The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	0	21140	2948281	head,protease,capsid,portal,tail,terminase,holin	Staphylococcus_phage(100.0%)	23	NA	NA
WP_031891001.1|0_1695_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	90.4	9.9e-301
WP_001052526.1|1708_1912_+	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	75.4	4.3e-17
WP_073396983.1|1974_3171_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	87.7	3.8e-198
WP_025173991.1|3589_4174_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	95.9	3.0e-103
WP_000849953.1|4260_5496_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	79.5	1.0e-169
WP_001240639.1|5532_5691_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	88.5	3.9e-18
WP_001177664.1|5699_6032_+|head,tail	phage head-tail adapter protein	head,tail	A7TWQ4	Staphylococcus_phage	80.9	4.6e-45
WP_000671501.1|6021_6354_+|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	83.6	3.3e-51
WP_000501001.1|6353_6731_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	86.4	6.2e-54
WP_000608369.1|6727_7108_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	81.7	8.7e-56
WP_031892662.1|7108_8062_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	99.7	4.0e-174
WP_000442602.1|8126_8573_+	hypothetical protein	NA	O80053	Staphylococcus_phage	96.6	1.9e-73
WP_000570353.1|8632_8755_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_160199946.1|8810_13460_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	99.7	0.0e+00
WP_160199947.1|13459_14950_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	99.2	6.5e-296
WP_031895030.1|14965_18751_+	phage minor structural protein	NA	A0EX05	Staphylococcus_phage	99.9	0.0e+00
WP_001153681.1|18740_18893_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18939_19227_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|19284_19581_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|19730_19907_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19959_20067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20118_20373_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20384_21140_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
>prophage 2
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	25812	28547	2948281		Tupanvirus(50.0%)	3	NA	NA
WP_000449073.1|25812_26613_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	44.4	1.5e-41
WP_160200046.1|26602_27547_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000280814.1|27524_28547_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
>prophage 3
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	49957	50800	2948281		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209478.1|49957_50800_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.2	4.5e-12
>prophage 4
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	60721	81726	2948281	integrase,coat,terminase	Staphylococcus_phage(81.82%)	30	67332:67349	82433:82450
WP_000655687.1|60721_61825_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
WP_001573568.1|62488_63334_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000373076.1|63487_64369_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000157348.1|64398_64602_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001218732.1|64613_65711_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_001052483.1|65796_65988_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|66231_66528_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|66548_67052_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|67103_67346_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
67332:67349	attL	AAAGAAGAACAATAATAT	NA	NA	NA	NA
WP_000400841.1|67577_68297_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000270135.1|68409_69624_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|69784_70408_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|70556_70721_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|70721_70994_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|71005_71179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199949.1|71145_71349_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	1.7e-29
WP_000403837.1|71350_71734_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103967.1|71734_72061_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_001002709.1|72125_72995_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
WP_000447468.1|73008_74718_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
WP_000356942.1|75027_75408_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_001019762.1|75404_76046_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
WP_001288442.1|76753_77098_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_000214170.1|77128_77782_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_000771361.1|77834_78362_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_001656917.1|78493_78706_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|78702_79272_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801977.1|79548_80517_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|80658_81096_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|81213_81726_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
82433:82450	attR	AAAGAAGAACAATAATAT	NA	NA	NA	NA
>prophage 5
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	90878	92402	2948281		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930503.1|90878_92402_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.2	5.5e-40
>prophage 6
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	101502	104535	2948281		Klosneuvirus(50.0%)	2	NA	NA
WP_000264071.1|101502_102969_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|102993_104535_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
>prophage 7
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	107842	108169	2948281	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001799349.1|107842_108169_-|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	85.4	4.3e-11
>prophage 8
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	119656	122438	2948281		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000028598.1|119656_121213_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.7e-286
WP_000072632.1|121205_122438_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.9	2.7e-45
>prophage 9
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	145144	151381	2948281		Lactococcus_phage(33.33%)	6	NA	NA
WP_000634110.1|145144_146050_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	7.2e-48
WP_001036658.1|146042_147185_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_000569267.1|147475_148501_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.4e-31
WP_000467992.1|148504_149164_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000825534.1|149200_150043_+	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_001170274.1|150376_151381_+	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
>prophage 10
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	157842	159410	2948281	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_094409958.1|157842_159410_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 11
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	169681	171379	2948281		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109044.1|169681_171379_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 12
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	180224	180842	2948281		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|180224_180842_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 13
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	184748	187846	2948281	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
WP_000279925.1|184748_185588_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
WP_001051120.1|185872_187846_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
>prophage 14
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	193730	196195	2948281		Tupanvirus(50.0%)	2	NA	NA
WP_001252534.1|193730_195083_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
WP_000933774.1|195229_196195_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
>prophage 15
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	205451	215909	2948281	tRNA	Klosneuvirus(16.67%)	10	NA	NA
WP_160199955.1|205451_206747_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.3	8.2e-13
