assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	1	224845-224923	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	1	1	224868-224900	NZ_CP047813.1_369914-369882	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|188aa|up_9|NZ_CP047813.1_207297_207861_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP047813.1_207857_208811_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP047813.1_208920_210102_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|up_6|NZ_CP047813.1_210393_212808_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP047813.1_212829_213141_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP047813.1_213466_220027_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP047813.1_220143_221412_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP047813.1_221818_223480_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP047813.1_223476_224172_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP047813.1_224188_224611_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP047813.1_225224_226634_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP047813.1_226637_227486_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP047813.1_228035_228827_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP047813.1_228841_229486_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP047813.1_229965_230808_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP047813.1_230932_231244_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP047813.1_231330_232407_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP047813.1_232471_232783_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP047813.1_232882_233740_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP047813.1_233768_234365_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2	879098-879183	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	2	879128-879153|879128-879153	NZ_CP047813.1_1227915-1227940|NZ_CP047813.1_2023476-2023451	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|76aa|up_5|NZ_CP047813.1_871840_872068_-,NA|75aa|down_0|NZ_CP047813.1_879365_879590_-,NA|49aa|down_1|NZ_CP047813.1_879546_879693_-,NA|78aa|down_3|NZ_CP047813.1_881801_882035_+,NA|62aa|down_4|NZ_CP047813.1_882656_882842_+,NA|169aa|down_7|NZ_CP047813.1_884698_885205_-,NA|27aa|down_9|NZ_CP047813.1_886242_886323_+	NA|45aa|up_9|NZ_CP047813.1_868919_869054_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|up_8|NZ_CP047813.1_869110_869245_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_7|NZ_CP047813.1_870150_870339_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_6|NZ_CP047813.1_870587_871535_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_5|NZ_CP047813.1_871840_872068_-	NA	NA|502aa|up_4|NZ_CP047813.1_872374_873880_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_3|NZ_CP047813.1_874102_875035_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_2|NZ_CP047813.1_875057_876059_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_1|NZ_CP047813.1_876496_877222_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_0|NZ_CP047813.1_877316_878042_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047813.1_879365_879590_-	NA	NA|49aa|down_1|NZ_CP047813.1_879546_879693_-	NA	NA|320aa|down_2|NZ_CP047813.1_880365_881325_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047813.1_881801_882035_+	NA	NA|62aa|down_4|NZ_CP047813.1_882656_882842_+	NA	NA|117aa|down_5|NZ_CP047813.1_883438_883789_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047813.1_883942_884440_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047813.1_884698_885205_-	NA	NA|132aa|down_8|NZ_CP047813.1_885875_886271_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|27aa|down_9|NZ_CP047813.1_886242_886323_+	NA
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	3	998513-998625	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AACCCTGACAACCCTAATAATCC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|35aa|down_6|NZ_CP047813.1_1005091_1005196_-	NA|202aa|up_9|NZ_CP047813.1_984598_985204_+	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|97aa|up_8|NZ_CP047813.1_985200_985491_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|398aa|up_7|NZ_CP047813.1_986027_987221_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|406aa|up_6|NZ_CP047813.1_987671_988889_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|157aa|up_5|NZ_CP047813.1_988936_989407_+	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|145aa|up_4|NZ_CP047813.1_989561_989996_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|1257aa|up_3|NZ_CP047813.1_990223_993994_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|140aa|up_2|NZ_CP047813.1_994199_994619_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|337aa|up_1|NZ_CP047813.1_994771_995782_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|385aa|up_0|NZ_CP047813.1_995977_997132_+	PRK07683, PRK07683, aminotransferase A; Validated	NA|394aa|down_0|NZ_CP047813.1_998752_999934_+	pfam05543, Peptidase_C47, Staphopain peptidase C47	NA|110aa|down_1|NZ_CP047813.1_999971_1000301_+	pfam09023, Staphostatin_B, Staphostatin B	NA|274aa|down_2|NZ_CP047813.1_1000539_1001361_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|268aa|down_3|NZ_CP047813.1_1001353_1002157_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|558aa|down_4|NZ_CP047813.1_1002143_1003817_-	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	NA|404aa|down_5|NZ_CP047813.1_1003803_1005015_-	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|35aa|down_6|NZ_CP047813.1_1005091_1005196_-	NA	NA|313aa|down_7|NZ_CP047813.1_1005346_1006285_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|184aa|down_8|NZ_CP047813.1_1006336_1006888_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|97aa|down_9|NZ_CP047813.1_1006977_1007268_+	COG2314, XynA, Predicted membrane protein [Function unknown]
