The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	0	60572	2746804	head,capsid,protease,portal,tRNA,holin,tail,plate	Staphylococcus_phage(61.76%)	58	NA	NA
WP_001100669.1|1366_2605_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|2588_3362_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|3373_4537_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|4605_4884_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|4895_5228_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|5224_5626_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|5626_6022_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|6056_6698_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|6789_7245_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|7302_7653_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|7694_7853_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_160188107.1|7866_14067_+|tail	phage tail tape measure protein	tail	A0A2I6PE73	Staphylococcus_phage	98.8	0.0e+00
WP_001190533.1|14066_14891_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384462.1|14899_16483_+	peptidase	NA	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_000179860.1|16482_16773_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429551.1|16788_18699_+	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000067129.1|18698_20165_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	100.0	1.8e-274
WP_001166599.1|20164_20554_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|20546_20711_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|20756_21056_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339141.1|21191_21494_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000909205.1|21504_22959_+	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	99.6	2.8e-288
WP_000209712.1|23680_23896_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_160188108.1|23986_24892_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476338.1|24949_25867_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476341.1|25923_26856_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186912.1|27257_27803_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|27908_28157_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163805.1|28264_29218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902122.1|29207_30587_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	3.8e-56
WP_000069314.1|30739_32194_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_031824588.1|32318_32435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|32595_33582_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681769.1|33696_34665_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|34741_35401_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000133950.1|36098_37274_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165533.1|37495_38806_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161746.1|38822_39821_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|39991_40264_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|40694_41267_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|41269_41995_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_016169114.1|42011_42956_+	heptaprenyl diphosphate synthase component II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|43047_43497_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|43705_43906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|44291_45458_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776326.1|45483_46548_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245900.1|46557_47856_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|47862_49107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005213.1|49120_49696_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|49685_50273_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|50344_51025_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839931.1|51361_51679_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|51919_53062_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_042909038.1|53066_54269_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.0	1.2e-34
WP_042909036.1|54255_55227_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525074.1|55250_57944_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858791.1|58265_59558_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000362220.1|59885_60572_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
>prophage 2
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	64311	64938	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|64311_64938_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 3
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	74263	75142	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_001133025.1|74263_75142_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.1	4.0e-19
>prophage 4
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	113580	122970	2746804		Staphylococcus_phage(60.0%)	12	NA	NA
WP_000282171.1|113580_114285_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|114529_114724_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|114735_114987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000995287.1|116164_116602_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|117025_117982_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|118181_118661_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|118675_119515_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159902.1|119600_120134_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913315.1|120126_120555_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473652.1|120566_121067_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|121066_121288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342125.1|121479_122970_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 5
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	126378	128390	2746804		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|126378_127038_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|127034_128390_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 6
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	134555	135347	2746804		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|134555_135347_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 7
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	138887	143918	2746804	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|138887_140024_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|140055_140685_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|140703_140973_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|141135_141444_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|141614_141815_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|142011_142413_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|142652_143918_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 8
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	151763	153365	2746804		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|151763_153365_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 9
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	158451	161904	2746804		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|158451_159303_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|159309_159951_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077563.1|160089_161904_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.1e-153
>prophage 10
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	165318	166020	2746804		Tupanvirus(100.0%)	1	NA	NA
WP_160188111.1|165318_166020_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	1.5e-13
>prophage 11
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	173538	175893	2746804		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153612.1|173538_174321_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	3.2e-28
WP_000173830.1|174322_175321_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	5.0e-34
WP_000604816.1|175326_175893_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 12
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	180211	181474	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000283014.1|180211_181474_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 13
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	191133	195527	2746804		Bacillus_phage(50.0%)	2	NA	NA
WP_001289581.1|191133_193536_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.7	2.5e-95
WP_001641474.1|193535_195527_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
>prophage 14
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	201465	203112	2746804		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|201465_203112_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 15
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	206781	207903	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691303.1|206781_207903_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 16
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	212052	217708	2746804		Phage_Wrath(25.0%)	7	NA	NA
WP_001208760.1|212052_212676_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
WP_000380729.1|213055_213919_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	5.3e-16
WP_031835013.1|213992_214097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042909127.1|214093_215071_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	8.8e-185
WP_001085655.1|215227_215497_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|215950_216100_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|216190_217708_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 17
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	227844	232120	2746804		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|227844_228378_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|228516_228705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|228817_229420_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670300.1|229416_230508_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603969.1|230511_231243_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|231211_232120_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 18
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	236090	236552	2746804	capsid	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001120914.1|236090_236552_-|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	46.0	3.8e-29
>prophage 19
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	239737	242767	2746804		Staphylococcus_phage(100.0%)	5	NA	NA
WP_000006110.1|239737_239923_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|240350_240461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|241161_241368_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_075111596.1|241664_241883_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	73.1	6.4e-19
WP_001793526.1|242569_242767_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 20
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	247843	248320	2746804		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|247843_248320_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 21
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	254262	260734	2746804		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|254262_255081_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|255545_256088_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516265.1|256093_258103_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	9.0e-59
WP_000073352.1|258115_260734_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 22
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	270148	271192	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|270148_271192_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 23
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	275393	280937	2746804		Bacillus_virus(33.33%)	4	NA	NA
