assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	1	71371-71562	1	CRT	no	DEDDh	DEDDh,cas3,DinG,csa3,WYL	Unclear	GGTGGGGCCCNCAACANAGANN	22	1	8	71450-71483|71450-71483|71450-71483|71450-71483|71450-71483|71450-71483|71450-71483|71450-71483	NZ_CP047781.1_325245-325212|NZ_CP047781.1_1064211-1064244|NZ_CP047781.1_1380605-1380638|NZ_CP047781.1_1413842-1413809|NZ_CP047781.1_1852376-1852343|NZ_CP047781.1_1926622-1926589|NZ_CP047781.1_2517434-2517401|NZ_CP047781.1_2680062-2680029	NA	3	3	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|49aa|up_0|NZ_CP047781.1_70919_71066_+,NA|31aa|down_5|NZ_CP047781.1_76947_77040_+,NA|37aa|down_9|NZ_CP047781.1_80045_80156_+	NA|101aa|up_9|NZ_CP047781.1_59100_59403_+	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_8|NZ_CP047781.1_59585_60278_+	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|731aa|up_7|NZ_CP047781.1_60274_62467_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|668aa|up_6|NZ_CP047781.1_62470_64474_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|400aa|up_5|NZ_CP047781.1_64486_65686_+	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|513aa|up_4|NZ_CP047781.1_65774_67313_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|101aa|up_3|NZ_CP047781.1_67679_67982_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_2|NZ_CP047781.1_67983_69441_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_1|NZ_CP047781.1_69453_70881_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|49aa|up_0|NZ_CP047781.1_70919_71066_+	NA	NA|316aa|down_0|NZ_CP047781.1_71703_72651_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|down_1|NZ_CP047781.1_72731_74093_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|down_2|NZ_CP047781.1_74262_74793_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|down_3|NZ_CP047781.1_75039_76110_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|down_4|NZ_CP047781.1_76176_76731_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|down_5|NZ_CP047781.1_76947_77040_+	NA	NA|167aa|down_6|NZ_CP047781.1_77121_77622_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|down_7|NZ_CP047781.1_77913_79227_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|down_8|NZ_CP047781.1_79228_79960_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|down_9|NZ_CP047781.1_80045_80156_+	NA
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	2	173169-173254	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	173199-173224|173199-173224	NZ_CP047781.1_2826961-2826936|NZ_CP047781.1_2887045-2887020	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP047781.1_162058_163555_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047781.1_163547_163877_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047781.1_163888_164317_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047781.1_164309_166715_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047781.1_166845_167229_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047781.1_167292_167886_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047781.1_168300_168678_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047781.1_169039_170167_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047781.1_170474_171665_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047781.1_171773_173018_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047781.1_173412_174342_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047781.1_174583_175963_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047781.1_175952_177158_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047781.1_177508_178840_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047781.1_179165_179741_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047781.1_179745_180270_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047781.1_180285_180861_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047781.1_181020_184497_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047781.1_184497_188151_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047781.1_188316_189219_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	3	1242185-1242312	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|132aa|up_7|NZ_CP047781.1_1234344_1234740_-,NA|51aa|up_6|NZ_CP047781.1_1235340_1235493_-,NA	NA|274aa|up_9|NZ_CP047781.1_1231486_1232308_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047781.1_1232763_1234149_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047781.1_1234344_1234740_-	NA	NA|51aa|up_6|NZ_CP047781.1_1235340_1235493_-	NA	NA|200aa|up_5|NZ_CP047781.1_1235517_1236117_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047781.1_1236275_1236746_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047781.1_1236750_1237893_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047781.1_1238028_1238757_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047781.1_1238743_1240201_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047781.1_1240459_1241521_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047781.1_1250365_1250812_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047781.1_1250908_1251859_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047781.1_1251864_1252320_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047781.1_1252400_1253690_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047781.1_1253982_1255077_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP047781.1_1255267_1257004_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP047781.1_1257294_1257837_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP047781.1_1258139_1259177_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP047781.1_1259328_1260306_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP047781.1_1260566_1261403_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	