assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	1	404426-404510	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	1	404452-404484	NZ_CP047817.1_677321-677289	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047817.1_395055_395625_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047817.1_395614_396199_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047817.1_396199_396553_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047817.1_396555_397272_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047817.1_397311_397998_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047817.1_398089_398551_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047817.1_398609_400757_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047817.1_400813_401788_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047817.1_401832_402084_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047817.1_402429_404253_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047817.1_404818_405943_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047817.1_406043_407021_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047817.1_407052_407679_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047817.1_407747_409580_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047817.1_409715_410855_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047817.1_410858_411797_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047817.1_411798_412551_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047817.1_412557_413904_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047817.1_414196_414373_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047817.1_414615_415299_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	2	1167648-1167729	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1167672-1167705	NZ_CP047817.1_677322-677289	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|52aa|up_9|NZ_CP047817.1_1159361_1159517_-,NA|38aa|down_1|NZ_CP047817.1_1168712_1168826_-	NA|52aa|up_9|NZ_CP047817.1_1159361_1159517_-	NA	NA|91aa|up_8|NZ_CP047817.1_1159528_1159801_-	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain	NA|74aa|up_7|NZ_CP047817.1_1159801_1160023_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|191aa|up_6|NZ_CP047817.1_1160194_1160767_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|463aa|up_5|NZ_CP047817.1_1160793_1162182_+	pfam02037, SAP, SAP domain	NA|274aa|up_4|NZ_CP047817.1_1163558_1164380_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047817.1_1164397_1165093_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047817.1_1165085_1166111_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047817.1_1166360_1166657_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047817.1_1166649_1167036_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047817.1_1167832_1168711_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047817.1_1168712_1168826_-	NA	NA|127aa|down_2|NZ_CP047817.1_1168889_1169270_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047817.1_1169427_1169784_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047817.1_1169927_1170248_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047817.1_1170398_1170938_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047817.1_1171020_1171737_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047817.1_1171884_1172307_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047817.1_1172705_1173200_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047817.1_1173354_1173972_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	3	1216257-1216335	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1216281-1216311|1216281-1216311|1216281-1216311	NZ_CP047817.1_1727969-1727939|NZ_CP047817.1_369998-370028|NZ_CP047817.1_1728024-1727994	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047817.1_1223813_1223921_-,NA|35aa|down_7|NZ_CP047817.1_1225353_1225458_-	NA|301aa|up_9|NZ_CP047817.1_1205198_1206101_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047817.1_1206343_1206931_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047817.1_1207494_1208439_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047817.1_1208549_1209545_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047817.1_1209541_1210453_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047817.1_1211278_1212214_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047817.1_1212280_1213720_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047817.1_1213727_1214213_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047817.1_1214220_1215060_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047817.1_1215065_1215998_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047817.1_1216661_1219508_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047817.1_1219515_1221501_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047817.1_1221769_1222006_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047817.1_1222002_1222653_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047817.1_1222826_1223666_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047817.1_1223813_1223921_-	NA	NA|370aa|down_6|NZ_CP047817.1_1224074_1225185_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047817.1_1225353_1225458_-	NA	NA|440aa|down_8|NZ_CP047817.1_1225611_1226931_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|844aa|down_9|NZ_CP047817.1_1227019_1229551_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	4	1612794-1612896	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047817.1_1604412_1604949_+,NA|221aa|up_1|NZ_CP047817.1_1611040_1611703_+,NA|33aa|down_0|NZ_CP047817.1_1613571_1613670_-,NA|128aa|down_6|NZ_CP047817.1_1619917_1620301_+,NA|70aa|down_8|NZ_CP047817.1_1621125_1621335_+	NA|91aa|up_9|NZ_CP047817.1_1602645_1602918_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047817.1_1603316_1604021_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047817.1_1604412_1604949_+	NA	NA|514aa|up_6|NZ_CP047817.1_1605061_1606603_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047817.1_1606627_1608094_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047817.1_1608131_1609400_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047817.1_1609399_1609978_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047817.1_1610490_1610898_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047817.1_1611040_1611703_+	NA	