assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	1	612904-613011	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA,NA|169aa|down_5|NZ_CP047783.1_617657_618164_+,NA|239aa|down_6|NZ_CP047783.1_618325_619042_+	NA|466aa|up_9|NZ_CP047783.1_601721_603119_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|207aa|up_8|NZ_CP047783.1_603143_603764_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_7|NZ_CP047783.1_604692_605631_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_6|NZ_CP047783.1_605840_606377_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_5|NZ_CP047783.1_606546_607023_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_4|NZ_CP047783.1_607062_608358_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_3|NZ_CP047783.1_608385_608907_+	pfam08741, YwhD, YwhD family	NA|337aa|up_2|NZ_CP047783.1_609405_610416_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_1|NZ_CP047783.1_610723_611107_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_0|NZ_CP047783.1_611103_612765_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|down_0|NZ_CP047783.1_613030_613666_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_1|NZ_CP047783.1_614035_614863_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_2|NZ_CP047783.1_615013_615964_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_3|NZ_CP047783.1_616018_616738_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_4|NZ_CP047783.1_616721_617522_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_5|NZ_CP047783.1_617657_618164_+	NA	NA|239aa|down_6|NZ_CP047783.1_618325_619042_+	NA	NA|263aa|down_7|NZ_CP047783.1_619210_619999_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_8|NZ_CP047783.1_620251_620626_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_9|NZ_CP047783.1_621573_622503_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	2	729591-729676	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	729619-729648	NZ_CP047783.1_770627-770598	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|69aa|up_9|NZ_CP047783.1_716434_716641_+,NA|34aa|down_1|NZ_CP047783.1_731119_731221_+,NA|52aa|down_8|NZ_CP047783.1_739328_739484_+	NA|69aa|up_9|NZ_CP047783.1_716434_716641_+	NA	NA|237aa|up_8|NZ_CP047783.1_716737_717448_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP047783.1_717431_718436_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP047783.1_718909_720850_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP047783.1_721120_723004_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP047783.1_723015_724797_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP047783.1_725018_725996_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP047783.1_725988_727503_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP047783.1_727742_728801_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP047783.1_728959_729502_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP047783.1_730109_731027_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP047783.1_731119_731221_+	NA	NA|502aa|down_2|NZ_CP047783.1_731298_732804_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP047783.1_733143_733644_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP047783.1_733663_734530_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP047783.1_735329_735728_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP047783.1_735690_737796_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP047783.1_737913_738885_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP047783.1_739328_739484_+	NA	NA|324aa|down_9|NZ_CP047783.1_739522_740494_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	3	906576-906733	1,3	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	9	906683-906701|906683-906701|906683-906701|906683-906701|906683-906701|906683-906701|906683-906701|906683-906701|906683-906701	NZ_CP047783.1_775943-775961|NZ_CP047783.1_1249238-1249256|NZ_CP047783.1_1249296-1249314|NZ_CP047783.1_1926466-1926484|NZ_CP047783.1_138755-138773|NZ_CP047783.1_579809-579791|NZ_CP047783.1_886410-886392|NZ_CP047783.1_1107962-1107944|NZ_CP047783.1_1349855-1349873	NA:NA	2,1	2	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA,NA	NA|192aa|up_9|NZ_CP047783.1_893014_893590_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP047783.1_893594_894119_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP047783.1_894134_894710_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP047783.1_894869_898346_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP047783.1_898346_902000_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP047783.1_902165_903068_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP047783.1_903395_903785_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP047783.1_903956_905273_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP047783.1_905324_906149_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP047783.1_906262_906571_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP047783.1_907224_909039_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP047783.1_909241_911851_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP047783.1_911909_912779_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP047783.1_912888_914034_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP047783.1_914017_914659_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NZ_CP047783.1_915753_916269_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NZ_CP047783.1_916579_917014_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NZ_CP047783.1_917270_917456_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NZ_CP047783.1_917750_918692_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NZ_CP047783.1_918703_919948_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	4	1025044-1025136	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA,NA|45aa|down_0|NZ_CP047783.1_1025145_1025280_-,NA|432aa|down_1|NZ_CP047783.1_1025431_1026727_+	