WP_000551283.1|206751_207291_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001167888.1|207548_209642_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000148605.1|210055_210937_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000057594.1|211115_212048_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000167936.1|212263_213067_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	6.7e-21
WP_001154303.1|213044_213410_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000613720.1|213406_213883_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_016186812.1|214276_214369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288202.1|214421_215909_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
>prophage 16
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	234993	237450	2948281	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|234993_237450_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 17
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	243461	248244	2948281	tRNA	Catovirus(50.0%)	8	NA	NA
WP_000631982.1|243461_244862_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	2.5e-55
WP_000370181.1|244854_245259_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000390332.1|245266_246013_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000664740.1|246012_246537_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000872867.1|246617_247187_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_001791441.1|247301_247445_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001074473.1|247500_247683_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001288302.1|247695_248244_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
>prophage 18
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	251927	262881	2948281		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000918664.1|251927_255479_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.2	6.1e-50
WP_001819727.1|255642_259239_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	4.3e-67
WP_000031892.1|259375_259630_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001142337.1|259727_260141_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_001137495.1|260206_260677_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_000090315.1|260799_262881_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
>prophage 19
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	265908	267096	2948281		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250820.1|265908_267096_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	1.5e-45
>prophage 20
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	273684	274347	2948281		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|273684_274347_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 21
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	293836	295237	2948281		Burkholderia_virus(100.0%)	1	NA	NA
WP_000347064.1|293836_295237_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	33.0	9.4e-55
>prophage 22
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	300826	301483	2948281		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|300826_301483_+	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 23
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	312787	314110	2948281		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860607.1|312787_314110_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	8.2e-109
>prophage 24
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	321641	324995	2948281		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_000180233.1|321641_322937_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
WP_001788287.1|322964_323486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200748.1|323984_324995_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
>prophage 25
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	337948	338509	2948281	integrase	Streptococcus_phage(100.0%)	1	330549:330563	343190:343204
330549:330563	attL	TATTATCATTGCATT	NA	NA	NA	NA
WP_001044966.1|337948_338509_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|337948_338509_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
343190:343204	attR	TATTATCATTGCATT	NA	NA	NA	NA
>prophage 26
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	351374	352118	2948281		Indivirus(100.0%)	1	NA	NA
WP_000894458.1|351374_352118_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-12
>prophage 27
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	359051	363010	2948281		Streptomyces_phage(33.33%)	3	NA	NA
WP_000832260.1|359051_359450_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
WP_000793055.1|359566_360862_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000817954.1|361282_363010_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
>prophage 28
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	366237	367035	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|366237_367035_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 29
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	373557	374601	2948281		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030763.1|373557_374601_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
>prophage 30
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	378966	379728	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|378966_379728_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 31
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	384449	385247	2948281		Lactobacillus_virus(100.0%)	1	NA	NA
WP_000731642.1|384449_385247_-	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
>prophage 32
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	390498	390972	2948281		Pandoravirus(100.0%)	1	NA	NA
WP_000833480.1|390498_390972_+	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
>prophage 33
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	396276	465462	2948281	tRNA,transposase,bacteriocin	Staphylococcus_phage(24.0%)	70	NA	NA
WP_001105942.1|396276_396951_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|396985_397198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|397913_398228_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153633.1|398227_399517_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_000358995.1|399534_399930_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|400309_400603_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000831610.1|402616_402928_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|402939_403566_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000277741.1|403927_405574_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001643491.1|405728_406106_+	recombinase	NA	NA	NA	NA	NA
WP_001582045.1|406045_406372_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|406438_406939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|407302_408163_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|408249_408591_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|408805_408901_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000843733.1|409450_410194_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_000998976.1|410983_411409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397995.1|412630_412954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|413182_413275_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|413576_414398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|414522_415518_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000690626.1|415852_416428_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|416694_418740_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|418754_420188_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|420254_421901_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_160199962.1|422263_424444_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	1.2e-250
WP_000159128.1|424436_424802_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|425039_425417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|425511_426186_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_000842865.1|426848_427538_-	DUF1129 family protein	NA	NA	NA	NA	NA
WP_001259673.1|427664_428108_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000733427.1|428174_428564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000545116.1|428701_429001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000638614.1|429080_429623_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000820892.1|429717_430284_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
