assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	1	509214-509298	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	509240-509272|509240-509272	NZ_CP047779.1_743884-743916|NZ_CP047779.1_2108975-2108943	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP047779.1_507654_507753_+,NA	NA|357aa|up_9|NZ_CP047779.1_497663_498734_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP047779.1_499051_500107_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP047779.1_500270_500912_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP047779.1_501055_501922_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP047779.1_502285_503368_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP047779.1_503360_504035_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP047779.1_504095_504668_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP047779.1_505081_507613_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP047779.1_507654_507753_+	NA	NA|370aa|up_0|NZ_CP047779.1_507927_509038_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP047779.1_509806_510646_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|549aa|down_1|NZ_CP047779.1_510687_512334_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|217aa|down_2|NZ_CP047779.1_512728_513379_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_3|NZ_CP047779.1_513375_513612_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_4|NZ_CP047779.1_513880_515866_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_5|NZ_CP047779.1_515873_518720_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_6|NZ_CP047779.1_519330_520263_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_7|NZ_CP047779.1_520268_521111_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_8|NZ_CP047779.1_521118_521604_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_9|NZ_CP047779.1_521611_523051_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2	618104-618189	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	618134-618159|618134-618159	NZ_CP047779.1_1850430-1850455|NZ_CP047779.1_1910489-1910514	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP047779.1_606993_608490_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047779.1_608482_608812_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047779.1_608823_609252_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047779.1_609244_611650_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047779.1_611780_612164_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047779.1_612227_612821_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047779.1_613235_613613_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047779.1_613974_615102_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047779.1_615409_616600_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047779.1_616708_617953_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047779.1_618347_619277_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047779.1_619518_620898_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047779.1_620887_622093_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047779.1_622443_623775_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047779.1_624100_624676_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047779.1_624680_625205_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047779.1_625220_625796_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047779.1_625955_629432_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047779.1_629432_633086_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047779.1_633251_634154_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	3	919298-919390	3	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP047779.1_909172_909817_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047779.1_909823_910465_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047779.1_910845_911034_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047779.1_911476_911851_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047779.1_911865_913512_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047779.1_913701_915762_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047779.1_915964_916537_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047779.1_916541_917528_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047779.1_917520_918447_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047779.1_918439_919174_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047779.1_919479_919713_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047779.1_919828_920560_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047779.1_920706_924273_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047779.1_924272_925523_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047779.1_925509_925842_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047779.1_925867_927235_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047779.1_927669_927945_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047779.1_928132_928636_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047779.1_928635_929373_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047779.1_929475_929826_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	4	1642221-1642348	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP047779.1_1634380_1634776_-,NA|51aa|up_6|NZ_CP047779.1_1635376_1635529_-,NA	NA|274aa|up_9|NZ_CP047779.1_1631522_1632344_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047779.1_1632799_1634185_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047779.1_1634380_1634776_-	NA	NA|51aa|up_6|NZ_CP047779.1_1635376_1635529_-	NA	NA|200aa|up_5|NZ_CP047779.1_1635553_1636153_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047779.1_1636311_1636782_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047779.1_1636786_1637929_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047779.1_1638064_1638793_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047779.1_1638779_1640237_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047779.1_1640495_1641557_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047779.1_1650385_1650832_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047779.1_1650928_1651879_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047779.1_1651884_1652340_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047779.1_1652420_1653710_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047779.1_1654002_1655097_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP047779.1_1655287_1657024_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP047779.1_1657314_1657857_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP047779.1_1658159_1659197_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP047779.1_1659348_1660326_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP047779.1_1660586_1661423_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	5	1730616-1730807	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	1730637-1730673|1730695-1730728|1730695-1730728|1730695-1730728|1730695-1730728|1730695-1730728|1730695-1730728|1730695-1730728|1730695-1730728	NZ_CP047779.1_524415-524451|NZ_CP047779.1_42319-42286|NZ_CP047779.1_476108-476075|NZ_CP047779.1_509279-509312|NZ_CP047779.1_770099-770132|NZ_CP047779.1_1464239-1464206|NZ_CP047779.1_2074655-2074688|NZ_CP047779.1_2216670-2216637|NZ_CP047779.1_2810759-2810726	