assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	1	80649-80727	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	80672-80704|80672-80704|80672-80704|80672-80704|80672-80704	NZ_CP047820.1_697175-697143|NZ_CP047820.1_415660-415692|NZ_CP047820.1_1214533-1214565|NZ_CP047820.1_2207464-2207496|NZ_CP047820.1_607869-607901	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|31aa|up_6|NZ_CP047820.1_75255_75348_+,NA|37aa|up_2|NZ_CP047820.1_78353_78464_+,NA|138aa|up_1|NZ_CP047820.1_78492_78906_+,NA|129aa|down_1|NZ_CP047820.1_81884_82271_+,NA|92aa|down_6|NZ_CP047820.1_86256_86532_-	NA|177aa|up_9|NZ_CP047820.1_72571_73102_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP047820.1_73348_74419_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP047820.1_74486_75041_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP047820.1_75255_75348_+	NA	NA|167aa|up_5|NZ_CP047820.1_75429_75930_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP047820.1_76221_77535_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP047820.1_77536_78268_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP047820.1_78353_78464_+	NA	NA|138aa|up_1|NZ_CP047820.1_78492_78906_+	NA	NA|329aa|up_0|NZ_CP047820.1_79395_80382_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP047820.1_80909_81668_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP047820.1_81884_82271_+	NA	NA|234aa|down_2|NZ_CP047820.1_82285_82987_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP047820.1_82983_84027_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP047820.1_84016_84646_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP047820.1_84761_85979_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP047820.1_86256_86532_-	NA	NA|155aa|down_7|NZ_CP047820.1_86538_87003_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP047820.1_87149_87350_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP047820.1_87352_88609_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	2	903575-903761	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCC	19	3	27	903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903594-903630|903650-903686|903650-903686|903650-903686|903650-903686|903650-903686|903650-903686|903650-903686|903650-903686|903706-903742|903706-903742|903706-903742|903706-903742|903706-903742|903706-903742|903706-903742	NZ_CP047820.1_79196-79160|NZ_CP047820.1_79255-79219|NZ_CP047820.1_607967-607931|NZ_CP047820.1_1214517-1214481|NZ_CP047820.1_1262118-1262082|NZ_CP047820.1_697077-697113|NZ_CP047820.1_1261112-1261148|NZ_CP047820.1_1378074-1378110|NZ_CP047820.1_1883159-1883195|NZ_CP047820.1_978272-978236|NZ_CP047820.1_2317842-2317806|NZ_CP047820.1_907562-907598|NZ_CP047820.1_697135-697171|NZ_CP047820.1_1004468-1004432|NZ_CP047820.1_1214573-1214537|NZ_CP047820.1_1659282-1659318|NZ_CP047820.1_415700-415664|NZ_CP047820.1_607909-607873|NZ_CP047820.1_2207504-2207468|NZ_CP047820.1_903538-903574|NZ_CP047820.1_237260-237296|NZ_CP047820.1_69906-69870|NZ_CP047820.1_415758-415722|NZ_CP047820.1_1170635-1170599|NZ_CP047820.1_1220008-1219972|NZ_CP047820.1_1220063-1220027|NZ_CP047820.1_2292523-2292559	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|76aa|up_6|NZ_CP047820.1_896332_896560_-,NA|75aa|down_0|NZ_CP047820.1_903916_904141_-,NA|49aa|down_1|NZ_CP047820.1_904097_904244_-,NA|78aa|down_3|NZ_CP047820.1_906352_906586_+,NA|62aa|down_4|NZ_CP047820.1_907207_907393_+,NA|169aa|down_7|NZ_CP047820.1_909474_909981_-,NA|31aa|down_9|NZ_CP047820.1_911013_911106_+	NA|45aa|up_9|NZ_CP047820.1_893597_893732_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP047820.1_894643_894832_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP047820.1_895080_896028_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP047820.1_896332_896560_-	NA	NA|502aa|up_5|NZ_CP047820.1_896867_898373_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP047820.1_898595_899528_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP047820.1_899550_900552_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP047820.1_900990_901716_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP047820.1_901810_902536_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP047820.1_902643_903360_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047820.1_903916_904141_-	NA	NA|49aa|down_1|NZ_CP047820.1_904097_904244_-	NA	NA|320aa|down_2|NZ_CP047820.1_904916_905876_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047820.1_906352_906586_+	NA	NA|62aa|down_4|NZ_CP047820.1_907207_907393_+	NA	NA|117aa|down_5|NZ_CP047820.1_908214_908565_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047820.1_908718_909216_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047820.1_909474_909981_-	NA	NA|134aa|down_8|NZ_CP047820.1_910652_911054_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_9|NZ_CP047820.1_911013_911106_+	NA