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	4	1098291-1098369	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	1	1	1098314-1098346	NZ_CP047813.1_1147176-1147144	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047813.1_1082238_1083141_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047813.1_1083306_1086960_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047813.1_1086960_1090437_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047813.1_1090596_1091172_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047813.1_1091187_1091712_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047813.1_1091716_1092292_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047813.1_1092616_1093948_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047813.1_1094297_1095503_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047813.1_1095492_1096872_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047813.1_1097113_1098043_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047813.1_1098493_1099738_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047813.1_1099846_1101037_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047813.1_1101344_1102472_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047813.1_1102833_1103211_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047813.1_1103625_1104219_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047813.1_1104282_1104666_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047813.1_1104796_1107202_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047813.1_1107194_1107623_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047813.1_1107634_1107964_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047813.1_1107956_1109453_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	5	1147424-1147505	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1147448-1147481	NZ_CP047813.1_670887-670854	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_1|NZ_CP047813.1_1148488_1148602_-	NA|414aa|up_9|NZ_CP047813.1_1137815_1139057_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047813.1_1139171_1140479_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047813.1_1140576_1141338_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047813.1_1141665_1142517_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047813.1_1142750_1142945_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047813.1_1143333_1144155_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047813.1_1144172_1144868_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047813.1_1144860_1145886_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047813.1_1146135_1146432_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047813.1_1146424_1146811_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047813.1_1147608_1148487_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047813.1_1148488_1148602_-	NA	NA|127aa|down_2|NZ_CP047813.1_1148665_1149046_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047813.1_1149203_1149560_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047813.1_1149703_1150024_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047813.1_1150173_1150713_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047813.1_1150795_1151512_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047813.1_1151659_1152082_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047813.1_1152480_1152975_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047813.1_1153129_1153747_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	6	1183552-1183638	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGGGTGTGGGCCCCAACATAG	29	1	22	1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609|1183581-1183609	NZ_CP047813.1_78193-78221|NZ_CP047813.1_402431-402459|NZ_CP047813.1_670987-670959|NZ_CP047813.1_953730-953758|NZ_CP047813.1_1147407-1147435|NZ_CP047813.1_1196228-1196256|NZ_CP047813.1_1238558-1238586|NZ_CP047813.1_1361871-1361843|NZ_CP047813.1_1722248-1722220|NZ_CP047813.1_1840509-1840481|NZ_CP047813.1_1840566-1840538|NZ_CP047813.1_1840623-1840595|NZ_CP047813.1_2138063-2138035|NZ_CP047813.1_2257119-2257091|NZ_CP047813.1_2469531-2469559|NZ_CP047813.1_68844-68872|NZ_CP047813.1_224952-224924|NZ_CP047813.1_369711-369739|NZ_CP047813.1_369944-369972|NZ_CP047813.1_1078706-1078734|NZ_CP047813.1_1147081-1147109|NZ_CP047813.1_1361813-1361785	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|153aa|up_6|NZ_CP047813.1_1175085_1175544_-,NA	