WP_000148821.1|430285_430744_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000358501.1|430746_431430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469880.1|431601_432477_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000737163.1|432695_434327_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	2.3e-12
WP_000857616.1|434323_435997_+	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	24.2	2.0e-11
WP_001283444.1|436123_436567_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000794424.1|436793_437720_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000435104.1|437822_438731_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_000180420.1|438765_439053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005632.1|439335_440889_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_000952030.1|440974_442348_+	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.1	1.2e-46
WP_000154465.1|442502_442787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001191871.1|442783_443401_-	DUF1361 domain-containing protein	NA	NA	NA	NA	NA
WP_000776010.1|443587_444010_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_001041284.1|444219_445386_+	multidrug efflux MFS transporter NorA	NA	NA	NA	NA	NA
WP_000216727.1|445682_446135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001107240.1|446308_446791_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_001574605.1|447040_447805_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_000640738.1|447801_448722_+	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_001266540.1|448727_450686_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_001292237.1|450988_452170_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_000450253.1|452390_453740_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000931237.1|453953_454793_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
WP_000702776.1|454924_455908_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_094409958.1|455966_457533_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_160199963.1|457642_458698_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	6.1e-14
WP_000149344.1|458697_459384_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|459358_459832_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|460173_460614_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|460893_461478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|461576_462290_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|462293_462713_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|462714_463383_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_160199964.1|463733_464327_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217804.1|464310_465462_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 34
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	468601	492647	2948281		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_160199965.1|468601_470542_+	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.7e-110
WP_000525101.1|470813_472697_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	8.8e-56
WP_000983677.1|472708_474490_+	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000589241.1|474710_475688_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.1e-25
WP_000180987.1|475680_477195_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000663016.1|477434_478493_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|478651_479194_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|479745_480663_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|480753_480855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|480932_482438_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|482777_483278_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|483297_484164_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|484965_485364_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|485326_487432_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_160199966.1|487551_488523_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	5.5e-171
WP_000876311.1|489974_490946_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|490932_491889_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|491885_492647_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 35
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	501924	507629	2948281		Streptococcus_phage(66.67%)	5	NA	NA
WP_000460983.1|501924_502995_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
WP_000258151.1|503312_504368_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000192947.1|504531_505173_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000686342.1|505316_506183_+	DegV family protein	NA	NA	NA	NA	NA
WP_000370984.1|506546_507629_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.8	1.2e-44
>prophage 36
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	514067	514907	2948281		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749385.1|514067_514907_+	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 37
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	518225	521072	2948281		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662687.1|518225_521072_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 38
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	525411	532301	2948281	transposase	Streptococcus_phage(33.33%)	6	NA	NA
WP_160199967.1|525411_526347_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	8.4e-84
WP_000369719.1|527114_528026_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_001248939.1|528022_529018_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000006551.1|529126_530071_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_000121211.1|530129_531077_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001049165.1|531713_532301_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
>prophage 39
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	542989	552686	2948281	transposase	Staphylococcus_phage(40.0%)	8	NA	NA
WP_001121760.1|542989_544294_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
WP_000785248.1|544631_545090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|545156_545390_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165967.1|545518_546259_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001050041.1|546292_548665_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	1.9e-92
WP_001085185.1|548686_549151_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000121211.1|550553_551501_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001574560.1|551957_552686_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	4.8e-18
>prophage 40
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	562160	563404	2948281		Bacillus_phage(50.0%)	2	NA	NA
WP_001574556.1|562160_562847_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
WP_001059082.1|563203_563404_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
>prophage 41
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	566809	571987	2948281		Streptococcus_phage(50.0%)	8	NA	NA
WP_016187137.1|566809_567370_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
WP_000255545.1|567442_568060_-	amino acid transporter	NA	NA	NA	NA	NA
WP_000569884.1|568215_568710_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000974455.1|569108_569531_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000150036.1|569678_570395_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	6.8e-17
WP_000422908.1|570477_571017_+	nitroreductase	NA	NA	NA	NA	NA
WP_001147955.1|571166_571487_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000589549.1|571630_571987_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
>prophage 42
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	575096	576122	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_160199970.1|575096_576122_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	1.6e-27
>prophage 43
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	580072	583595	2948281		Indivirus(50.0%)	3	NA	NA
WP_000168845.1|580072_580834_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205574.1|580931_582239_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000807671.1|582353_583595_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.1e-110