WP_000664766.1|275393_276680_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089941.1|276679_277945_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|277975_278689_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072384908.1|278693_280937_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 24
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	286077	297891	2746804	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|286077_287049_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282305.1|287063_287981_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|288150_288501_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|288886_291004_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|291008_291326_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|291322_291607_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097462.1|291627_292803_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_042908984.1|292823_293291_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_016169070.1|293580_297891_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 25
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	302164	302935	2746804		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|302164_302935_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 26
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	307709	321380	2746804	tRNA,protease	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|307709_309113_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|309178_309724_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_042908985.1|309720_310617_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	1.8e-30
WP_000195254.1|311033_312341_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|312496_314572_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000593192.1|314745_315618_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672867.1|315790_317035_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|317062_318181_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110254.1|318407_319316_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.7	7.8e-18
WP_001020808.1|319337_320504_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176387.1|320612_321380_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 27
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	335106	337583	2746804		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|335106_335838_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|335953_336187_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|336848_337583_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 28
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	347953	349948	2746804		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|347953_349948_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 29
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	353095	354031	2746804	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|353095_354031_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 30
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	359036	361293	2746804		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|359036_360236_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|360451_360670_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368227.1|360669_361293_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	3.6e-22
>prophage 31
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	364607	365219	2746804		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|364607_365219_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 32
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	369186	373797	2746804		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|369186_370287_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|370288_371563_-	dihydroorotase	NA	NA	NA	NA	NA
WP_160188116.1|371580_372462_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	1.0e-30
WP_001178619.1|372489_373797_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 33
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	378260	381014	2746804	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384684.1|378260_381014_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 34
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	400598	400787	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245802.1|400598_400787_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 35
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	409701	414351	2746804		Staphylococcus_phage(100.0%)	6	NA	NA
WP_077448298.1|409701_409926_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	69.8	2.1e-17
WP_000765708.1|409882_410029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|410701_411661_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
WP_000231631.1|412137_412371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032816.1|412992_413178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669528.1|414000_414351_-	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	49.1	2.4e-20
>prophage 36
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	425818	430376	2746804		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|425818_426133_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249285.1|426305_428654_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	1.1e-15
WP_000161940.1|428663_430376_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
>prophage 37
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	435381	436440	2746804	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|435381_436440_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 38
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	448375	448858	2746804		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000401377.1|448375_448858_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 39
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	453773	454121	2746804		Streptococcus_phage(100.0%)	1	NA	NA
WP_000119686.1|453773_454121_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	34.9	2.4e-12
>prophage 40
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	470114	478494	2746804		Lactococcus_phage(20.0%)	7	NA	NA
WP_012816615.1|470114_470315_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	63.5	1.9e-17
WP_012816617.1|471012_471621_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.4	1.6e-19
WP_042909157.1|471747_472326_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001284654.1|472589_472970_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000733269.1|474822_475668_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.7	4.4e-31
WP_001791613.1|477212_477305_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000757568.1|477567_478494_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
>prophage 41
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	490011	491859	2746804		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|490011_491859_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 42
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	499994	508827	2746804		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|499994_501089_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|501101_501641_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|501784_502060_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|502227_503634_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863440.1|503637_504930_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|505020_505998_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|506001_507114_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668339.1|507284_507911_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957036.1|508275_508827_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 43
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	514942	519322	2746804		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|514942_515176_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040054.1|515412_517131_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|517133_517400_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|517553_518096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685073.1|518149_519322_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	2.4e-75
>prophage 44
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	522501	537261	2746804		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921973.1|522501_523902_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273252.1|523894_524701_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_042909151.1|524965_526213_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|526234_527713_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238664.1|527727_528294_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_042909150.1|528296_529325_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.0	1.2e-62
WP_000483713.1|529317_530802_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|530780_532970_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|532962_533634_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|533635_533899_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|533898_534603_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|534606_535731_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|535717_536200_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225837.1|536400_537261_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
>prophage 45
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	547603	551374	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_042909149.1|547603_551374_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.9	8.7e-55
>prophage 46
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	555040	556087	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_042909148.1|555040_556087_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.4e-16
>prophage 47
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	564392	568113	2746804		Enterococcus_phage(50.0%)	7	NA	NA
WP_001788574.1|564392_564683_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_020978112.1|564746_564878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081347.1|564923_565883_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|566370_566727_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792676.1|566815_566953_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_072361064.1|567093_567384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|567471_568113_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
>prophage 48
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	578307	583518	2746804	protease	Pithovirus(33.33%)	3	NA	NA
WP_078098579.1|578307_580632_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|580850_581654_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049951.1|581955_583518_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 49
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	602450	604259	2746804		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|602450_604259_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 50
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	610072	612042	2746804		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|610072_611053_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|611055_612042_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 51
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	615693	617707	2746804		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|615693_616635_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|616624_617707_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 52
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	626301	633112	2746804		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_042909139.1|626301_627447_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047066.1|627556_628426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353955.1|628484_631094_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044219.1|631297_633112_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	34.2	3.0e-37