NA|319aa|up_0|NZ_CP047817.1_1611820_1612777_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|33aa|down_0|NZ_CP047817.1_1613571_1613670_-	NA	NA|463aa|down_1|NZ_CP047817.1_1613754_1615143_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047817.1_1615222_1615978_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047817.1_1616469_1617039_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047817.1_1617054_1618578_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047817.1_1619021_1619648_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047817.1_1619917_1620301_+	NA	NA|194aa|down_7|NZ_CP047817.1_1620366_1620948_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047817.1_1621125_1621335_+	NA	NA|84aa|down_9|NZ_CP047817.1_1621373_1621625_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	5	2227263-2227396	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2227280-2227325|2227343-2227379	NZ_CP047817.1_2223630-2223675|NZ_CP047817.1_2223693-2223729	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047817.1_2220806_2221007_+,NA|78aa|down_5|NZ_CP047817.1_2235329_2235563_+,NA|103aa|down_6|NZ_CP047817.1_2235670_2235979_-,NA|89aa|down_7|NZ_CP047817.1_2236122_2236389_-	NA|204aa|up_9|NZ_CP047817.1_2209643_2210255_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047817.1_2210801_2212079_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047817.1_2212555_2214379_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047817.1_2214517_2214934_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047817.1_2215164_2215857_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|227aa|up_4|NZ_CP047817.1_2216940_2217621_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047817.1_2217644_2219198_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047817.1_2219314_2220673_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047817.1_2220806_2221007_+	NA	NA|1039aa|up_0|NZ_CP047817.1_2221141_2224258_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047817.1_2228004_2228871_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047817.1_2229081_2229825_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047817.1_2230148_2230505_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|988aa|down_3|NZ_CP047817.1_2230809_2233773_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP047817.1_2234156_2235233_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP047817.1_2235329_2235563_+	NA	NA|103aa|down_6|NZ_CP047817.1_2235670_2235979_-	NA	NA|89aa|down_7|NZ_CP047817.1_2236122_2236389_-	NA	NA|603aa|down_8|NZ_CP047817.1_2236672_2238481_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP047817.1_2238612_2239005_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	6	2302426-2302504	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	2302449-2302481|2302449-2302481|2302449-2302481|2302449-2302481	NZ_CP047817.1_1167359-1167391|NZ_CP047817.1_1203562-1203594|NZ_CP047817.1_2694120-2694088|NZ_CP047817.1_1203618-1203650	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047817.1_2299350_2300010_-,NA|36aa|up_0|NZ_CP047817.1_2301999_2302107_+,NA	NA|693aa|up_9|NZ_CP047817.1_2291812_2293891_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047817.1_2294028_2295438_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047817.1_2295723_2296530_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047817.1_2296592_2297249_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047817.1_2297361_2297835_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047817.1_2297957_2299169_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047817.1_2299350_2300010_-	NA	NA|381aa|up_2|NZ_CP047817.1_2300069_2301212_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047817.1_2301479_2301866_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047817.1_2301999_2302107_+	NA	NA|588aa|down_0|NZ_CP047817.1_2302809_2304573_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047817.1_2304597_2306331_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047817.1_2306783_2307470_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047817.1_2307447_2308806_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047817.1_2308807_2309815_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047817.1_2309792_2310908_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047817.1_2310918_2311611_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047817.1_2311621_2312089_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047817.1_2312140_2313118_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047817.1_2313119_2314067_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	7	2467230-2467310	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	13	2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285|2467255-2467285	NZ_CP047817.1_1203622-1203652|NZ_CP047817.1_389846-389816|NZ_CP047817.1_677363-677333|NZ_CP047817.1_883459-883429|NZ_CP047817.1_1384214-1384184|NZ_CP047817.1_1651634-1651604|NZ_CP047817.1_80554-80584|NZ_CP047817.1_588970-589000|NZ_CP047817.1_986020-986050|NZ_CP047817.1_1167363-1167393|NZ_CP047817.1_1203566-1203596|NZ_CP047817.1_1949552-1949582|NZ_CP047817.1_2478056-2478086	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047817.1_2467351_2467537_-,NA|84aa|down_5|NZ_CP047817.1_2470676_2470928_-,NA|106aa|down_8|NZ_CP047817.1_2476049_2476367_-,NA|55aa|down_9|NZ_CP047817.1_2476611_2476776_-	NA|202aa|up_9|NZ_CP047817.1_2460122_2460728_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047817.1_2460897_2461902_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047817.1_2461932_2462439_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047817.1_2462440_2462935_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047817.1_2462997_2464257_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047817.1_2464253_2464739_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047817.1_2464752_2465199_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047817.1_2465204_2465438_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047817.1_2465444_2466044_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047817.1_2466063_2467086_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047817.1_2467351_2467537_-	NA	NA|117aa|down_1|NZ_CP047817.1_2467662_2468013_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047817.1_2468114_2469326_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047817.1_2469318_2469759_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047817.1_2469920_2470685_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047817.1_2470676_2470928_-	NA	NA|422aa|down_6|NZ_CP047817.1_2471316_2472582_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047817.1_2472698_2475866_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047817.1_2476049_2476367_-	NA	NA|55aa|down_9|NZ_CP047817.1_2476611_2476776_-	NA