>prophage 44
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	596806	599475	2948281		Tupanvirus(50.0%)	2	NA	NA
WP_000129645.1|596806_598264_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
WP_000613541.1|598260_599475_+	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
>prophage 45
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	603518	607146	2948281		Lake_Baikal_phage(50.0%)	3	NA	NA
WP_001143497.1|603518_603878_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
WP_000046076.1|604331_605540_+	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001009683.1|605670_607146_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	1.2e-47
>prophage 46
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	617080	624074	2948281		Aureococcus_anophage(33.33%)	6	NA	NA
WP_000035058.1|617080_617674_+	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
WP_001067294.1|618088_618466_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000838047.1|618827_619955_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_000167321.1|620262_621453_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.0	1.3e-33
WP_000138487.1|621561_622806_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000185311.1|623144_624074_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.8e-38
>prophage 47
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	634229	641689	2948281	transposase	Bacillus_phage(50.0%)	4	NA	NA
WP_000154949.1|634229_637883_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
WP_000670753.1|638048_638951_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902813.1|639276_639666_+	YisL family protein	NA	NA	NA	NA	NA
WP_000277741.1|640042_641689_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 48
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	644954	651765	2948281		Pseudomonas_phage(33.33%)	4	NA	NA
WP_001044234.1|644954_646769_+	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	8.8e-37
WP_000353950.1|646971_649581_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001047061.1|649639_650509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000619360.1|650619_651765_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
>prophage 49
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	662504	714413	2948281	protease,tRNA,transposase,holin	Bacillus_virus(20.0%)	47	NA	NA
WP_000786746.1|662504_663446_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_000197096.1|663464_665120_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000517177.1|665331_665598_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000121211.1|665589_666537_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_073392975.1|666651_668121_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067041.1|668171_669158_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|669160_670141_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001574526.1|670133_670784_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|670795_671677_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|671765_673333_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_160193886.1|673628_675275_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.7	9.0e-291
WP_000448933.1|675301_676291_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|676585_676981_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|677351_678071_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|678191_679178_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|679225_681034_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|681493_682300_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|682322_682688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224620.1|682791_683385_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|683570_683918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|683934_684570_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|684586_685396_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|685392_686247_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_160199971.1|686267_687653_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|687662_689507_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|689784_690555_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|690750_691836_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|692177_693746_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|693888_694647_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060545.1|694812_695538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355329.1|695539_696391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|697132_697642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|697754_698963_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|698922_700098_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340133.1|700529_702014_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|701994_702255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|702254_703817_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|704118_704922_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|705140_707465_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|707481_708840_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|708978_710490_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|710978_711548_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|711757_711976_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|712056_713043_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|713241_713418_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|713432_714035_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|714335_714413_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 50
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	717662	718304	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571191.1|717662_718304_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	5.0e-19
>prophage 51
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	722927	723218	2948281		Enterococcus_phage(100.0%)	1	NA	NA
WP_001794164.1|722927_723218_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	2.6e-07
>prophage 52
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	731521	732613	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160199973.1|731521_732613_-	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 53
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	736279	740053	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074519.1|736279_740053_-	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	38.0	1.1e-54
>prophage 54
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	750232	764995	2948281		Synechococcus_phage(22.22%)	14	NA	NA
WP_000225845.1|750232_751093_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	1.2e-39
WP_000861576.1|751293_751776_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|751762_752887_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|752890_753595_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|753594_753858_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|753859_754531_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032734.1|754523_756713_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483716.1|756691_758176_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000030814.1|758168_759197_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|759199_759766_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000709288.1|759780_761259_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_001101912.1|761280_762528_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000273254.1|762795_763602_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000921981.1|763594_764995_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	1.4e-10
>prophage 55
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	768174	772554	2948281		Streptococcus_phage(50.0%)	5	NA	NA
WP_000685075.1|768174_769347_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	1.5e-74
WP_000505964.1|769400_769943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000437472.1|770096_770363_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000040041.1|770365_772084_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_001289622.1|772320_772554_-	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	1.3e-09
>prophage 56