4	1322337-1322416	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA	NA|414aa|up_9|NZ_CP047781.1_1312656_1313898_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047781.1_1314012_1315320_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047781.1_1315417_1316179_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047781.1_1316506_1317358_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047781.1_1317591_1317786_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047781.1_1318601_1319423_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047781.1_1319440_1320136_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047781.1_1320128_1321154_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047781.1_1321403_1321700_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047781.1_1321692_1322079_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047781.1_1322669_1323548_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP047781.1_1323725_1324106_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047781.1_1324263_1324620_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047781.1_1324763_1325084_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047781.1_1325233_1325773_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047781.1_1325855_1326572_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047781.1_1326719_1327142_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047781.1_1327540_1328035_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047781.1_1328190_1328808_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047781.1_1328880_1329441_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	5	1380619-1380703	4	CRISPRCasFinder	no	cas3	DEDDh,cas3,DinG,csa3,WYL	Unclear	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1380645-1380677|1380645-1380677	NZ_CP047781.1_299029-298997|NZ_CP047781.1_2625186-2625154	NA	1	1	Unclear	DEDDh,cas3,DinG,csa3,WYL	NA,NA|33aa|down_1|NZ_CP047781.1_1382163_1382262_-	NA|312aa|up_9|NZ_CP047781.1_1367772_1368708_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_8|NZ_CP047781.1_1368774_1370214_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_7|NZ_CP047781.1_1370221_1370707_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|281aa|up_6|NZ_CP047781.1_1370714_1371557_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP047781.1_1371562_1372495_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP047781.1_1373105_1375952_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP047781.1_1375959_1377945_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP047781.1_1378213_1378450_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_1|NZ_CP047781.1_1378446_1379097_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP047781.1_1379270_1380110_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP047781.1_1380878_1381989_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP047781.1_1382163_1382262_-	NA	NA|844aa|down_2|NZ_CP047781.1_1382303_1384835_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP047781.1_1385248_1385821_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP047781.1_1385881_1386556_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_5|NZ_CP047781.1_1386548_1387631_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|289aa|down_6|NZ_CP047781.1_1387994_1388861_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_7|NZ_CP047781.1_1389004_1389646_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_8|NZ_CP047781.1_1389809_1390865_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_9|NZ_CP047781.1_1391182_1392253_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	6	2423091-2423349	1,5	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|67aa|up_0|NZ_CP047781.1_2420377_2420578_+,NA|103aa|down_1|NZ_CP047781.1_2424782_2425091_-,NA|89aa|down_2|NZ_CP047781.1_2425234_2425501_-,NA|41aa|down_7|NZ_CP047781.1_2432939_2433062_-,NA|64aa|down_8|NZ_CP047781.1_2433496_2433688_+	NA|204aa|up_9|NZ_CP047781.1_2409210_2409822_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047781.1_2410372_2411650_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047781.1_2412126_2413950_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047781.1_2414088_2414505_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047781.1_2414735_2415428_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP047781.1_2415592_2416324_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047781.1_2416510_2417191_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047781.1_2417215_2418769_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047781.1_2418885_2420244_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP047781.1_2420377_2420578_+	NA	NA|289aa|down_0|NZ_CP047781.1_2423789_2424656_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047781.1_2424782_2425091_-	NA	NA|89aa|down_2|NZ_CP047781.1_2425234_2425501_-	NA	NA|603aa|down_3|NZ_CP047781.1_2425784_2427593_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047781.1_2427709_2428102_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047781.1_2428103_2430965_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047781.1_2431271_2432045_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_7|NZ_CP047781.1_2432939_2433062_-	NA	NA|64aa|down_8|NZ_CP047781.1_2433496_2433688_+	NA	NA|94aa|down_9|NZ_CP047781.1_2433945_2434227_-	pfam07205, DUF1413, Domain of unknown function (DUF1413)