NA|224aa|up_9|NZ_CP047783.1_1012838_1013510_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP047783.1_1013502_1015692_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP047783.1_1015670_1017155_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP047783.1_1017147_1018176_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP047783.1_1018178_1018745_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP047783.1_1018759_1020238_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP047783.1_1020259_1021507_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP047783.1_1021772_1022579_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP047783.1_1022571_1023972_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP047783.1_1023986_1024562_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP047783.1_1025145_1025280_-	NA	NA|432aa|down_1|NZ_CP047783.1_1025431_1026727_+	NA	NA|391aa|down_2|NZ_CP047783.1_1027151_1028324_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP047783.1_1028377_1028920_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP047783.1_1029073_1029340_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP047783.1_1029342_1031061_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP047783.1_1031297_1031531_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP047783.1_1031728_1033090_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP047783.1_1033086_1034106_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP047783.1_1034238_1034901_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	5	1186504-1186596	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP047783.1_1176378_1177023_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047783.1_1177029_1177671_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047783.1_1178052_1178241_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047783.1_1178683_1179058_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047783.1_1179072_1180719_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047783.1_1180908_1182969_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047783.1_1183170_1183743_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047783.1_1183747_1184734_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047783.1_1184726_1185653_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047783.1_1185645_1186380_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047783.1_1186685_1186919_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047783.1_1187034_1187766_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047783.1_1187912_1191479_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047783.1_1191478_1192729_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047783.1_1192715_1193048_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047783.1_1193073_1194441_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047783.1_1194786_1195062_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047783.1_1195249_1195753_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047783.1_1195752_1196490_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047783.1_1196592_1196943_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	6	1420567-1420646	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|68aa|up_5|NZ_CP047783.1_1412047_1412251_-,NA	NA|379aa|up_9|NZ_CP047783.1_1406397_1407534_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_CP047783.1_1407607_1408951_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_CP047783.1_1409175_1411062_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_CP047783.1_1411075_1411867_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_CP047783.1_1412047_1412251_-	NA	NA|270aa|up_4|NZ_CP047783.1_1412279_1413089_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NZ_CP047783.1_1413668_1414937_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_CP047783.1_1414950_1417749_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_CP047783.1_1418037_1419393_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP047783.1_1419389_1420049_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NZ_CP047783.1_1421190_1421805_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NZ_CP047783.1_1421821_1422892_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NZ_CP047783.1_1422903_1423413_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NZ_CP047783.1_1423812_1425303_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NZ_CP047783.1_1425494_1425716_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NZ_CP047783.1_1425715_1426216_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NZ_CP047783.1_1426227_1426656_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NZ_CP047783.1_1426648_1427182_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NZ_CP047783.1_1427271_1428111_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NZ_CP047783.1_1428125_1428605_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	7	1925013-1925094	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,DinG,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|92aa|up_6|NZ_CP047783.1_1919210_1919486_+,NA|129aa|up_1|NZ_CP047783.1_1923468_1923855_-,NA|138aa|down_1|NZ_CP047783.1_1926777_1927191_-,NA|37aa|down_2|NZ_CP047783.1_1927219_1927330_-,NA|31aa|down_6|NZ_CP047783.1_1930335_1930428_-	NA|419aa|up_9|NZ_CP047783.1_1917133_1918390_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP047783.1_1918392_1918593_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP047783.1_1918739_1919204_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP047783.1_1919210_1919486_+	NA	NA|406aa|up_5|NZ_CP047783.1_1919763_1920981_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP047783.1_1921093_1921723_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP047783.1_1921712_1922756_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP047783.1_1922752_1923454_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP047783.1_1923468_1923855_-	NA	NA|253aa|up_0|NZ_CP047783.1_1924071_1924830_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP047783.1_1925358_1926345_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP047783.1_1926777_1927191_-	NA	NA|37aa|down_2|NZ_CP047783.1_1927219_1927330_-	NA	