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	778668	779220	2948281		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|778668_779220_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 57
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	783861	787504	2948281		Erysipelothrix_phage(50.0%)	4	NA	NA
WP_000260117.1|783861_785268_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000455584.1|785438_785714_+	UPF0223 family protein	NA	NA	NA	NA	NA
WP_001020627.1|785857_786397_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000433551.1|786409_787504_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
>prophage 58
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	809145	812056	2948281		Paramecium_bursaria_Chlorella_virus(50.0%)	5	NA	NA
WP_000757584.1|809145_810075_-	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	6.5e-12
WP_001049150.1|810313_810568_+	YlbG family protein	NA	NA	NA	NA	NA
WP_000814565.1|810570_810960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001263793.1|811029_811572_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000401377.1|811573_812056_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 59
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	824035	825094	2948281	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|824035_825094_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 60
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	829972	834530	2948281		Bodo_saltans_virus(33.33%)	3	NA	NA
WP_000161937.1|829972_831685_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
WP_001249264.1|831694_834043_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	7.2e-15
WP_001018928.1|834215_834530_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
>prophage 61
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	845964	925558	2948281	integrase,head,protease,capsid,portal,tail,transposase,terminase,tRNA,holin	Staphylococcus_phage(94.12%)	100	839943:839959	858271:858287
839943:839959	attL	ACTGAAAATAATAAATT	NA	NA	NA	NA
WP_000669541.1|845964_846315_+	complement inhibitor SCIN-C	NA	A7TWS0	Staphylococcus_phage	50.0	1.9e-20
WP_001032820.1|846563_846749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000231331.1|847358_847592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857191.1|848461_849499_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|849557_850022_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|850121_850304_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|850507_850849_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|850854_851787_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|851802_852516_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|852478_852652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854073.1|852648_852912_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001025404.1|852927_853143_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|853131_853461_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|853511_854264_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|854279_854477_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762519.1|854463_854844_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001120201.1|854898_855222_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|855218_855380_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|855474_855777_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|855781_856042_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|856050_856314_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|856322_858266_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|858267_859188_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
858271:858287	attR	ACTGAAAATAATAAATT	NA	NA	NA	NA
WP_073394849.1|859268_859886_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000610648.1|859886_860357_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_000148321.1|860386_861280_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000338530.1|861286_861505_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|861513_861918_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|861930_862299_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|862302_862545_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|862559_862814_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_001066447.1|862963_863500_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|863536_863782_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|863778_863985_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|863981_864368_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|864364_864514_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|864513_864714_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|864741_865158_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|865389_865689_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|865819_866164_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|866160_867822_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|867837_869025_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|869008_869746_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|869769_870915_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|870934_871219_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|871208_871493_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|871476_871839_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|871835_872240_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|872236_872644_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|872644_873289_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|873330_873555_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|873604_873955_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001796452.1|874199_878729_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_160199974.1|878725_880210_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	5.8e-297
WP_160199975.1|880225_884011_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_001153681.1|884000_884153_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|884199_884487_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|884544_884841_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|884990_885167_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|885219_885327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|885378_885633_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|885644_886400_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|886590_887082_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|887608_888067_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|888161_888611_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|889296_889647_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|889699_889960_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|890270_890450_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_000765703.1|892118_892265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001801391.1|892221_892449_+	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	67.7	1.9e-18
WP_000277741.1|892750_894397_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001224174.1|894708_895425_-	superantigen-like protein SSL12	NA	NA	NA	NA	NA
WP_000794663.1|895533_896259_-	superantigen-like protein SSL13	NA	NA	NA	NA	NA
WP_000739586.1|896368_897094_-	superantigen-like protein SSL14	NA	NA	NA	NA	NA
WP_000793607.1|897523_898525_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_001074353.1|898547_899480_+	carbamate kinase	NA	NA	NA	NA	NA
WP_014532609.1|899701_901207_+	YfcC family protein	NA	NA	NA	NA	NA
WP_000149426.1|901513_901741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001239277.1|902056_903004_-	TDT family transporter	NA	NA	NA	NA	NA
WP_001245800.1|903250_903448_+	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	1.2e-19