>prophage 53
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	639368	643022	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_023913617.1|639368_643022_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
>prophage 54
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	653175	660221	2746804		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|653175_654105_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|654494_655739_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|655847_657038_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838029.1|657345_658473_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|658834_659212_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|659627_660221_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 55
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	670141	673769	2746804		Mycoplasma_phage(50.0%)	3	NA	NA
WP_042909197.1|670141_671617_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	35.2	9.0e-48
WP_000046076.1|671747_672956_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|673409_673769_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 56
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	677811	680480	2746804		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|677811_679026_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_042909198.1|679022_680480_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	2.2e-38
>prophage 57
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	693601	697124	2746804		environmental_halophage(50.0%)	3	NA	NA
WP_000807670.1|693601_694843_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205572.1|694957_696265_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|696362_697124_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 58
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	700621	701647	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|700621_701647_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 59
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	704699	709876	2746804		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|704699_705056_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001190695.1|705199_705520_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|705669_706209_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150013.1|706291_707008_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	2.3e-17
WP_000974460.1|707155_707578_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|707976_708471_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255557.1|708625_709243_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|709315_709876_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 60
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	713279	714523	2746804		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|713279_713480_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001792695.1|713836_714523_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 61
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	723724	732602	2746804		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757401.1|723724_724453_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	1.4e-17
WP_001057759.1|724644_724791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|724806_725130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085185.1|726451_726916_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_031836900.1|726937_729310_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	2.3e-93
WP_001165961.1|729343_730084_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|730199_730433_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|730499_730958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|731297_732602_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 62
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	741717	747587	2746804		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|741717_742305_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|742868_743813_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|743923_744919_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|744915_745827_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|746651_747587_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 63
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	752031	754878	2746804		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662681.1|752031_754878_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 64
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	758195	759035	2746804		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_042909100.1|758195_759035_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	43.1	2.0e-12
>prophage 65
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	765113	770826	2746804		Streptococcus_phage(66.67%)	5	NA	NA
WP_001641371.1|765113_766196_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	34.9	4.9e-43
WP_000686344.1|766559_767426_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|767569_768211_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258151.1|768382_769438_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|769755_770826_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 66
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	780107	803614	2746804		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616842.1|780107_780869_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_042909103.1|780865_781822_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_160188123.1|781808_782780_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	2.1e-138
WP_000499195.1|782818_782974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|783375_784347_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|784464_786570_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|786532_786931_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|787731_788598_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|788617_789118_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|789458_790964_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031835073.1|791041_791143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|791233_792151_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197275.1|792830_793373_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663026.1|793723_794782_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000180991.1|795021_796536_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589256.1|796528_797506_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000983677.1|797727_799509_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525103.1|799520_801404_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	6.7e-56
WP_000098285.1|801673_803614_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 67
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	806753	816599	2746804		Pandoravirus(12.5%)	12	NA	NA
WP_001217794.1|806753_807905_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
WP_160188124.1|807888_808482_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	2.0e-38
WP_000446724.1|808832_809501_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|809502_809922_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|809925_810639_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|810737_811322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093561.1|811601_812042_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|812383_812857_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|812831_813518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|813517_814573_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|814644_815628_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931243.1|815759_816599_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.9	1.9e-55
>prophage 68
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	828211	829585	2746804		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952035.1|828211_829585_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.8	3.0e-45
>prophage 69
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	834562	840842	2746804		Bacillus_phage(33.33%)	6	NA	NA
WP_000857622.1|834562_836236_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.4	4.5e-11
WP_000737187.1|836232_837864_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469890.1|838082_838958_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358495.1|839129_839813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148828.1|839815_840274_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|840275_840842_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
>prophage 70
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	847556	848030	2746804		Pandoravirus(100.0%)	1	NA	NA
WP_000833478.1|847556_848030_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	4.6e-14
>prophage 71
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	853293	854091	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000731647.1|853293_854091_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.9	4.2e-07
>prophage 72
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	858922	859684	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|858922_859684_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 73
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	864058	865102	2746804		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030770.1|864058_865102_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 74
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	871625	872423	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|871625_872423_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 75
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	875647	879606	2746804		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|875647_877375_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793046.1|877795_879091_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|879207_879606_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 76
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	886540	887284	2746804		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|886540_887284_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 77
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	898169	898730	2746804	integrase	Streptococcus_phage(100.0%)	1	892323:892337	902320:902334
892323:892337	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|898169_898730_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|898169_898730_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
902320:902334	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 78
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	911742	915096	2746804		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|911742_912753_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|913251_913773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180230.1|913800_915096_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	2.1e-24
>prophage 79
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	933202	934525	2746804		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860576.1|933202_934525_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.1	4.1e-108
>prophage 80
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	945826	946483	2746804		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|945826_946483_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 81
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	950124	953445	2746804		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100833.1|950124_951501_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.2	4.3e-20