NA|791aa|up_9|NZ_CP047813.1_1171523_1173896_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP047813.1_1173929_1174670_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP047813.1_1174785_1175019_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP047813.1_1175085_1175544_-	NA	NA|435aa|up_5|NZ_CP047813.1_1175882_1177187_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP047813.1_1177316_1178834_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP047813.1_1178836_1179598_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP047813.1_1179719_1180910_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP047813.1_1181048_1182059_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP047813.1_1182111_1183125_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP047813.1_1183886_1184516_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP047813.1_1185218_1186121_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP047813.1_1186363_1186951_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP047813.1_1187523_1188468_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP047813.1_1188578_1189574_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP047813.1_1189570_1190482_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP047813.1_1191249_1192185_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP047813.1_1192251_1193691_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP047813.1_1193698_1194184_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP047813.1_1194191_1195031_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	7	1190759-1190849	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAATGCAAGTTGGGGTGTGGGCCCCAACACAGA	33	1	19	1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816|1190792-1190816	NZ_CP047813.1_78194-78218|NZ_CP047813.1_402432-402456|NZ_CP047813.1_953731-953755|NZ_CP047813.1_1147408-1147432|NZ_CP047813.1_1196229-1196253|NZ_CP047813.1_1238559-1238583|NZ_CP047813.1_2469532-2469556|NZ_CP047813.1_670986-670962|NZ_CP047813.1_1361870-1361846|NZ_CP047813.1_1722247-1722223|NZ_CP047813.1_1840508-1840484|NZ_CP047813.1_1840565-1840541|NZ_CP047813.1_1840622-1840598|NZ_CP047813.1_2138062-2138038|NZ_CP047813.1_2257118-2257094|NZ_CP047813.1_369712-369736|NZ_CP047813.1_369945-369969|NZ_CP047813.1_1078707-1078731|NZ_CP047813.1_1361812-1361788	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|254aa|up_9|NZ_CP047813.1_1178836_1179598_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP047813.1_1179719_1180910_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP047813.1_1181048_1182059_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP047813.1_1182111_1183125_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP047813.1_1183886_1184516_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP047813.1_1185218_1186121_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP047813.1_1186363_1186951_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP047813.1_1187523_1188468_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP047813.1_1188578_1189574_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP047813.1_1189570_1190482_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP047813.1_1191249_1192185_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP047813.1_1192251_1193691_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP047813.1_1193698_1194184_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP047813.1_1194191_1195031_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP047813.1_1195036_1195969_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP047813.1_1196630_1199477_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP047813.1_1199484_1201470_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP047813.1_1201738_1201975_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP047813.1_1201971_1202622_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP047813.1_1202795_1203635_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	8	1353210-1353503	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CTTTAGCGATTAGAGGCTTTTATGCAGTTGTGCCTTAGNATC	42	0	0	NA	NA	NA	4	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP047813.1_1348113_1348830_-,NA|169aa|up_4|NZ_CP047813.1_1348991_1349498_-,NA	NA|75aa|up_9|NZ_CP047813.1_1344237_1344462_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047813.1_1344656_1345586_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047813.1_1346533_1346908_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047813.1_1347156_1347945_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047813.1_1348113_1348830_-	NA	NA|169aa|up_4|NZ_CP047813.1_1348991_1349498_-	NA	NA|267aa|up_3|NZ_CP047813.1_1349633_1350434_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047813.1_1350417_1351137_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047813.1_1351191_1352142_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047813.1_1352289_1353117_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047813.1_1353617_1354253_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047813.1_1354588_1356250_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047813.1_1356246_1356630_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_CP047813.1_1356938_1357949_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_CP047813.1_1358447_1358969_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_CP047813.1_1358996_1360292_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_CP047813.1_1360331_1360808_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_CP047813.1_1360976_1361513_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_CP047813.1_1362013_1362952_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_CP047813.1_1363221_1363848_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	