The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	711943	721788	2672314		Staphylococcus_phage(11.11%)	12	NA	NA
WP_000931231.1|711943_712783_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.9e-55
WP_000702775.1|712914_713898_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000244415.1|713969_715025_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_064131607.1|715024_715711_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.7	8.2e-36
WP_001037807.1|715685_716159_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|716499_716940_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|717219_717804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|717902_718616_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|718619_719039_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|719040_719709_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_064131608.1|720059_720653_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|720636_721788_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	733764	748040	2672314		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663021.1|733764_734823_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|734980_735529_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|736216_737134_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|737224_737326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|737403_738909_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|739249_739750_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|739769_740636_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|741437_741836_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_064131610.1|741798_743904_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562500.1|744021_744993_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|745367_746339_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|746325_747282_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|747278_748040_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	991504	999977	2672314		Synechococcus_phage(33.33%)	9	NA	NA
WP_001622461.1|991504_991987_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010404.1|991973_993098_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174048.1|993101_993806_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_000848350.1|993805_994069_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666803.1|994070_994742_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032752.1|994734_996924_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|996902_998387_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030827.1|998379_999408_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000238657.1|999410_999977_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 4
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	1255338	1269772	2672314	head,integrase,terminase,portal	Staphylococcus_phage(57.14%)	24	1249161:1249178	1272608:1272625
1249161:1249178	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_160192292.1|1255338_1256046_-|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	6.1e-10
WP_001183755.1|1256098_1256794_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.5	2.1e-07
WP_000554409.1|1256805_1257189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|1257335_1257701_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842951.1|1257862_1258075_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	83.3	6.8e-26
WP_000789021.1|1258122_1258404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|1258574_1258736_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|1258822_1259140_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|1259129_1259396_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|1259400_1259937_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|1259937_1260717_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_076679818.1|1260797_1261292_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_043859346.1|1261305_1262220_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	51.3	1.1e-48
WP_000945229.1|1262220_1262511_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|1262525_1262684_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000860977.1|1262689_1263001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185174.1|1262993_1263524_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|1263665_1263773_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000835356.1|1263769_1264234_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_000653928.1|1264510_1264999_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|1265150_1265579_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207540.1|1265565_1266840_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
WP_000158569.1|1266852_1268301_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
WP_078064715.1|1268830_1269772_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.0e-52
1272608:1272625	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 5
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	1543023	1551335	2672314	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1543023_1543809_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1543934_1544825_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1544834_1546181_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683915.1|1546294_1547395_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|1547397_1548075_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1548205_1549312_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217237.1|1549535_1551335_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 6
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	1620649	1629693	2672314	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1620649_1621168_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594987.1|1621189_1623463_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000749795.1|1623666_1625946_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1626220_1626481_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1626499_1627639_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_031928192.1|1627661_1628687_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005764.1|1628688_1629693_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	1753134	1799581	2672314	tRNA,protease,transposase	Staphylococcus_phage(91.43%)	43	NA	NA
WP_160192302.1|1753134_1759692_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000836464.1|1760016_1760328_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001108717.1|1760349_1762764_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1763055_1764237_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|1764346_1765300_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|1765296_1765860_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|1765976_1766378_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1766948_1767776_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1767778_1767898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1768009_1769011_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1769132_1769597_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159030.1|1769609_1770791_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493880.1|1770801_1771434_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_029549219.1|1771440_1772472_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_001261660.1|1772965_1774468_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|1775110_1775425_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989113.1|1775424_1776717_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_001032834.1|1776803_1777658_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1777932_1778157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671060.1|1778355_1778826_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_001152694.1|1778938_1779382_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|1779368_1779812_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001168913.1|1780108_1780744_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492904.1|1780910_1781531_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1782384_1783098_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1783356_1783659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|1783914_1784280_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000623468.1|1784276_1784630_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_000453324.1|1784879_1785713_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1785924_1786833_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|1786957_1788151_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|1788522_1790115_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|1790494_1791241_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|1791245_1791719_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|1791784_1792042_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|1792038_1793040_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_000348383.1|1793044_1794523_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_072468941.1|1794681_1795137_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|1795439_1796090_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|1796170_1797166_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|1797241_1797868_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|1797908_1798250_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_098686295.1|1798451_1799581_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 8
NZ_CP047787	Staphylococcus aureus strain UP_1108 chromosome, complete genome	2672314	1934038	1945762	2672314	holin,tail	Staphylococcus_phage(100.0%)	15	NA	NA
WP_000669789.1|1934038_1934218_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1934528_1934789_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1934841_1935192_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1935876_1936326_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1936420_1936879_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1937405_1937897_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_064131634.1|1938087_1938843_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	5.8e-152
WP_000611512.1|1938854_1939109_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1939160_1939268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1939320_1939497_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1939646_1939943_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1940000_1940288_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1940334_1940487_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|1940476_1944262_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|1944277_1945762_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
