The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	707941	715761	2734199		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|707941_708997_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|708996_709683_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|709657_710131_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|710472_710913_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|711192_711777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|711875_712589_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|712592_713012_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|713013_713682_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|714032_714626_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217797.1|714609_715761_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	727742	742195	2734199		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663039.1|727742_728801_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|728959_729502_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|730109_731027_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|731119_731221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|731298_732804_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|733143_733644_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|733663_734530_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|735329_735728_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|735690_737796_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562499.1|737913_738885_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.0	2.7e-170
WP_000499195.1|739328_739484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|739522_740494_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245572.1|740480_741437_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|741433_742195_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	822494	843996	2734199	terminase,integrase,coat	Staphylococcus_phage(77.78%)	33	821073:821094	841464:841485
821073:821094	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|822494_823520_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|823512_824208_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|824225_825047_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|825189_826410_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|826498_827227_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033316.1|827250_827979_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_001228759.1|828048_828480_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|828496_828955_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|828966_829299_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|829491_829755_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|829747_830020_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|830031_830178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|830170_830380_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|830382_830703_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|830766_831636_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|831652_833122_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|833407_833770_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|833771_834056_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|834052_834694_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|835210_835552_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|835563_836142_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|836159_836378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|836428_836956_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|837087_837300_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|837296_837866_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|838173_838974_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|839051_839609_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|839982_840135_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|840205_840316_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|840302_840503_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|841626_841821_+	CsbD family protein	NA	NA	NA	NA	NA
841464:841485	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|842054_842906_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|843234_843996_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	932397	976115	2734199	protease,transposase,tRNA,holin,bacteriocin	Streptococcus_phage(33.33%)	39	NA	NA
WP_000277723.1|932397_934044_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_000448937.1|934069_935059_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|935353_935749_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|936119_936839_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|936959_937946_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|937993_939802_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|940261_941068_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|941090_941456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|941559_942153_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|942338_942686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|942702_943338_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|943354_944164_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|944160_945015_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|945035_946421_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|946430_948275_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933194.1|948553_949324_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|949520_950606_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|950947_952516_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_020977136.1|952658_953417_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|953582_954308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|954309_955161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|955895_956405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001824107.1|956517_957726_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|957685_958861_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|959293_960778_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|960758_961019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|961018_962581_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|962882_963686_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|963901_966226_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|966242_967601_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|967739_969251_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|969739_970309_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|970518_970737_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|970817_971804_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|972002_972179_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|972193_972796_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_057504515.1|973191_974838_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.6	9.7e-293
WP_099112139.1|975121_975199_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_029656376.1|975848_976115_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1010272	1018745	2734199		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1010272_1010755_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1010741_1011866_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1011869_1012574_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1012573_1012837_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1012838_1013510_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_160190975.1|1013502_1015692_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.5	3.9e-140
WP_000483727.1|1015670_1017155_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030818.1|1017147_1018176_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1018178_1018745_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1272380	1312816	2734199	capsid,integrase,transposase,tRNA,bacteriocin,head	Staphylococcus_phage(52.63%)	51	1272702:1272719	1315724:1315741
WP_001813266.1|1272380_1273316_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
1272702:1272719	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000561359.1|1273330_1273564_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448084.1|1273785_1274262_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	37.3	7.9e-22
WP_000068613.1|1274373_1275612_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652045.1|1275630_1276872_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1277112_1277481_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1277499_1278840_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001659797.1|1279332_1279530_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1280219_1280444_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1280739_1280946_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001635412.1|1281269_1281776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001628952.1|1281772_1282207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691527.1|1283379_1284072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001004925.1|1284181_1284376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000616816.1|1285492_1286110_+	cadmium resistance transporter CadD	NA	NA	NA	NA	NA
WP_000119690.1|1286128_1286476_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
WP_001791613.1|1286632_1286725_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000481279.1|1286896_1287868_-	oxidoreductase	NA	NA	NA	NA	NA
WP_000418035.1|1287991_1288411_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000733287.1|1288936_1289782_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000182645.1|1291634_1292015_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_031928561.1|1292278_1292872_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.5e-41
WP_000790712.1|1292843_1294286_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_078061227.1|1294368_1295037_+	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	29.3	6.3e-09
WP_000120603.1|1295097_1295412_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	3.6e-39
WP_000153631.1|1295411_1296701_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.6	2.3e-188
WP_000358995.1|1296718_1297114_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|1297493_1297787_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713731.1|1297861_1299796_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|1299799_1300111_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593103.1|1300122_1300749_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	8.0e-22
WP_001582042.1|1300986_1301364_+	recombinase	NA	NA	NA	NA	NA
WP_001582045.1|1301303_1301630_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|1301696_1302197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|1302559_1303420_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|1303506_1303848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|1304062_1304158_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000466617.1|1304306_1304492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000843732.1|1304707_1305451_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001066124.1|1305780_1306542_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1306534_1307827_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000006110.1|1308160_1308346_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1308857_1308962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1309088_1309340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1309813_1310068_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1310067_1310262_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
WP_031786973.1|1310322_1310451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000440735.1|1310417_1310696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078097461.1|1311213_1311864_+|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	54.2	1.7e-59
WP_001217295.1|1311874_1312069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064137920.1|1312147_1312816_+|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.7	1.5e-29
1315724:1315741	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 7
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1582953	1591265	2734199	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213910.1|1582953_1583739_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	6.1e-19
WP_000924210.1|1583864_1584755_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1584764_1586111_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1586224_1587325_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1587327_1588005_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1588135_1589242_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1589465_1591265_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1661795	1670838	2734199	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1661795_1662314_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1662335_1664609_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1664811_1667091_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1667365_1667626_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1667644_1668784_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1668806_1669832_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1669833_1670838_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1808027	1842745	2734199	protease	Staphylococcus_phage(93.75%)	40	NA	NA
WP_000526539.1|1808027_1808981_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764430.1|1808977_1809541_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	3.5e-101
WP_000757543.1|1809660_1810062_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1810633_1811461_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1811463_1811583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1811694_1812696_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1812817_1813282_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1813294_1814476_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493883.1|1814486_1815119_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000384177.1|1815125_1816157_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_001261664.1|1816649_1818152_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1818673_1818988_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1818987_1820280_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1820297_1820690_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1821094_1821949_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384171.1|1822224_1822449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671047.1|1822647_1823118_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	4.4e-81
WP_001153740.1|1823230_1823674_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030470.1|1823660_1824104_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_025175276.1|1824401_1825037_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1825203_1825824_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1826292_1827006_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1827263_1827566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1827821_1828187_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1828183_1828537_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1828786_1829620_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1829831_1830740_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1830864_1832058_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1832429_1834022_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1834315_1835062_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1835066_1835540_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1835605_1835863_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778517.1|1835859_1836861_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.1e-185
WP_000348384.1|1836865_1838344_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_078065177.1|1838503_1838959_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_001838615.1|1839261_1839912_+	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_000070638.1|1839992_1840988_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1841063_1841690_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1841730_1842072_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1842172_1842745_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 10
NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2734199	1848299	1856614	2734199	transposase	Staphylococcus_phage(70.0%)	10	NA	NA
WP_001044434.1|1848299_1849154_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1849404_1849950_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1850366_1850546_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1850856_1851117_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1851169_1851520_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1852204_1852654_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_150527720.1|1852748_1853207_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.0	1.4e-84
WP_001066124.1|1853385_1854147_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1854139_1855432_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000206347.1|1855825_1856614_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