NA|244aa|down_3|NZ_CP047783.1_1927415_1928147_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP047783.1_1928148_1929462_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP047783.1_1929753_1930254_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP047783.1_1930335_1930428_-	NA	DEDDh|185aa|down_7|NZ_CP047783.1_1930644_1931199_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP047783.1_1931265_1932336_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP047783.1_1932582_1933113_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	8	1984728-1984813	8	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|59aa|up_6|NZ_CP047783.1_1974868_1975045_-,NA|33aa|up_5|NZ_CP047783.1_1975286_1975385_-,NA	NA|227aa|up_9|NZ_CP047783.1_1972373_1973054_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|NZ_CP047783.1_1973054_1973951_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|NZ_CP047783.1_1973947_1974328_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|NZ_CP047783.1_1974868_1975045_-	NA	NA|33aa|up_5|NZ_CP047783.1_1975286_1975385_-	NA	NA|429aa|up_4|NZ_CP047783.1_1975584_1976871_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_3|NZ_CP047783.1_1979275_1980268_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NZ_CP047783.1_1980760_1981777_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP047783.1_1981798_1982854_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP047783.1_1983289_1984513_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP047783.1_1984953_1986261_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NZ_CP047783.1_1986801_1988418_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP047783.1_1988493_1988778_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP047783.1_1988952_1989696_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NZ_CP047783.1_1989720_1990920_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP047783.1_1991116_1991743_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP047783.1_1992103_1992889_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP047783.1_1993487_1993622_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NZ_CP047783.1_1993857_1994427_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP047783.1_1994423_1994564_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	9	2232930-2233014	9	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	4	2232960-2232984|2232960-2232984|2232960-2232984|2232960-2232984	NZ_CP047783.1_1112105-1112081|NZ_CP047783.1_1820945-1820969|NZ_CP047783.1_2233016-2233040|NZ_CP047783.1_1112049-1112025	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|55aa|up_9|NZ_CP047783.1_2223437_2223602_+,NA|106aa|up_8|NZ_CP047783.1_2223846_2224164_+,NA|84aa|up_5|NZ_CP047783.1_2229288_2229540_+,NA|57aa|up_0|NZ_CP047783.1_2232680_2232851_+,NA	NA|55aa|up_9|NZ_CP047783.1_2223437_2223602_+	NA	NA|106aa|up_8|NZ_CP047783.1_2223846_2224164_+	NA	NA|1056aa|up_7|NZ_CP047783.1_2224350_2227518_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047783.1_2227634_2228900_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047783.1_2229288_2229540_+	NA	NA|255aa|up_4|NZ_CP047783.1_2229531_2230296_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047783.1_2230458_2230899_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047783.1_2230891_2232103_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047783.1_2232204_2232555_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047783.1_2232680_2232851_+	NA	NA|341aa|down_0|NZ_CP047783.1_2233191_2234214_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047783.1_2234233_2234833_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047783.1_2234839_2235073_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047783.1_2235078_2235525_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047783.1_2235538_2236024_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047783.1_2236020_2237280_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047783.1_2237342_2237837_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047783.1_2237838_2238345_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047783.1_2238375_2239380_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047783.1_2239548_2240154_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009912335.1_ASM991233v1	NZ_CP047783	Staphylococcus aureus strain UP_1313 chromosome, complete genome	10	2386642-2386734	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL	NA|35aa|up_2|NZ_CP047783.1_2384295_2384400_+,NA|32aa|down_0|NZ_CP047783.1_2386938_2387034_-	NA|200aa|up_9|NZ_CP047783.1_2377772_2378372_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP047783.1_2378390_2378753_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP047783.1_2379007_2380258_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP047783.1_2380354_2381086_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP047783.1_2381082_2381802_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP047783.1_2381782_2382562_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP047783.1_2382682_2384122_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP047783.1_2384295_2384400_+	NA	NA|229aa|up_1|NZ_CP047783.1_2384553_2385240_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP047783.1_2385565_2386432_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NZ_CP047783.1_2386938_2387034_-	NA	NA|437aa|down_1|NZ_CP047783.1_2387128_2388439_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP047783.1_2388930_2389860_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP047783.1_2390427_2391375_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP047783.1_2391376_2392354_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP047783.1_2392405_2392873_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP047783.1_2392883_2393576_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP047783.1_2393586_2394702_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP047783.1_2394679_2395687_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP047783.1_2395688_2397047_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