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	3	907611-907855	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCGCCAACTTGCANNNT	19	1	1	907800-907836	NZ_CP047820.1_907856-907892	NA	4	4	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|75aa|up_4|NZ_CP047820.1_903916_904141_-,NA|49aa|up_3|NZ_CP047820.1_904097_904244_-,NA|78aa|up_1|NZ_CP047820.1_906352_906586_+,NA|62aa|up_0|NZ_CP047820.1_907207_907393_+,NA|169aa|down_2|NZ_CP047820.1_909474_909981_-,NA|31aa|down_4|NZ_CP047820.1_911013_911106_+,NA|56aa|down_6|NZ_CP047820.1_911945_912113_-	NA|311aa|up_9|NZ_CP047820.1_898595_899528_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP047820.1_899550_900552_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP047820.1_900990_901716_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP047820.1_901810_902536_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP047820.1_902643_903360_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP047820.1_903916_904141_-	NA	NA|49aa|up_3|NZ_CP047820.1_904097_904244_-	NA	NA|320aa|up_2|NZ_CP047820.1_904916_905876_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP047820.1_906352_906586_+	NA	NA|62aa|up_0|NZ_CP047820.1_907207_907393_+	NA	NA|117aa|down_0|NZ_CP047820.1_908214_908565_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP047820.1_908718_909216_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP047820.1_909474_909981_-	NA	NA|134aa|down_3|NZ_CP047820.1_910652_911054_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|NZ_CP047820.1_911013_911106_+	NA	NA|110aa|down_5|NZ_CP047820.1_911422_911752_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP047820.1_911945_912113_-	NA	NA|168aa|down_7|NZ_CP047820.1_912240_912744_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP047820.1_912736_913324_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP047820.1_913335_914136_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	4	1121571-1121879	3,2	CRT,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	5	1121684-1121709|1121684-1121709|1121798-1121823|1121798-1121823|1121824-1121856	NZ_CP047820.1_1214545-1214520|NZ_CP047820.1_1659310-1659335|NZ_CP047820.1_903566-903591|NZ_CP047820.1_1251639-1251664|NZ_CP047820.1_1170367-1170335	NA:NA	4,1	4	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|301aa|up_9|NZ_CP047820.1_1105695_1106598_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047820.1_1106763_1110417_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047820.1_1110417_1113894_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047820.1_1114053_1114629_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047820.1_1114644_1115169_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047820.1_1115173_1115749_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047820.1_1116073_1117405_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047820.1_1117755_1118961_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047820.1_1118950_1120330_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047820.1_1120571_1121501_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047820.1_1122003_1123248_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047820.1_1123356_1124547_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047820.1_1124854_1125982_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047820.1_1126343_1126721_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047820.1_1127136_1127730_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047820.1_1127793_1128177_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047820.1_1128307_1130713_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047820.1_1130705_1131134_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047820.1_1131145_1131475_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047820.1_1131467_1132964_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	5	1170615-1170696	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1170639-1170672|1170639-1170672	NZ_CP047820.1_607914-607947|NZ_CP047820.1_697130-697097	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047820.1_1171679_1171793_-	NA|414aa|up_9|NZ_CP047820.1_1161098_1162340_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047820.1_1162454_1163762_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047820.1_1163859_1164621_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047820.1_1164948_1165800_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047820.1_1166032_1166227_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047820.1_1166580_1167402_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047820.1_1167419_1168115_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047820.1_1168107_1169133_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047820.1_1169382_1169679_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047820.1_1169671_1170058_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047820.1_1170799_1171678_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047820.1_1171679_1171793_-	NA	NA|127aa|down_2|NZ_CP047820.1_1171856_1172237_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047820.1_1172394_1172751_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047820.1_1172894_1173215_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047820.1_1173364_1173904_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047820.1_1173986_1174703_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047820.1_1174850_1175273_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047820.1_1175671_1176166_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047820.1_1176320_1176938_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	6	1214546-1214631	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	1214576-1214601|1214576-1214601|1214576-1214601	NZ_CP047820.1_903591-903566|NZ_CP047820.1_1251664-1251639|NZ_CP047820.1_1251608-1251583	