assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	1	904067-904152	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	3	904097-904122|904097-904122|904097-904122	NZ_CP047789.1_1294764-1294789|NZ_CP047789.1_1294708-1294733|NZ_CP047789.1_1294820-1294845	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|76aa|up_6|NZ_CP047789.1_896864_897092_-,NA|75aa|down_0|NZ_CP047789.1_904391_904616_-,NA|49aa|down_1|NZ_CP047789.1_904572_904719_-,NA|78aa|down_3|NZ_CP047789.1_906827_907061_+,NA|62aa|down_4|NZ_CP047789.1_907682_907868_+,NA|169aa|down_7|NZ_CP047789.1_909780_910287_-,NA|31aa|down_9|NZ_CP047789.1_911319_911412_+	NA|45aa|up_9|NZ_CP047789.1_894129_894264_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP047789.1_895175_895364_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP047789.1_895612_896560_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP047789.1_896864_897092_-	NA	NA|502aa|up_5|NZ_CP047789.1_897399_898905_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP047789.1_899127_900060_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP047789.1_900082_901084_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP047789.1_901521_902247_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP047789.1_902341_903067_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP047789.1_903174_903891_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047789.1_904391_904616_-	NA	NA|49aa|down_1|NZ_CP047789.1_904572_904719_-	NA	NA|320aa|down_2|NZ_CP047789.1_905391_906351_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047789.1_906827_907061_+	NA	NA|62aa|down_4|NZ_CP047789.1_907682_907868_+	NA	NA|117aa|down_5|NZ_CP047789.1_908520_908871_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047789.1_909024_909522_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047789.1_909780_910287_-	NA	NA|134aa|down_8|NZ_CP047789.1_910958_911360_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_9|NZ_CP047789.1_911319_911412_+	NA
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	2	1214525-1214606	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1214549-1214582|1214549-1214582	NZ_CP047789.1_593389-593422|NZ_CP047789.1_682607-682574	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_1|NZ_CP047789.1_1215589_1215703_-	NA|414aa|up_9|NZ_CP047789.1_1205008_1206250_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047789.1_1206364_1207672_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047789.1_1207769_1208531_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047789.1_1208858_1209710_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047789.1_1209942_1210137_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047789.1_1210490_1211312_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047789.1_1211329_1212025_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047789.1_1212017_1213043_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047789.1_1213292_1213589_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047789.1_1213581_1213968_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047789.1_1214709_1215588_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047789.1_1215589_1215703_-	NA	NA|127aa|down_2|NZ_CP047789.1_1215766_1216147_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047789.1_1216304_1216661_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047789.1_1216804_1217125_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047789.1_1217274_1217814_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047789.1_1217896_1218613_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047789.1_1218760_1219183_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047789.1_1219581_1220076_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047789.1_1220230_1220848_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	3	1250482-1250574	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|153aa|up_6|NZ_CP047789.1_1242011_1242470_-,NA	NA|791aa|up_9|NZ_CP047789.1_1238449_1240822_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP047789.1_1240855_1241596_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP047789.1_1241711_1241945_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP047789.1_1242011_1242470_-	NA	NA|435aa|up_5|NZ_CP047789.1_1242809_1244114_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP047789.1_1244243_1245761_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP047789.1_1245763_1246525_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP047789.1_1246646_1247837_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP047789.1_1247975_1248986_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP047789.1_1249038_1250052_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP047789.1_1250811_1251441_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP047789.1_1252143_1253046_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP047789.1_1253288_1253876_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP047789.1_1254449_1255394_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP047789.1_1255503_1256499_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP047789.1_1256495_1257407_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP047789.1_1258228_1259164_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP047789.1_1259230_1260670_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP047789.1_1260677_1261163_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP047789.1_1261170_1262010_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	4	1257643-1257867	1,4	PILER-CR,CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	GGGGCCCCAACACAGA,AAAGTCAGCTTACAATAATGTGCAAGTTGG	16,30	3	13	1257659-1257700|1257659-1257700|1257659-1257700|1257659-1257700|1257659-1257700|1257659-1257700|1257659-1257700|1257773-1257812|1257773-1257812|1257773-1257812|1257812-1257837|1257812-1257837|1257812-1257837	NZ_CP047789.1_682706-682665|NZ_CP047789.1_593290-593331|NZ_CP047789.1_978493-978534|NZ_CP047789.1_2332630-2332589|NZ_CP047789.1_77556-77597|NZ_CP047789.1_414050-414091|NZ_CP047789.1_1250450-1250491|NZ_CP047789.1_904161-904122|NZ_CP047789.1_79013-79052|NZ_CP047789.1_908129-908090|NZ_CP047789.1_1294845-1294820|NZ_CP047789.1_1122110-1122085|NZ_CP047789.1_1294789-1294764	