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	7	2503800-2503898	6	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	AGCCTTTCTAGCTCATAAAATCCGCAGAAA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|35aa|up_0|NZ_CP047781.1_2503434_2503539_+,NA|35aa|down_2|NZ_CP047781.1_2506070_2506175_-	NA|453aa|up_9|NZ_CP047781.1_2493392_2494751_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047781.1_2494752_2495760_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047781.1_2495737_2496853_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047781.1_2496863_2497556_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047781.1_2497566_2498034_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047781.1_2498085_2499063_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047781.1_2499064_2500012_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047781.1_2500561_2501491_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047781.1_2502026_2503340_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047781.1_2503434_2503539_+	NA	NA|289aa|down_0|NZ_CP047781.1_2504038_2504905_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047781.1_2505231_2505918_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047781.1_2506070_2506175_-	NA	NA|480aa|down_3|NZ_CP047781.1_2506347_2507787_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047781.1_2507907_2508687_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047781.1_2508667_2509387_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047781.1_2509383_2510115_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047781.1_2510211_2511462_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047781.1_2511716_2512079_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047781.1_2512097_2512697_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	8	2680065-2680145	7	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2680090-2680120|2680090-2680120|2680090-2680120|2680090-2680120|2680090-2680120|2680090-2680120	NZ_CP047781.1_325275-325305|NZ_CP047781.1_944299-944329|NZ_CP047781.1_1318104-1318134|NZ_CP047781.1_82099-82069|NZ_CP047781.1_173190-173160|NZ_CP047781.1_1367403-1367373	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP047781.1_2670594_2670759_+,NA|106aa|up_8|NZ_CP047781.1_2671003_2671321_+,NA|84aa|up_5|NZ_CP047781.1_2676445_2676697_+,NA|57aa|up_0|NZ_CP047781.1_2679837_2680008_+,NA	NA|55aa|up_9|NZ_CP047781.1_2670594_2670759_+	NA	NA|106aa|up_8|NZ_CP047781.1_2671003_2671321_+	NA	NA|1056aa|up_7|NZ_CP047781.1_2671507_2674675_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047781.1_2674791_2676057_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047781.1_2676445_2676697_+	NA	NA|255aa|up_4|NZ_CP047781.1_2676688_2677453_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047781.1_2677615_2678056_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047781.1_2678048_2679260_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047781.1_2679361_2679712_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047781.1_2679837_2680008_+	NA	NA|341aa|down_0|NZ_CP047781.1_2680288_2681311_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047781.1_2681330_2681930_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047781.1_2681936_2682170_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047781.1_2682175_2682622_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047781.1_2682635_2683121_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047781.1_2683117_2684377_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047781.1_2684439_2684934_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047781.1_2684935_2685442_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047781.1_2685470_2686475_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047781.1_2686642_2687248_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009912435.1_ASM991243v1	NZ_CP047781	Staphylococcus aureus strain UP_1452 chromosome, complete genome	9	2700983-2701108	8	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA|61aa|down_1|NZ_CP047781.1_2702002_2702185_+,NA|56aa|down_8|NZ_CP047781.1_2710532_2710700_-	NA|185aa|up_9|NZ_CP047781.1_2690815_2691370_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|314aa|up_8|NZ_CP047781.1_2691490_2692432_-	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG:  Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax	NA|523aa|up_7|NZ_CP047781.1_2692837_2694405_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|270aa|up_6|NZ_CP047781.1_2694780_2695590_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047781.1_2695586_2696447_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047781.1_2696436_2697243_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP047781.1_2697247_2698042_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047781.1_2698290_2698728_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047781.1_2698741_2699140_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047781.1_2699488_2700925_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP047781.1_2701173_2701353_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP047781.1_2702002_2702185_+	NA	NA|555aa|down_2|NZ_CP047781.1_2702654_2704319_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047781.1_2704355_2705060_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047781.1_2705450_2705876_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047781.1_2706169_2706985_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP047781.1_2707195_2708050_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP047781.1_2708109_2710536_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP047781.1_2710532_2710700_-	NA	NA|139aa|down_9|NZ_CP047781.1_2710942_2711359_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