WP_000347061.1|952044_953445_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 82
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	976783	977446	2746804		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067262.1|976783_977446_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 83
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	984023	985211	2746804		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250824.1|984023_985211_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	7.5e-45
>prophage 84
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	988239	999193	2746804		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|988239_990321_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|990443_990914_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|990979_991393_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|991490_991745_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|991881_995478_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|995641_999193_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 85
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1002876	1007656	2746804	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_160188130.1|1002876_1003422_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	5.0e-12
WP_001074473.1|1003434_1003617_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1003672_1003816_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872873.1|1003930_1004500_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664738.1|1004580_1005105_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1005104_1005851_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1005858_1006263_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631963.1|1006255_1007656_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 86
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1013667	1016124	2746804	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1013667_1016124_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 87
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1030382	1040654	2746804	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1030382_1031870_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_031835053.1|1031922_1032015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613716.1|1032408_1032885_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1032881_1033247_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167923.1|1033224_1034028_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	3.9e-21
WP_000057594.1|1034243_1035176_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1035354_1036236_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1036464_1038558_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1038814_1039354_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176726.1|1039358_1040654_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	8.2e-13
>prophage 88
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1049910	1052375	2746804		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1049910_1050876_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252530.1|1051022_1052375_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 89
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1058261	1061359	2746804	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051132.1|1058261_1060235_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	1.5e-93
WP_000279926.1|1060519_1061359_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 90
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1065265	1065883	2746804		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1065265_1065883_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 91
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1075364	1077062	2746804		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1075364_1077062_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 92
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1093712	1099950	2746804		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1093712_1094717_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825541.1|1095048_1095891_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467995.1|1095927_1096587_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569265.1|1096590_1097616_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.4e-31
WP_160188132.1|1097909_1099052_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634094.1|1099035_1099950_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.9	1.7e-49
>prophage 93
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1126036	1128755	2746804		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000066763.1|1126036_1127206_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	39.9	3.7e-52
WP_000028609.1|1127198_1128755_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	1.5e-287
>prophage 94
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1142358	1147808	2746804	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1142358_1142631_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041884.1|1143029_1143758_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	2.1e-29
WP_000551776.1|1144126_1144663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1144775_1146317_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1146341_1147808_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 95
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1156689	1158213	2746804		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930487.1|1156689_1158213_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
>prophage 96
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1164408	1172825	2746804	integrase	Staphylococcus_phage(60.0%)	11	1162374:1162388	1168862:1168876
1162374:1162388	attL	TTTAATGCAATAACA	NA	NA	NA	NA
WP_001808197.1|1164408_1164567_+|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	68.9	1.8e-10
WP_001817700.1|1164993_1165932_+	Abi family protein	NA	NA	NA	NA	NA
WP_000897044.1|1166197_1166440_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000934799.1|1166491_1166995_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1167015_1167312_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1167555_1167747_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1167832_1168930_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
1168862:1168876	attR	TGTTATTGCATTAAA	NA	NA	NA	NA
WP_000157349.1|1168941_1169145_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001077602.1|1169174_1170056_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001566903.1|1170212_1171058_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655703.1|1171721_1172825_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	29.0	1.3e-11
>prophage 97
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1182766	1183609	2746804		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209547.1|1182766_1183609_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.3	1.6e-12
>prophage 98
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1204879	1207614	2746804		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280836.1|1204879_1205902_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191951.1|1205879_1206824_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449059.1|1206813_1207614_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	6.8e-42
>prophage 99
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1225852	1226530	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1225852_1226530_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 100
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1247576	1252022	2746804		Mycobacterium_phage(100.0%)	1	NA	NA
WP_160188134.1|1247576_1252022_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.6	1.7e-28
>prophage 101
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1262607	1264269	2746804		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570076.1|1262607_1263267_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736795.1|1263318_1264269_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 102
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1273584	1275021	2746804		Pandoravirus(100.0%)	1	NA	NA
WP_000164006.1|1273584_1275021_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.4e-29
>prophage 103
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1278781	1283320	2746804		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1278781_1280521_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608819.1|1280780_1281455_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975346.1|1281598_1283320_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 104
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1293090	1294134	2746804		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645607.1|1293090_1294134_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	2.7e-14
>prophage 105
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1301349	1302879	2746804		Vibrio_phage(100.0%)	1	NA	NA
WP_000838211.1|1301349_1302879_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 106
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1311754	1313260	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008395.1|1311754_1313260_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 107
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1324336	1329695	2746804		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1324336_1326586_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1327173_1328142_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127982.1|1328138_1329695_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 108
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1339905	1341965	2746804		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818915.1|1339905_1341003_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166919.1|1341386_1341965_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
>prophage 109
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1350499	1352092	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000067364.1|1350499_1352092_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
>prophage 110
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1370806	1371991	2746804		Klosneuvirus(100.0%)	1	NA	NA
WP_001084436.1|1370806_1371991_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	9.2e-35
>prophage 111
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1376825	1387109	2746804		Tupanvirus(50.0%)	3	NA	NA
WP_001641296.1|1376825_1384001_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.2	5.9e-68
WP_000826862.1|1384447_1385698_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706138.1|1386083_1387109_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 112
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1390647	1393990	2746804		Bacillus_virus(50.0%)	4	NA	NA
WP_000590844.1|1390647_1391388_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	2.2e-39
WP_000171919.1|1391729_1392242_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1392419_1392623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013481.1|1393030_1393990_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 113
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1397331	1399816	2746804		Catovirus(50.0%)	2	NA	NA
WP_000723452.1|1397331_1398477_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	3.2e-24
WP_000779497.1|1398553_1399816_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	26.0	6.6e-23
>prophage 114
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1406833	1413398	2746804		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1406833_1407958_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028293.1|1407961_1409071_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1409083_1410112_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940796.1|1410101_1411925_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	4.0e-29