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	8	2575269-2575354	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047817.1_2586316_2586475_-,NA|35aa|down_8|NZ_CP047817.1_2587154_2587259_+,NA|364aa|down_9|NZ_CP047817.1_2587691_2588783_-	NA|396aa|up_9|NZ_CP047817.1_2550512_2551700_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP047817.1_2551718_2552402_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP047817.1_2552578_2553922_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP047817.1_2554020_2554494_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP047817.1_2554816_2556259_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP047817.1_2556406_2557471_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP047817.1_2563711_2564620_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047817.1_2564808_2565618_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047817.1_2565619_2566552_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047817.1_2566578_2567934_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047817.1_2575976_2577083_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047817.1_2577082_2577517_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047817.1_2577528_2579661_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047817.1_2579695_2581234_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047817.1_2581914_2583720_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047817.1_2583951_2584734_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047817.1_2584801_2585659_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047817.1_2586316_2586475_-	NA	NA|35aa|down_8|NZ_CP047817.1_2587154_2587259_+	NA	NA|364aa|down_9|NZ_CP047817.1_2587691_2588783_-	NA
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	9	2587594-2587675	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047817.1_2586316_2586475_-,NA|35aa|up_0|NZ_CP047817.1_2587154_2587259_+,NA|364aa|down_0|NZ_CP047817.1_2587691_2588783_-,NA|77aa|down_5|NZ_CP047817.1_2592569_2592800_+	NA|452aa|up_9|NZ_CP047817.1_2566578_2567934_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP047817.1_2575976_2577083_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047817.1_2577082_2577517_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047817.1_2577528_2579661_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047817.1_2579695_2581234_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047817.1_2581914_2583720_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047817.1_2583951_2584734_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047817.1_2584801_2585659_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047817.1_2586316_2586475_-	NA	NA|35aa|up_0|NZ_CP047817.1_2587154_2587259_+	NA	NA|364aa|down_0|NZ_CP047817.1_2587691_2588783_-	NA	NA|326aa|down_1|NZ_CP047817.1_2589048_2590026_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047817.1_2590027_2590348_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047817.1_2590499_2591165_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047817.1_2591600_2592539_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047817.1_2592569_2592800_+	NA	NA|458aa|down_6|NZ_CP047817.1_2593471_2594845_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047817.1_2595301_2595715_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047817.1_2595914_2596358_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047817.1_2596478_2597189_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009911855.1_ASM991185v1	NZ_CP047817	Staphylococcus aureus strain UP_1433 chromosome, complete genome	10	2718065-2718217	2,9	PILER-CR,CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AATGCAAGTTGGGGTGGGGGCCCCAACACAGAGAAATTGGATTCCCAATTTC,ACAATGCAAGTTGGGGTGGGGGCC	52,24	2	15	2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718176-2718198|2718130-2718163|2718130-2718163|2718130-2718163|2718130-2718163|2718130-2718163	NZ_CP047817.1_284474-284452|NZ_CP047817.1_889047-889025|NZ_CP047817.1_1216316-1216338|NZ_CP047817.1_2027247-2027269|NZ_CP047817.1_227233-227211|NZ_CP047817.1_986081-986103|NZ_CP047817.1_1101564-1101542|NZ_CP047817.1_69865-69887|NZ_CP047817.1_883398-883376|NZ_CP047817.1_2467314-2467336|NZ_CP047817.1_889060-889027|NZ_CP047817.1_1216303-1216336|NZ_CP047817.1_284487-284454|NZ_CP047817.1_672915-672948|NZ_CP047817.1_2027234-2027267	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|81aa|down_4|NZ_CP047817.1_2724378_2724621_-,NA|61aa|down_6|NZ_CP047817.1_2725714_2725897_-,NA|114aa|down_7|NZ_CP047817.1_2726100_2726442_-	NA|48aa|up_9|NZ_CP047817.1_2708290_2708434_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP047817.1_2708436_2709000_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP047817.1_2709235_2709370_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP047817.1_2709969_2710755_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP047817.1_2711115_2711742_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP047817.1_2711938_2713198_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP047817.1_2713222_2713966_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP047817.1_2714140_2714425_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP047817.1_2714500_2716117_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP047817.1_2716656_2717964_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|408aa|down_0|NZ_CP047817.1_2718407_2719631_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP047817.1_2720066_2721122_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP047817.1_2721143_2722160_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP047817.1_2723278_2724316_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_4|NZ_CP047817.1_2724378_2724621_-	NA	NA|328aa|down_5|NZ_CP047817.1_2724631_2725615_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_6|NZ_CP047817.1_2725714_2725897_-	NA	NA|114aa|down_7|NZ_CP047817.1_2726100_2726442_-	NA	DEDDh|311aa|down_8|NZ_CP047817.1_2726447_2727380_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|238aa|down_9|NZ_CP047817.1_2727395_2728109_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