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|254aa|up_9|NZ_CP047820.1_1202528_1203290_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP047820.1_1203411_1204602_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP047820.1_1204740_1205751_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP047820.1_1205803_1206817_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP047820.1_1207518_1208148_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP047820.1_1208850_1209753_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP047820.1_1209995_1210583_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP047820.1_1211155_1212100_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP047820.1_1212209_1213205_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP047820.1_1213201_1214113_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP047820.1_1214992_1215928_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP047820.1_1215994_1217434_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP047820.1_1217441_1217927_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP047820.1_1217934_1218774_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP047820.1_1218779_1219712_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP047820.1_1220373_1223220_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP047820.1_1223227_1225213_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP047820.1_1225481_1225718_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP047820.1_1225714_1226365_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP047820.1_1226538_1227378_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	7	1377056-1377148	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|239aa|up_5|NZ_CP047820.1_1371923_1372640_-,NA|169aa|up_4|NZ_CP047820.1_1372801_1373308_-,NA|36aa|down_3|NZ_CP047820.1_1380556_1380664_-	NA|75aa|up_9|NZ_CP047820.1_1368045_1368270_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047820.1_1368464_1369394_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047820.1_1370341_1370716_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047820.1_1370966_1371755_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047820.1_1371923_1372640_-	NA	NA|169aa|up_4|NZ_CP047820.1_1372801_1373308_-	NA	NA|267aa|up_3|NZ_CP047820.1_1373443_1374244_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047820.1_1374227_1374947_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047820.1_1375001_1375952_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047820.1_1376099_1376927_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047820.1_1377365_1378001_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047820.1_1378389_1380051_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047820.1_1380047_1380431_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP047820.1_1380556_1380664_-	NA	NA|337aa|down_4|NZ_CP047820.1_1380738_1381749_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP047820.1_1382247_1382769_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP047820.1_1382796_1384092_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP047820.1_1384131_1384608_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP047820.1_1384776_1385313_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP047820.1_1385523_1386462_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	8	1620568-1620669	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047820.1_1612186_1612723_+,NA|221aa|up_1|NZ_CP047820.1_1618814_1619477_+,NA|34aa|down_0|NZ_CP047820.1_1621341_1621443_-,NA|98aa|down_5|NZ_CP047820.1_1626430_1626724_+,NA|128aa|down_7|NZ_CP047820.1_1627677_1628061_+,NA|70aa|down_9|NZ_CP047820.1_1628885_1629095_+	NA|91aa|up_9|NZ_CP047820.1_1610418_1610691_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047820.1_1611089_1611794_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047820.1_1612186_1612723_+	NA	NA|514aa|up_6|NZ_CP047820.1_1612835_1614377_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047820.1_1614401_1615868_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047820.1_1615905_1617174_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047820.1_1617173_1617752_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047820.1_1618264_1618672_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047820.1_1618814_1619477_+	NA	NA|319aa|up_0|NZ_CP047820.1_1619594_1620551_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP047820.1_1621341_1621443_-	NA	NA|463aa|down_1|NZ_CP047820.1_1621527_1622916_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047820.1_1622996_1623752_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047820.1_1624243_1624813_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047820.1_1624828_1626352_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP047820.1_1626430_1626724_+	NA	NA|209aa|down_6|NZ_CP047820.1_1626796_1627423_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP047820.1_1627677_1628061_+	NA	NA|194aa|down_8|NZ_CP047820.1_1628126_1628708_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP047820.1_1628885_1629095_+	NA
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	9	2041751-2041924	1,7	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	17	2041804-2041820|2041804-2041820|2041804-2041820|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889|2041874-2041889	NZ_CP047820.1_1740065-1740049|NZ_CP047820.1_1219970-1219986|NZ_CP047820.1_1220025-1220041|NZ_CP047820.1_69767-69782|NZ_CP047820.1_69825-69840|NZ_CP047820.1_607886-607901|NZ_CP047820.1_692746-692761|NZ_CP047820.1_697158-697143|NZ_CP047820.1_903561-903546|NZ_CP047820.1_1004445-1004460|NZ_CP047820.1_1170342-1170357|NZ_CP047820.1_1659305-1659290|NZ_CP047820.1_2207481-2207496|NZ_CP047820.1_237169-237154|NZ_CP047820.1_415677-415692|NZ_CP047820.1_651099-651114|NZ_CP047820.1_2394610-2394625	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|60aa|up_1|NZ_CP047820.1_2038710_2038890_+,NA	