WP_000565293.1|1411944_1412709_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037328.1|1412711_1413398_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 115
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1417423	1418599	2746804		Clostridium_phage(100.0%)	1	NA	NA
WP_000469823.1|1417423_1418599_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	1.1e-29
>prophage 116
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1424057	1424831	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078090.1|1424057_1424831_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	2.9e-13
>prophage 117
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1432867	1433467	2746804		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1432867_1433467_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 118
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1438403	1443499	2746804		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1438403_1439384_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1439453_1439576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1439719_1440496_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414624.1|1440706_1441333_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1441528_1442293_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223709.1|1442296_1443499_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 119
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1451765	1455975	2746804		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1451765_1452746_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1452976_1453969_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924997.1|1453984_1454980_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136636.1|1454976_1455975_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	1.2e-14
>prophage 120
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1487957	1497967	2746804		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|1487957_1488758_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104166.1|1489153_1489942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|1489942_1491277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|1491269_1493096_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|1493108_1493810_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|1495005_1496289_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375644.1|1496566_1497967_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.4	2.4e-111
>prophage 121
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1504658	1515626	2746804	tRNA,transposase	Bacillus_virus(40.0%)	6	NA	NA
WP_000884334.1|1504658_1505945_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177462.1|1506323_1507838_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.5e-90
WP_000449218.1|1508163_1508976_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000277718.1|1509048_1510695_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
WP_000819086.1|1510985_1513655_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	1.6e-119
WP_000255578.1|1513691_1515626_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 122
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1525708	1528934	2746804		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|1525708_1526548_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|1526998_1527352_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779136.1|1527419_1527815_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054118.1|1528046_1528616_+	helix-turn-helix domain-containing protein	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|1528733_1528934_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 123
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1533232	1533991	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|1533232_1533991_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 124
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1546960	1548673	2746804		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138656.1|1546960_1548673_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 125
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1554301	1555315	2746804		Faustovirus(100.0%)	1	NA	NA
WP_000639186.1|1554301_1555315_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 126
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1567702	1568395	2746804		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185864.1|1567702_1568395_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.7e-28
>prophage 127
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1592696	1594556	2746804		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125611.1|1592696_1594556_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 128
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1620349	1622100	2746804		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143417.1|1620349_1621237_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|1621344_1622100_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 129
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1625520	1626018	2746804		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|1625520_1626018_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 130
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1631052	1633436	2746804		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|1631052_1632903_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173328.1|1632899_1633436_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.6	1.0e-41
>prophage 131
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1639281	1649396	2746804	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066517.1|1639281_1640991_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.2	1.9e-57
WP_000011688.1|1641268_1641481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000708240.1|1641760_1642204_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172340.1|1642397_1643996_+	acetyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_031835118.1|1644055_1644385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|1644680_1646177_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031406.1|1646371_1647262_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001641250.1|1647384_1647801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030064.1|1648058_1649396_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	3.0e-18
>prophage 132
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1677508	1681296	2746804		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751267.1|1677508_1678210_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	4.0e-38
WP_000996736.1|1678485_1678974_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379822.1|1679484_1681296_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 133
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1689729	1693585	2746804		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161366.1|1689729_1690728_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
WP_000076661.1|1690817_1691024_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024148.1|1691176_1693585_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.0	2.9e-128
>prophage 134
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1705264	1705786	2746804		Streptococcus_phage(100.0%)	1	NA	NA
WP_000455990.1|1705264_1705786_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	1.5e-26
>prophage 135
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1712206	1718575	2746804		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062658.1|1712206_1713946_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	2.7e-35
WP_000473675.1|1714246_1716313_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|1716677_1717088_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240662.1|1717129_1717474_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228169.1|1717606_1718575_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	5.2e-12
>prophage 136
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1728257	1729250	2746804		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|1728257_1729250_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 137
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1738529	1739225	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382903.1|1738529_1739225_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	8.8e-38
>prophage 138
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1758445	1759312	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000721337.1|1758445_1759312_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
>prophage 139
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1769802	1774536	2746804		Streptococcus_phage(100.0%)	3	NA	NA
WP_072414260.1|1769802_1771611_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	38.1	1.9e-95
WP_000446878.1|1771728_1773198_+	DNA mismatch repair protein MutH	NA	NA	NA	NA	NA
WP_001033636.1|1773297_1774536_+	DNA cytosine methyltransferase	NA	A0A141E0F9	Streptococcus_phage	29.5	8.4e-31
>prophage 140
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1783233	1783929	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000217449.1|1783233_1783929_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 141
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1796041	1797599	2746804		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173870.1|1796041_1796857_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	2.3e-13
WP_000590515.1|1796849_1797599_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 142
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1804733	1809162	2746804		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923529.1|1804733_1805396_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.3	1.1e-21
WP_000072147.1|1805388_1806165_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026194.1|1806560_1807748_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700926.1|1807809_1809162_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	33.3	2.8e-11
>prophage 143
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1812855	1814082	2746804		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948972.1|1812855_1814082_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 144
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1832438	1838691	2746804		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|1832438_1833581_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|1833838_1834225_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|1834358_1834466_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064836.1|1835169_1836933_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.9	5.0e-37
WP_000486496.1|1836957_1838691_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.5	2.0e-30
>prophage 145
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1842152	1847923	2746804		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971546.1|1842152_1843268_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	7.1e-21
WP_000286876.1|1843278_1843971_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200945.1|1843981_1844449_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000783428.1|1844500_1845478_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|1845479_1846427_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|1846993_1847923_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 146
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1855748	1856480	2746804		Bacillus_virus(100.0%)	1	NA	NA
WP_042909118.1|1855748_1856480_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 147
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1873134	1874694	2746804		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|1873134_1874694_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 148
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1896230	1897265	2746804		Bacillus_virus(100.0%)	1	NA	NA