9	1722141-1722219	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCAGCCAACTTGCA	23	1	3	1722164-1722196|1722164-1722196|1722164-1722196	NZ_CP047813.1_1227895-1227927|NZ_CP047813.1_1361729-1361761|NZ_CP047813.1_402402-402370	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|131aa|up_6|NZ_CP047813.1_1716587_1716980_-,NA|45aa|up_1|NZ_CP047813.1_1720930_1721065_-,NA	NA|317aa|up_9|NZ_CP047813.1_1712581_1713532_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|331aa|up_8|NZ_CP047813.1_1713857_1714850_-	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_7|NZ_CP047813.1_1715083_1716460_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|131aa|up_6|NZ_CP047813.1_1716587_1716980_-	NA	NA|333aa|up_5|NZ_CP047813.1_1717360_1718359_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|294aa|up_4|NZ_CP047813.1_1718590_1719472_+	pfam06800, Sugar_transport, Sugar transport protein	NA|135aa|up_3|NZ_CP047813.1_1719486_1719891_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|305aa|up_2|NZ_CP047813.1_1719918_1720833_+	TIGR02152, Putative_ribokinase, ribokinase	NA|45aa|up_1|NZ_CP047813.1_1720930_1721065_-	NA	NA|254aa|up_0|NZ_CP047813.1_1721083_1721845_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|479aa|down_0|NZ_CP047813.1_1722338_1723775_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|264aa|down_1|NZ_CP047813.1_1723790_1724582_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|235aa|down_2|NZ_CP047813.1_1724730_1725435_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|234aa|down_3|NZ_CP047813.1_1725542_1726244_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|down_4|NZ_CP047813.1_1726236_1726680_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|down_5|NZ_CP047813.1_1726792_1727533_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|down_6|NZ_CP047813.1_1727535_1729275_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|down_7|NZ_CP047813.1_1729533_1730208_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|down_8|NZ_CP047813.1_1730351_1732073_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|down_9|NZ_CP047813.1_1732105_1733794_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	10	2137965-2138046	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	2137989-2138022|2137989-2138022	NZ_CP047813.1_670854-670887|NZ_CP047813.1_1840435-1840468	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|167aa|down_1|NZ_CP047813.1_2138713_2139214_-,NA|43aa|down_3|NZ_CP047813.1_2140135_2140264_+,NA|163aa|down_8|NZ_CP047813.1_2146555_2147044_+	NA|369aa|up_9|NZ_CP047813.1_2129407_2130514_+	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|447aa|up_8|NZ_CP047813.1_2130507_2131848_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|297aa|up_7|NZ_CP047813.1_2131944_2132835_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|277aa|up_6|NZ_CP047813.1_2132981_2133812_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|337aa|up_5|NZ_CP047813.1_2133831_2134842_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|235aa|up_4|NZ_CP047813.1_2134939_2135644_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|186aa|up_3|NZ_CP047813.1_2135636_2136194_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|100aa|up_2|NZ_CP047813.1_2136324_2136624_+	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_1|NZ_CP047813.1_2136643_2137465_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|126aa|up_0|NZ_CP047813.1_2137481_2137859_+	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|77aa|down_0|NZ_CP047813.1_2138263_2138494_-	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_1|NZ_CP047813.1_2138713_2139214_-	NA	NA|190aa|down_2|NZ_CP047813.1_2139411_2139981_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|43aa|down_3|NZ_CP047813.1_2140135_2140264_+	NA	NA|352aa|down_4|NZ_CP047813.1_2140390_2141446_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|234aa|down_5|NZ_CP047813.1_2142053_2142755_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|604aa|down_6|NZ_CP047813.1_2143441_2145253_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|down_7|NZ_CP047813.1_2145613_2146381_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|down_8|NZ_CP047813.1_2146555_2147044_+	NA	NA|498aa|down_9|NZ_CP047813.1_2147036_2148530_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	11	2219849-2219982	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|101aa|up_0|NZ_CP047813.1_2216922_2217225_+,NA|68aa|down_3|NZ_CP047813.1_2226479_2226683_+,NA|103aa|down_4|NZ_CP047813.1_2226790_2227099_-,NA|89aa|down_5|NZ_CP047813.1_2227238_2227505_-	