NA:NA	3,1	3	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|254aa|up_9|NZ_CP047789.1_1245763_1246525_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP047789.1_1246646_1247837_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP047789.1_1247975_1248986_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP047789.1_1249038_1250052_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP047789.1_1250811_1251441_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP047789.1_1252143_1253046_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP047789.1_1253288_1253876_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP047789.1_1254449_1255394_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP047789.1_1255503_1256499_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP047789.1_1256495_1257407_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP047789.1_1258228_1259164_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP047789.1_1259230_1260670_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP047789.1_1260677_1261163_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP047789.1_1261170_1262010_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP047789.1_1262015_1262948_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP047789.1_1263554_1266401_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP047789.1_1266408_1268394_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP047789.1_1268662_1268899_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP047789.1_1268895_1269546_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP047789.1_1269719_1270559_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	5	1263185-1263265	5	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	9	1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239|1263211-1263239	NZ_CP047789.1_235561-235533|NZ_CP047789.1_1702894-1702866|NZ_CP047789.1_1702949-1702921|NZ_CP047789.1_904214-904186|NZ_CP047789.1_2332627-2332599|NZ_CP047789.1_68151-68179|NZ_CP047789.1_414053-414081|NZ_CP047789.1_1102443-1102471|NZ_CP047789.1_1214512-1214540	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|36aa|down_5|NZ_CP047789.1_1270706_1270814_-,NA|35aa|down_7|NZ_CP047789.1_1272246_1272351_-	NA|301aa|up_9|NZ_CP047789.1_1252143_1253046_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047789.1_1253288_1253876_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047789.1_1254449_1255394_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047789.1_1255503_1256499_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047789.1_1256495_1257407_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047789.1_1258228_1259164_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047789.1_1259230_1260670_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047789.1_1260677_1261163_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047789.1_1261170_1262010_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047789.1_1262015_1262948_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047789.1_1263554_1266401_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047789.1_1266408_1268394_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047789.1_1268662_1268899_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047789.1_1268895_1269546_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047789.1_1269719_1270559_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047789.1_1270706_1270814_-	NA	NA|370aa|down_6|NZ_CP047789.1_1270967_1272078_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047789.1_1272246_1272351_-	NA	NA|844aa|down_8|NZ_CP047789.1_1272392_1274924_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047789.1_1275337_1275910_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	6	1420178-1420270	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP047789.1_1415045_1415762_-,NA|169aa|up_4|NZ_CP047789.1_1415923_1416430_-,NA|36aa|down_3|NZ_CP047789.1_1423678_1423786_-	NA|75aa|up_9|NZ_CP047789.1_1411168_1411393_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047789.1_1411587_1412517_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047789.1_1413464_1413839_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047789.1_1414089_1414878_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047789.1_1415045_1415762_-	NA	NA|169aa|up_4|NZ_CP047789.1_1415923_1416430_-	NA	NA|267aa|up_3|NZ_CP047789.1_1416565_1417366_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047789.1_1417349_1418069_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047789.1_1418123_1419074_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047789.1_1419221_1420049_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047789.1_1420487_1421123_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047789.1_1421511_1423173_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047789.1_1423169_1423553_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP047789.1_1423678_1423786_-	NA	NA|337aa|down_4|NZ_CP047789.1_1423860_1424871_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP047789.1_1425369_1425891_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP047789.1_1425918_1427214_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP047789.1_1427253_1427730_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP047789.1_1427898_1428435_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP047789.1_1428645_1429584_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	7	2083139-2083312	2,7	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACAAAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	29	2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083192-2083210|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279|2083264-2083279	NZ_CP047789.1_235568-235550|NZ_CP047789.1_1702901-1702883|NZ_CP047789.1_1702956-1702938|NZ_CP047789.1_414046-414064|NZ_CP047789.1_978489-978507|NZ_CP047789.1_904221-904203|NZ_CP047789.1_1516466-1516448|NZ_CP047789.1_1645290-1645272|NZ_CP047789.1_2405709-2405691|NZ_CP047789.1_68144-68162|NZ_CP047789.1_380080-380098|NZ_CP047789.1_1250446-1250464|NZ_CP047789.1_68103-68118|NZ_CP047789.1_78967-78982|NZ_CP047789.1_593361-593376|NZ_CP047789.1_678223-678238|NZ_CP047789.1_682635-682620|NZ_CP047789.1_1004760-1004775|NZ_CP047789.1_1214252-1214267|NZ_CP047789.1_1703053-1703038|NZ_CP047789.1_2248569-2248584|NZ_CP047789.1_79026-79041|NZ_CP047789.1_235437-235422|NZ_CP047789.1_414005-414020|NZ_CP047789.1_636574-636589|NZ_CP047789.1_908116-908101|NZ_CP047789.1_1121966-1121951|NZ_CP047789.1_1122080-1122065|NZ_CP047789.1_2434788-2434803	