WP_000655972.1|1896230_1897265_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 149
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1907116	1911013	2746804		Hokovirus(33.33%)	4	NA	NA
WP_000477329.1|1907116_1908490_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	1.3e-13
WP_000249497.1|1908482_1909157_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|1909292_1910348_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229911.1|1910347_1911013_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.2e-36
>prophage 150
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1914752	1915961	2746804		Salmonella_phage(100.0%)	1	NA	NA
WP_000999168.1|1914752_1915961_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.4	4.6e-34
>prophage 151
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1928082	1928982	2746804		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524837.1|1928082_1928982_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	4.2e-16
>prophage 152
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1936218	1938682	2746804	transposase	Staphylococcus_virus(50.0%)	2	NA	NA
WP_000277718.1|1936218_1937865_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
WP_000920237.1|1938262_1938682_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.1	1.3e-36
>prophage 153
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1944615	1945497	2746804		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|1944615_1945497_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 154
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1953375	1954011	2746804		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285449.1|1953375_1954011_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-09
>prophage 155
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1967575	1971545	2746804		Staphylococcus_phage(50.0%)	4	NA	NA
WP_072414261.1|1967575_1968214_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684140.1|1968524_1969649_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	4.2e-13
WP_000417016.1|1969729_1970683_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
WP_000737705.1|1971044_1971545_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 156
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1975462	1976272	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717388.1|1975462_1976272_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 157
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	1995249	1995855	2746804		Pithovirus(100.0%)	1	NA	NA
WP_000913019.1|1995249_1995855_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 158
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2007938	2011106	2746804		Leptospira_phage(100.0%)	1	NA	NA
WP_000592311.1|2007938_2011106_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	2.4e-61
>prophage 159
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2019359	2019845	2746804	transposase	Lactococcus_phage(100.0%)	1	NA	NA
WP_000093396.1|2019359_2019845_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	6.4e-19
>prophage 160
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2035308	2036975	2746804		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389676.1|2035308_2036118_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	9.7e-20
WP_000155386.1|2036114_2036975_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 161
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2040643	2046012	2746804		Yellowstone_lake_phycodnavirus(50.0%)	5	NA	NA
WP_160188146.1|2040643_2042308_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	1.4e-44
WP_000186134.1|2042344_2043049_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_001549607.1|2043412_2043838_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044363.1|2044131_2044947_+	hydrolase	NA	NA	NA	NA	NA
WP_001044432.1|2045157_2046012_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	41.4	3.4e-07
>prophage 162
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2049388	2052483	2746804		Staphylococcus_phage(50.0%)	5	NA	NA
WP_001015500.1|2049388_2050237_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_001549596.1|2050456_2050582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333465.1|2050843_2051452_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001791678.1|2051544_2051706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001566761.1|2051742_2052483_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.4	7.3e-14
>prophage 163
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2058803	2060216	2746804		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2058803_2060216_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 164
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2064184	2065747	2746804		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2064184_2065747_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 165
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2075949	2076918	2746804		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989089.1|2075949_2076918_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	3.0e-15
>prophage 166
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2092929	2093838	2746804		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2092929_2093838_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 167
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2097429	2104770	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001048275.1|2097429_2104770_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	27.9	8.2e-17
>prophage 168
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2109080	2111900	2746804		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2109080_2110886_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908174.1|2111117_2111900_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	1.3e-08
>prophage 169
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2115233	2116880	2746804	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_000277718.1|2115233_2116880_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
>prophage 170
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2125134	2128968	2746804		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2125134_2125578_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2125698_2126409_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083323.1|2126723_2127386_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242310.1|2127666_2128968_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	59.0	4.7e-133
>prophage 171
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2136906	2138517	2746804		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159965.1|2136906_2138517_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.8	1.6e-146
>prophage 172
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2146320	2154070	2746804		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2146320_2146920_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2146920_2147997_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248729.1|2147983_2148820_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_072419731.1|2148852_2149950_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000697334.1|2149946_2150366_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654182.1|2150472_2150997_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2151023_2152262_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2152289_2152919_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2152942_2154070_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 173
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2164473	2164869	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2164473_2164869_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 174
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2171147	2171795	2746804		Moumouvirus(100.0%)	1	NA	NA
WP_001187634.1|2171147_2171795_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	1.0e-08
>prophage 175
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2178995	2180516	2746804		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2178995_2180516_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 176
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2186204	2188232	2746804		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546597.1|2186204_2188232_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 177
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2193382	2196766	2746804		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2193382_2193745_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_160188147.1|2194093_2195095_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2195213_2195540_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2195541_2196021_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2195995_2196766_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 178
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2210705	2215429	2746804		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094582.1|2210705_2212235_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_000214552.1|2212264_2213269_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2213405_2213660_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_160188148.1|2213659_2215429_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.9	7.7e-62
>prophage 179
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2219189	2233628	2746804	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159034.1|2219189_2220215_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	6.9e-63
WP_000106330.1|2220316_2221927_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
WP_001790685.1|2222607_2222736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602074.1|2222879_2224808_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	2.4e-53
WP_001283612.1|2225060_2225696_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2226050_2227079_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581075.1|2227138_2227363_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052269.1|2227570_2228821_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	1.3e-39
WP_000790329.1|2229003_2229954_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141411.1|2230102_2231587_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.6	8.8e-19
WP_001253291.1|2231583_2232543_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688498.1|2232911_2233628_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	3.0e-25
>prophage 180
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2240771	2242748	2746804		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2240771_2241056_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2241131_2242748_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 181
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2248598	2254277	2746804		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000791411.1|2248598_2249654_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2249675_2250692_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000727643.1|2251991_2252441_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000702262.1|2253123_2253474_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2253526_2253787_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2254097_2254277_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 182
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2260246	2262693	2746804		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991302.1|2260246_2261143_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2261143_2261824_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2261820_2262693_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 183
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2268457	2268859	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|2268457_2268859_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 184