NA|204aa|up_9|NZ_CP047813.1_2205430_2206042_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047813.1_2206588_2207866_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047813.1_2208774_2210598_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047813.1_2210736_2211153_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047813.1_2211383_2212076_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP047813.1_2212240_2213005_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047813.1_2213158_2213839_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047813.1_2213862_2215416_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047813.1_2215532_2216891_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|101aa|up_0|NZ_CP047813.1_2216922_2217225_+	NA	NA|959aa|down_0|NZ_CP047813.1_2221175_2224052_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP047813.1_2224231_2225098_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|398aa|down_2|NZ_CP047813.1_2225275_2226469_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|68aa|down_3|NZ_CP047813.1_2226479_2226683_+	NA	NA|103aa|down_4|NZ_CP047813.1_2226790_2227099_-	NA	NA|89aa|down_5|NZ_CP047813.1_2227238_2227505_-	NA	NA|603aa|down_6|NZ_CP047813.1_2227788_2229597_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|531aa|down_7|NZ_CP047813.1_2229684_2231277_+	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|403aa|down_8|NZ_CP047813.1_2231346_2232555_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|262aa|down_9|NZ_CP047813.1_2233115_2233901_+	pfam04507, DUF576, Csa1 family
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	12	2292829-2292907	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGAGCCCCAACA	23	1	2	2292852-2292884|2292852-2292884	NZ_CP047813.1_1722140-1722108|NZ_CP047813.1_2682690-2682658	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|220aa|up_3|NZ_CP047813.1_2289752_2290412_-,NA|36aa|up_0|NZ_CP047813.1_2292401_2292509_+,NA|56aa|down_2|NZ_CP047813.1_2296964_2297132_+	NA|693aa|up_9|NZ_CP047813.1_2282214_2284293_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047813.1_2284430_2285840_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047813.1_2286125_2286932_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047813.1_2286994_2287651_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047813.1_2287763_2288237_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047813.1_2288359_2289571_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047813.1_2289752_2290412_-	NA	NA|381aa|up_2|NZ_CP047813.1_2290471_2291614_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047813.1_2291881_2292268_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047813.1_2292401_2292509_+	NA	NA|588aa|down_0|NZ_CP047813.1_2293212_2294976_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047813.1_2295000_2296734_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP047813.1_2296964_2297132_+	NA	NA|229aa|down_3|NZ_CP047813.1_2297186_2297873_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP047813.1_2297850_2299209_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP047813.1_2299210_2300218_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP047813.1_2300195_2301311_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP047813.1_2301321_2302014_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP047813.1_2302024_2302492_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP047813.1_2302543_2303521_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_009912015.1_ASM991201v1	NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	13	2566473-2566558	11	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	ACTAATGATACGCAAACATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|53aa|down_7|NZ_CP047813.1_2577520_2577679_-,NA|35aa|down_8|NZ_CP047813.1_2578358_2578463_+,NA|364aa|down_9|NZ_CP047813.1_2578961_2580053_-	NA|396aa|up_9|NZ_CP047813.1_2541795_2542983_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP047813.1_2543001_2543685_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP047813.1_2543863_2545207_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP047813.1_2545305_2545779_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP047813.1_2546101_2547544_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP047813.1_2547691_2548756_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP047813.1_2554845_2555754_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047813.1_2555942_2556752_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047813.1_2556753_2557686_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047813.1_2557712_2559068_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047813.1_2567180_2568287_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047813.1_2568286_2568721_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047813.1_2568732_2570865_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|511aa|down_3|NZ_CP047813.1_2570905_2572438_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047813.1_2573118_2574924_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047813.1_2575155_2575938_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047813.1_2576005_2576863_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047813.1_2577520_2577679_-	NA	NA|35aa|down_8|NZ_CP047813.1_2578358_2578463_+	NA	NA|364aa|down_9|NZ_CP047813.1_2578961_2580053_-	NA