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP047789.1_2080098_2080278_+,NA	NA|205aa|up_9|NZ_CP047789.1_2073816_2074431_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP047789.1_2074423_2075674_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP047789.1_2075689_2076703_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP047789.1_2076671_2077250_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP047789.1_2077246_2077825_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP047789.1_2077817_2078522_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP047789.1_2078518_2079277_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP047789.1_2079273_2079906_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP047789.1_2080098_2080278_+	NA	NA|681aa|up_0|NZ_CP047789.1_2080998_2083041_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP047789.1_2083487_2084540_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP047789.1_2084526_2085399_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP047789.1_2085395_2085701_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP047789.1_2085664_2086903_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP047789.1_2087066_2087627_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP047789.1_2088475_2089138_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP047789.1_2089154_2089847_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP047789.1_2089843_2090611_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP047789.1_2090845_2091346_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP047789.1_2091348_2091825_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	8	2524026-2524219	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	2524049-2524081|2524049-2524081|2524049-2524081|2524049-2524081|2524105-2524140|2524105-2524140|2524105-2524140|2524105-2524140|2524164-2524196|2524164-2524196|2524164-2524196|2524164-2524196|2524164-2524196	NZ_CP047789.1_682652-682620|NZ_CP047789.1_904165-904133|NZ_CP047789.1_78950-78982|NZ_CP047789.1_2248552-2248584|NZ_CP047789.1_904221-904186|NZ_CP047789.1_235568-235533|NZ_CP047789.1_68144-68179|NZ_CP047789.1_414046-414081|NZ_CP047789.1_682652-682620|NZ_CP047789.1_904165-904133|NZ_CP047789.1_78950-78982|NZ_CP047789.1_593344-593376|NZ_CP047789.1_2248552-2248584	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047789.1_2524278_2524449_-,NA|84aa|down_5|NZ_CP047789.1_2527588_2527840_-,NA|106aa|down_8|NZ_CP047789.1_2532964_2533282_-,NA|55aa|down_9|NZ_CP047789.1_2533526_2533691_-	NA|202aa|up_9|NZ_CP047789.1_2516920_2517526_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047789.1_2517695_2518700_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047789.1_2518730_2519237_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047789.1_2519238_2519733_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047789.1_2519795_2521055_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047789.1_2521051_2521537_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047789.1_2521550_2521997_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047789.1_2522002_2522236_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047789.1_2522242_2522842_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047789.1_2522861_2523884_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047789.1_2524278_2524449_-	NA	NA|117aa|down_1|NZ_CP047789.1_2524574_2524925_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047789.1_2525026_2526238_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047789.1_2526230_2526671_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047789.1_2526832_2527597_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047789.1_2527588_2527840_-	NA	NA|422aa|down_6|NZ_CP047789.1_2528228_2529494_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047789.1_2529610_2532778_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047789.1_2532964_2533282_-	NA	NA|55aa|down_9|NZ_CP047789.1_2533526_2533691_-	NA
GCF_009911895.1_ASM991189v1	NZ_CP047789	Staphylococcus aureus strain UP_967 chromosome, complete genome	9	2648234-2648384	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_2|NZ_CP047789.1_2645593_2645686_-,NA|35aa|up_0|NZ_CP047789.1_2647797_2647902_+,NA|364aa|down_0|NZ_CP047789.1_2648401_2649493_-,NA|77aa|down_5|NZ_CP047789.1_2653281_2653512_+	NA|369aa|up_9|NZ_CP047789.1_2635206_2636313_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP047789.1_2636312_2636747_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP047789.1_2636758_2638891_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP047789.1_2638925_2640464_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP047789.1_2641144_2642950_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP047789.1_2643181_2643964_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP047789.1_2644031_2644889_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP047789.1_2645593_2645686_-	NA	NA|379aa|up_1|NZ_CP047789.1_2645974_2647111_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047789.1_2647797_2647902_+	NA	NA|364aa|down_0|NZ_CP047789.1_2648401_2649493_-	NA	NA|327aa|down_1|NZ_CP047789.1_2649758_2650739_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047789.1_2650740_2651061_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047789.1_2651212_2651878_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047789.1_2652312_2653251_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047789.1_2653281_2653512_+	NA	NA|458aa|down_6|NZ_CP047789.1_2654183_2655557_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047789.1_2656014_2656428_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047789.1_2656627_2657071_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047789.1_2657191_2657902_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