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2273057	2275087	2746804		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|2273057_2273618_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275706.1|2273989_2275087_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
>prophage 185
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2279117	2281401	2746804		Bacillus_virus(100.0%)	2	NA	NA
WP_000284433.1|2279117_2280587_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000040866.1|2280579_2281401_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 186
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2285102	2291869	2746804		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|2285102_2286398_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|2286506_2286809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272071.1|2286980_2287673_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|2287669_2289862_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774565.1|2289865_2291869_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
>prophage 187
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2298987	2304016	2746804		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|2298987_2299935_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147870.1|2300015_2301377_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	4.8e-104
WP_000548781.1|2301546_2302077_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|2302323_2303394_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613733.1|2303461_2304016_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	36.3	9.2e-30
>prophage 188
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2307467	2307881	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160188160.1|2307467_2307881_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.1	3.9e-17
>prophage 189
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2329046	2330783	2746804		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|2329046_2330783_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 190
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2347394	2395033	2746804	tRNA,protease	Staphylococcus_phage(82.35%)	47	NA	NA
WP_001144055.1|2347394_2348123_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001792805.1|2348258_2349401_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|2349405_2349876_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2350033_2350633_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2350657_2350810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2351936_2352332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2352527_2353913_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2354373_2355195_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437961.1|2355357_2356470_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2356491_2357115_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2357470_2357935_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992516.1|2358113_2359238_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2359306_2359651_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|2360143_2360242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2360532_2361729_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584628.1|2361718_2364655_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244171.1|2364651_2365593_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2365713_2366676_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2366880_2367438_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2368170_2368536_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004988.1|2368677_2369100_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|2369233_2369974_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551840.1|2369966_2371190_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|2371313_2371817_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|2371979_2372090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2372079_2373117_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2373174_2374098_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167554.1|2374121_2375522_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2375843_2376398_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206349.1|2378780_2379569_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.0e-138
WP_001086053.1|2379581_2380037_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
WP_000473596.1|2380930_2381866_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|2381867_2382851_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543848.1|2383220_2384012_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550254.1|2384016_2384490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025174387.1|2384745_2384964_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	9.2e-26
WP_001092783.1|2385435_2386005_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_025174851.1|2386968_2387676_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001039455.1|2387800_2388523_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_001038866.1|2388580_2389300_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001038723.1|2389420_2390140_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_103150108.1|2390088_2390196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038760.1|2390297_2391014_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_001038693.1|2391164_2391884_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_031835054.1|2391950_2392085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028658.1|2392248_2393805_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_000072556.1|2393797_2395033_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
>prophage 191
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2404224	2453306	2746804	tRNA,protease	Staphylococcus_phage(94.74%)	45	NA	NA
WP_000864136.1|2404224_2404782_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000414214.1|2404979_2405552_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000627537.1|2405652_2405994_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000669027.1|2406034_2406661_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000070655.1|2406736_2407732_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_001795535.1|2407812_2408463_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_072414246.1|2408765_2409221_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_000348365.1|2409379_2410858_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778538.1|2410862_2411864_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000718107.1|2411860_2412118_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|2412183_2412657_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_001834463.1|2412661_2413408_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|2413785_2415378_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2415749_2416943_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366155.1|2417067_2417976_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453317.1|2418187_2419021_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000623471.1|2421118_2421472_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|2421468_2421834_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2422089_2422392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2422651_2423365_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2423804_2424440_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|2424735_2425179_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153745.1|2425165_2425609_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|2425721_2426192_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|2426390_2426615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2426890_2427745_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163236.1|2428039_2428435_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_000989121.1|2428452_2429745_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2429744_2430059_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261679.1|2430581_2432084_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384181.1|2432576_2433608_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_000493886.1|2433614_2434247_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001175484.1|2434257_2435439_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_001008551.1|2435451_2435916_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_160188150.1|2436037_2437039_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	5.0e-183
WP_001790712.1|2437150_2437270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|2437272_2438100_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|2438671_2439073_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|2439192_2439756_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2439752_2440706_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2440815_2441997_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108730.1|2442287_2444702_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836465.1|2444723_2445035_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001641584.1|2445360_2451921_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	1.3e-300
WP_000285017.1|2452037_2453306_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	5.3e-57
>prophage 192
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2464853	2470181	2746804		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|2464853_2465711_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|2465739_2466336_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118282.1|2466356_2470181_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.0e-83
>prophage 193
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2478927	2480634	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862095.1|2478927_2480634_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 194
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2487249	2489880	2746804	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186042.1|2487249_2488512_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279346.1|2488605_2489880_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 195
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2493649	2497784	2746804		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808837.1|2493649_2495254_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291419.1|2495240_2496401_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553927.1|2496514_2496961_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174285.1|2497040_2497784_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 196
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2515656	2518854	2746804		Streptomyces_phage(100.0%)	1	NA	NA
WP_160188152.1|2515656_2518854_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	2.9e-136
>prophage 197
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2523787	2525545	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|2523787_2525545_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 198
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2530429	2538593	2746804		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080029.1|2530429_2531134_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|2531133_2532795_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849439.1|2533293_2534781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038307.1|2535074_2537705_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	8.0e-47
WP_001114452.1|2537720_2538593_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
>prophage 199