NA|205aa|up_9|NZ_CP047820.1_2032428_2033043_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP047820.1_2033035_2034286_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP047820.1_2034301_2035315_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP047820.1_2035283_2035862_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP047820.1_2035858_2036437_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP047820.1_2036429_2037134_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP047820.1_2037130_2037889_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP047820.1_2037885_2038518_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP047820.1_2038710_2038890_+	NA	NA|681aa|up_0|NZ_CP047820.1_2039610_2041653_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP047820.1_2042099_2043152_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP047820.1_2043138_2044011_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP047820.1_2044007_2044313_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP047820.1_2044276_2045515_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP047820.1_2045678_2046239_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP047820.1_2047086_2047749_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP047820.1_2047765_2048458_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP047820.1_2048454_2049222_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP047820.1_2049456_2049957_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP047820.1_2049959_2050436_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	10	2483791-2483996	4,2	CRT,PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA,TCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAA	23,54	3	11	2483814-2483846|2483814-2483846|2483814-2483846|2483870-2483901|2483870-2483901|2483870-2483901|2483870-2483901|2483925-2483957|2483925-2483957|2483925-2483957|2483925-2483957	NZ_CP047820.1_697175-697143|NZ_CP047820.1_1214533-1214565|NZ_CP047820.1_2207464-2207496|NZ_CP047820.1_237300-237269|NZ_CP047820.1_69866-69897|NZ_CP047820.1_415718-415749|NZ_CP047820.1_978174-978205|NZ_CP047820.1_697175-697143|NZ_CP047820.1_607869-607901|NZ_CP047820.1_1214533-1214565|NZ_CP047820.1_2207464-2207496	NA:NA	3,2	3	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|57aa|down_0|NZ_CP047820.1_2484039_2484210_-,NA|84aa|down_5|NZ_CP047820.1_2487349_2487601_-,NA|106aa|down_8|NZ_CP047820.1_2492725_2493043_-,NA|55aa|down_9|NZ_CP047820.1_2493287_2493452_-	NA|202aa|up_9|NZ_CP047820.1_2476685_2477291_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047820.1_2477460_2478465_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047820.1_2478495_2479002_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047820.1_2479003_2479498_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047820.1_2479560_2480820_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047820.1_2480816_2481302_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047820.1_2481315_2481762_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047820.1_2481767_2482001_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047820.1_2482007_2482607_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047820.1_2482626_2483649_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047820.1_2484039_2484210_-	NA	NA|117aa|down_1|NZ_CP047820.1_2484335_2484686_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047820.1_2484787_2485999_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047820.1_2485991_2486432_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047820.1_2486593_2487358_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047820.1_2487349_2487601_-	NA	NA|422aa|down_6|NZ_CP047820.1_2487989_2489255_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047820.1_2489371_2492539_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047820.1_2492725_2493043_-	NA	NA|55aa|down_9|NZ_CP047820.1_2493287_2493452_-	NA
GCF_009911965.1_ASM991196v1	NZ_CP047820	Staphylococcus aureus strain UP_1395 chromosome, complete genome	11	2607992-2608142	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|31aa|up_2|NZ_CP047820.1_2605351_2605444_-,NA|35aa|up_0|NZ_CP047820.1_2607555_2607660_+,NA|364aa|down_0|NZ_CP047820.1_2608159_2609251_-,NA|77aa|down_5|NZ_CP047820.1_2613039_2613270_+	NA|369aa|up_9|NZ_CP047820.1_2594964_2596071_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP047820.1_2596070_2596505_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP047820.1_2596516_2598649_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP047820.1_2598683_2600222_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP047820.1_2600902_2602708_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP047820.1_2602939_2603722_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP047820.1_2603789_2604647_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP047820.1_2605351_2605444_-	NA	NA|379aa|up_1|NZ_CP047820.1_2605732_2606869_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047820.1_2607555_2607660_+	NA	NA|364aa|down_0|NZ_CP047820.1_2608159_2609251_-	NA	NA|327aa|down_1|NZ_CP047820.1_2609516_2610497_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047820.1_2610498_2610819_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047820.1_2610970_2611636_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047820.1_2612070_2613009_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047820.1_2613039_2613270_+	NA	NA|458aa|down_6|NZ_CP047820.1_2613941_2615315_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047820.1_2615772_2616186_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047820.1_2616385_2616829_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047820.1_2616949_2617660_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
