1211858	1	CRT	no		cas3,DinG,csa3,WYL,DEDDh,cas14j	Orphan	AGAACGGCGAGTAGAACGACGAGTAGAACG	30	2	4	1211679-1211708|1211739-1211756|1211739-1211756|1211739-1211756	NZ_CP047699.1_1414324-1414353|NZ_CP047699.1_1414195-1414212|NZ_CP047699.1_1414270-1414287|NZ_CP047699.1_1414336-1414353	NA	3	3	Orphan	cas3,DinG,csa3,WYL,DEDDh,cas14j	NA|81aa|up_5|NZ_CP047699.1_1205861_1206104_+,NA|81aa|up_2|NZ_CP047699.1_1208248_1208491_+,NA|108aa|down_1|NZ_CP047699.1_1212444_1212768_-,NA|65aa|down_3|NZ_CP047699.1_1214135_1214330_+	NA|112aa|up_9|NZ_CP047699.1_1202909_1203245_-	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|113aa|up_8|NZ_CP047699.1_1203637_1203976_-	pfam12788, YmaF, YmaF family	NA|138aa|up_7|NZ_CP047699.1_1204229_1204643_+	pfam07485, DUF1529, Domain of Unknown Function (DUF1259)	NA|251aa|up_6|NZ_CP047699.1_1204855_1205608_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|81aa|up_5|NZ_CP047699.1_1205861_1206104_+	NA	NA|169aa|up_4|NZ_CP047699.1_1206307_1206814_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|385aa|up_3|NZ_CP047699.1_1206861_1208016_+	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	NA|81aa|up_2|NZ_CP047699.1_1208248_1208491_+	NA	NA|538aa|up_1|NZ_CP047699.1_1208960_1210574_+	cd05654, M20_ArgE_RocB, M20 Peptidase arginine utilization protein, RocB	NA|266aa|up_0|NZ_CP047699.1_1210592_1211390_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|149aa|down_0|NZ_CP047699.1_1212070_1212517_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|108aa|down_1|NZ_CP047699.1_1212444_1212768_-	NA	NA|390aa|down_2|NZ_CP047699.1_1212791_1213961_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|65aa|down_3|NZ_CP047699.1_1214135_1214330_+	NA	NA|434aa|down_4|NZ_CP047699.1_1214361_1215663_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|317aa|down_5|NZ_CP047699.1_1215882_1216833_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_6|NZ_CP047699.1_1216850_1217549_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|246aa|down_7|NZ_CP047699.1_1217724_1218462_+	cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter	NA|389aa|down_8|NZ_CP047699.1_1218463_1219630_+	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|146aa|down_9|NZ_CP047699.1_1219957_1220395_+	pfam01636, APH, Phosphotransferase enzyme family
GCF_009911775.1_ASM991177v1	NZ_CP047699	Bacillus megaterium strain 5-3 chromosome, complete genome	5	1577408-1577490	4	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,DEDDh,cas14j	Orphan	TGATTTTTGGAAGTAGCTTCTCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,DEDDh,cas14j	NA|79aa|up_6|NZ_CP047699.1_1571232_1571469_-,NA|49aa|up_1|NZ_CP047699.1_1576467_1576614_+,NA|139aa|up_0|NZ_CP047699.1_1576845_1577262_+,NA|75aa|down_0|NZ_CP047699.1_1577767_1577992_+,NA|74aa|down_3|NZ_CP047699.1_1580824_1581046_+,NA|67aa|down_4|NZ_CP047699.1_1581202_1581403_+	NA|97aa|up_9|NZ_CP047699.1_1567868_1568159_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|480aa|up_8|NZ_CP047699.1_1568654_1570094_+	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like	NA|283aa|up_7|NZ_CP047699.1_1570246_1571095_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|79aa|up_6|NZ_CP047699.1_1571232_1571469_-	NA	NA|209aa|up_5|NZ_CP047699.1_1571635_1572262_+	pfam01810, LysE, LysE type translocator	NA|448aa|up_4|NZ_CP047699.1_1572389_1573733_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|51aa|up_3|NZ_CP047699.1_1573988_1574141_-	pfam14139, YpzG, YpzG-like protein	NA|558aa|up_2|NZ_CP047699.1_1574366_1576040_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|49aa|up_1|NZ_CP047699.1_1576467_1576614_+	NA	NA|139aa|up_0|NZ_CP047699.1_1576845_1577262_+	NA	NA|75aa|down_0|NZ_CP047699.1_1577767_1577992_+	NA	NA|244aa|down_1|NZ_CP047699.1_1578088_1578820_-	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|462aa|down_2|NZ_CP047699.1_1579282_1580668_+	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|74aa|down_3|NZ_CP047699.1_1580824_1581046_+	NA	NA|67aa|down_4|NZ_CP047699.1_1581202_1581403_+	NA	NA|70aa|down_5|NZ_CP047699.1_1581492_1581702_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|328aa|down_6|NZ_CP047699.1_1581792_1582776_-	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|414aa|down_7|NZ_CP047699.1_1583102_1584344_+	PRK09528, lacY, galactoside permease; Reviewed	NA|489aa|down_8|NZ_CP047699.1_1584356_1585823_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|487aa|down_9|NZ_CP047699.1_1586095_1587556_+	PRK00029, PRK00029, YdiU family protein