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2542508	2553662	2746804	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|2542508_2543429_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|2543521_2543644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|2543842_2545780_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|2546205_2547699_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|2547927_2548455_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|2548483_2548684_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|2548730_2549087_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032656.1|2549228_2549837_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	1.5e-20
WP_001280022.1|2549855_2550785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|2550789_2550900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|2550947_2552249_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|2552399_2553662_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 200
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2563229	2565860	2746804	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425364.1|2563229_2565860_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	6.3e-153
>prophage 201
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2576321	2611819	2746804	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005769.1|2576321_2577326_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_160188153.1|2577327_2578353_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2578375_2579515_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2579533_2579794_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749789.1|2580068_2582348_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2582550_2584824_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2584845_2585364_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058583.1|2585791_2587981_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|2587992_2588445_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|2588441_2589317_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|2589777_2591040_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|2591055_2592822_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001808243.1|2593154_2593283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|2593282_2594056_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|2594216_2595491_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|2595575_2595998_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|2596097_2596280_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|2596319_2596466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985872.1|2596702_2597716_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_160188154.1|2598027_2599170_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	3.7e-33
WP_000066097.1|2599170_2600289_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567029.1|2600868_2601537_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283315.1|2601538_2604016_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734070.1|2604358_2606989_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|2607051_2607312_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|2607315_2607744_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|2607758_2608067_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|2608351_2608990_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|2608992_2609916_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|2609927_2611196_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|2611195_2611819_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 202
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2618768	2619533	2746804		Staphylococcus_phage(100.0%)	1	NA	NA
WP_029642895.1|2618768_2619533_+	enterotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.8	9.4e-49
>prophage 203
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2626802	2632966	2746804		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|2626802_2627264_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953313.1|2627322_2629470_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282562.1|2629526_2630501_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|2630545_2630797_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|2631142_2632966_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 204
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2636400	2639508	2746804		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|2636400_2638233_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|2638368_2639508_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 205
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2645977	2646925	2746804		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|2645977_2646925_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 206
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2649979	2663725	2746804	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|2649979_2651371_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001794939.1|2651705_2652329_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|2652339_2653158_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217252.1|2653218_2655036_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|2655259_2656366_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624583.1|2656496_2657174_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683933.1|2657176_2658277_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062183.1|2658390_2659737_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000924220.1|2659746_2660637_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|2660762_2661548_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|2661589_2662453_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|2662439_2662850_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|2663125_2663725_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 207
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2669898	2672463	2746804	transposase	Streptococcus_phage(50.0%)	2	NA	NA
WP_001223008.1|2669898_2670522_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
WP_000277718.1|2670816_2672463_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
>prophage 208
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2677980	2680792	2746804		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019689.1|2677980_2679327_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.9	5.7e-65
WP_000202189.1|2679319_2680792_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	6.2e-81
>prophage 209
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2688292	2694863	2746804		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|2688292_2689630_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|2689622_2689853_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183371.1|2689830_2690712_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.1	1.2e-10
WP_001124985.1|2691143_2691596_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942211.1|2691611_2693291_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|2693441_2694863_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 210
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2701693	2703100	2746804		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|2701693_2703100_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 211
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2709526	2711011	2746804		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|2709526_2711011_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 212
NZ_CP047780	Staphylococcus aureus strain UP_1539 chromosome, complete genome	2746804	2716677	2746485	2746804	terminase,integrase	Staphylococcus_phage(70.45%)	48	2717344:2717359	2740227:2740242
WP_000447733.1|2716677_2717565_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
2717344:2717359	attL	AAAATGATTAAACAAA	NA	NA	NA	NA
WP_001183429.1|2717642_2718149_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|2718240_2718972_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368654.1|2718964_2719507_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_160188156.1|2719499_2720237_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|2720369_2721095_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|2721075_2722827_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001641538.1|2723071_2723980_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_160188157.1|2724131_2726018_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	95.8	2.3e-112
WP_000264751.1|2726060_2727266_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|2727391_2728006_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001794606.1|2728002_2728149_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	97.9	2.6e-16
WP_000705240.1|2728185_2728368_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000511090.1|2728438_2729170_-	helix-turn-helix transcriptional regulator	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
WP_000213811.1|2729321_2729534_+	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_000435357.1|2729581_2730025_+	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
WP_000362644.1|2730229_2730442_-	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_001148860.1|2730511_2730709_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000773059.1|2730695_2731076_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_001025401.1|2731142_2731388_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|2731356_2731722_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_160188158.1|2731776_2731992_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	98.6	5.5e-31
WP_001124160.1|2732016_2732280_+	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001285954.1|2732292_2732454_+	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_000175000.1|2732532_2732856_+	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_000985986.1|2732870_2733233_+	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
WP_000762547.1|2733229_2734396_+	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	100.0	8.3e-222
WP_000645042.1|2734421_2734979_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001796208.1|2735047_2737000_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_031794998.1|2737012_2737174_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	9.1e-23
WP_000113981.1|2737197_2737599_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_000111488.1|2737598_2737856_+	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000235381.1|2737858_2738059_+	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000178883.1|2738067_2738316_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	100.0	3.6e-42
WP_111011822.1|2738487_2738742_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	98.8	4.2e-38
WP_072466723.1|2738704_2738899_+	hypothetical protein	NA	A1KX84	Staphylococcus_virus	98.4	1.6e-26
WP_015984517.1|2738891_2739428_+	hypothetical protein	NA	A1KX85	Staphylococcus_virus	100.0	4.6e-95
WP_015984518.1|2739464_2739659_+	DUF1381 domain-containing protein	NA	A1KX86	Staphylococcus_virus	100.0	7.4e-27
WP_015984519.1|2739658_2740183_+	hypothetical protein	NA	A1KX87	Staphylococcus_virus	100.0	9.2e-80
WP_000595260.1|2740229_2740382_+	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
2740227:2740242	attR	AAAATGATTAAACAAA	NA	NA	NA	NA
WP_000265251.1|2740449_2740650_+	DUF1514 domain-containing protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
WP_153166028.1|2742093_2743149_+	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	99.7	1.0e-207
WP_015978074.1|2743251_2743356_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665205.1|2743489_2743780_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_078160552.1|2743760_2745128_+	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	98.2	4.7e-261
WP_000513700.1|2745140_2745578_+	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	99.3	7.9e-77
WP_000196700.1|2745739_2746054_+	HNH endonuclease	NA	A0A2I6PDR3	Staphylococcus_phage	100.0	8.5e-57
WP_000778930.1|2746179_2746485_+|terminase	terminase	terminase	A0A2I6PDN6	Staphylococcus_phage	100.0	3.7e-49