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP047779.1_1722021_1722132_-,NA|31aa|up_5|NZ_CP047779.1_1725137_1725230_-,NA|49aa|down_0|NZ_CP047779.1_1731111_1731258_-	NA|37aa|up_9|NZ_CP047779.1_1722021_1722132_-	NA	NA|244aa|up_8|NZ_CP047779.1_1722217_1722949_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP047779.1_1722950_1724264_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP047779.1_1724555_1725056_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP047779.1_1725137_1725230_-	NA	DEDDh|185aa|up_4|NZ_CP047779.1_1725446_1726001_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP047779.1_1726067_1727138_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP047779.1_1727384_1727915_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP047779.1_1728084_1729446_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP047779.1_1729526_1730474_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP047779.1_1731111_1731258_-	NA	NA|476aa|down_1|NZ_CP047779.1_1731296_1732724_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP047779.1_1732736_1734194_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP047779.1_1734195_1734498_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP047779.1_1734864_1736403_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP047779.1_1736491_1737691_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP047779.1_1737703_1739707_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP047779.1_1739710_1741903_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP047779.1_1741899_1742592_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP047779.1_1742774_1743077_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	6	1976150-1976351	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP047779.1_1957566_1957671_-,NA|53aa|up_7|NZ_CP047779.1_1958350_1958509_+,NA	NA|549aa|up_9|NZ_CP047779.1_1955494_1957141_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP047779.1_1957566_1957671_-	NA	NA|53aa|up_7|NZ_CP047779.1_1958350_1958509_+	NA	NA|286aa|up_6|NZ_CP047779.1_1959167_1960025_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP047779.1_1960092_1960875_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP047779.1_1961106_1962912_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP047779.1_1963592_1965131_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP047779.1_1965165_1967298_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP047779.1_1967309_1967744_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP047779.1_1967743_1968850_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP047779.1_1976839_1978195_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP047779.1_1978221_1979154_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP047779.1_1979155_1979965_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP047779.1_1980154_1981063_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP047779.1_1987280_1988345_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP047779.1_1990124_1990598_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP047779.1_1990719_1992063_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP047779.1_1992240_1992924_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP047779.1_1992942_1994130_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP047779.1_1994173_1994689_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	7	2034684-2034809	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP047779.1_2025090_2025258_+,NA|61aa|up_1|NZ_CP047779.1_2033606_2033789_-,NA	NA|139aa|up_9|NZ_CP047779.1_2024431_2024848_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP047779.1_2025090_2025258_+	NA	NA|809aa|up_7|NZ_CP047779.1_2025254_2027681_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP047779.1_2027740_2028595_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP047779.1_2028805_2029621_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP047779.1_2029915_2030341_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP047779.1_2030731_2031436_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP047779.1_2031472_2033137_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP047779.1_2033606_2033789_-	NA	NA|60aa|up_0|NZ_CP047779.1_2034438_2034618_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP047779.1_2034866_2036303_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP047779.1_2036651_2037050_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP047779.1_2037063_2037501_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP047779.1_2037749_2038544_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP047779.1_2038548_2039355_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP047779.1_2039344_2040205_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP047779.1_2040201_2041011_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP047779.1_2041386_2042954_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP047779.1_2043206_2043575_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP047779.1_2043591_2044536_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_009912155.1_ASM991215v1	NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	8	2074691-2074771	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2074716-2074746|2074716-2074746|2074716-2074746|2074716-2074746|2074716-2074746|2074716-2074746	NZ_CP047779.1_770162-770192|NZ_CP047779.1_1344293-1344323|NZ_CP047779.1_524539-524569|NZ_CP047779.1_1720079-1720109|NZ_CP047779.1_573296-573266|NZ_CP047779.1_618125-618095	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP047779.1_2065220_2065385_+,NA|106aa|up_8|NZ_CP047779.1_2065629_2065947_+,NA|84aa|up_5|NZ_CP047779.1_2071071_2071323_+,NA|57aa|up_0|NZ_CP047779.1_2074463_2074634_+,NA	NA|55aa|up_9|NZ_CP047779.1_2065220_2065385_+	NA	NA|106aa|up_8|NZ_CP047779.1_2065629_2065947_+	NA	NA|1056aa|up_7|NZ_CP047779.1_2066133_2069301_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047779.1_2069417_2070683_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047779.1_2071071_2071323_+	NA	NA|255aa|up_4|NZ_CP047779.1_2071314_2072079_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047779.1_2072241_2072682_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047779.1_2072674_2073886_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047779.1_2073987_2074338_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047779.1_2074463_2074634_+	NA	NA|341aa|down_0|NZ_CP047779.1_2074914_2075937_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047779.1_2075956_2076556_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047779.1_2076562_2076796_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047779.1_2076801_2077248_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047779.1_2077261_2077747_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047779.1_2077743_2079003_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047779.1_2079065_2079560_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047779.1_2079561_2080068_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047779.1_2080096_2081101_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047779.1_2081268_2081874_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