WP_000398672.1|904346_904481_+	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_001794142.1|904604_905300_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_001289711.1|905407_905848_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_000340456.1|906042_907656_+	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_000480800.1|907799_908231_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_000468384.1|908246_909182_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000257598.1|909195_909597_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_001118652.1|909577_911812_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_000578458.1|912103_913069_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_000935984.1|913070_914420_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_000342188.1|914435_915755_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_000391030.1|915860_917267_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_000888997.1|917299_918472_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_076050783.1|918804_919521_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_001548498.1|919544_920213_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000018608.1|920209_920773_+	cell division protein SepF	NA	NA	NA	NA	NA
WP_000354114.1|920784_921075_+	YggT family protein	NA	NA	NA	NA	NA
WP_000232505.1|921157_921964_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_001117068.1|921987_922584_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_000384706.1|922804_925558_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	2.1e-90
>prophage 62
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	930489	935100	2948281		Enterobacteria_phage(33.33%)	4	NA	NA
WP_001178615.1|930489_931797_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
WP_001016166.1|931824_932706_+	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_000767018.1|932723_933998_+	dihydroorotase	NA	NA	NA	NA	NA
WP_001190910.1|933999_935100_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	9.6e-63
>prophage 63
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	939067	939679	2948281		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|939067_939679_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 64
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	942993	945250	2948281		Abalone_herpesvirus(50.0%)	3	NA	NA
WP_000368225.1|942993_943617_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
WP_000933956.1|943616_943835_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000722165.1|944050_945250_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
>prophage 65
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	950259	951195	2948281	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|950259_951195_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 66
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	954342	956337	2948281		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|954342_956337_+	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 67
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	966707	968828	2948281		Trichoplusia_ni_ascovirus(33.33%)	3	NA	NA
WP_000167269.1|966707_967442_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
WP_000426914.1|967747_967981_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000043237.1|968096_968828_+	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
>prophage 68
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	982212	995883	2948281	tRNA,protease	Emiliania_huxleyi_virus(16.67%)	11	NA	NA
WP_000176401.1|982212_982980_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
WP_001020801.1|983088_984255_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000110252.1|984276_985185_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	2.3e-17
WP_001041658.1|985411_986530_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000672864.1|986557_987802_+	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_000620184.1|987973_988846_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_001557331.1|989019_991095_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000195263.1|991250_992558_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001015609.1|992975_993872_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	6.1e-31
WP_000072681.1|993868_994414_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_000379051.1|994479_995883_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	6.4e-27
>prophage 69
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1000657	1001428	2948281		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|1000657_1001428_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 70
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1005701	1017516	2948281	tRNA	Clostridium_phage(33.33%)	9	NA	NA
WP_000139497.1|1005701_1010012_+	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
WP_000036631.1|1010301_1010769_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000097463.1|1010789_1011965_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000727423.1|1011985_1012270_+	YlxR family protein	NA	NA	NA	NA	NA
WP_000020856.1|1012266_1012584_+	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000043642.1|1012588_1014706_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000097322.1|1015092_1015443_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000282296.1|1015612_1016530_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000864182.1|1016544_1017516_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
>prophage 71
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1022656	1026914	2948281		Mycobacterium_phage(50.0%)	3	NA	NA
WP_042907377.1|1022656_1024900_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
WP_001293307.1|1024904_1025618_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000089941.1|1025648_1026914_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
>prophage 72
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1032399	1033443	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|1032399_1033443_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 73
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1042857	1049339	2948281		Cafeteria_roenbergensis_virus(33.33%)	4	NA	NA
WP_000073334.1|1042857_1045476_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
WP_000516249.1|1045488_1047498_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_001077635.1|1047503_1048046_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|1048520_1049339_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
>prophage 74
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1053877	1111636	2948281	head,tRNA,transposase,capsid	Staphylococcus_phage(38.89%)	69	NA	NA
WP_001574397.1|1053877_1054813_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561357.1|1054827_1055061_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1055282_1055759_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068622.1|1055870_1057109_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652040.1|1057127_1058366_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1058609_1058978_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1058996_1060337_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001659797.1|1060830_1061028_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078367270.1|1061319_1061856_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.3e-28
WP_000746372.1|1061836_1062340_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001255377.1|1062448_1062790_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000810443.1|1062845_1063436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031838476.1|1063442_1064489_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000681139.1|1064478_1066326_-	membrane protein	NA	NA	NA	NA	NA
WP_160199978.1|1066330_1067689_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.7	8.9e-42
WP_001049264.1|1067742_1070238_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358146.1|1070272_1070656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000015642.1|1070667_1070928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000692007.1|1070932_1071988_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000388596.1|1072048_1073074_-	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_000386891.1|1073315_1073618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000805733.1|1073631_1073952_-	DUF961 domain-containing protein	NA	NA	NA	NA	NA
WP_000134547.1|1074102_1074387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001071312.1|1075072_1075285_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_001002343.1|1075581_1075788_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_031788482.1|1076489_1076600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1076992_1077178_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000121213.1|1077389_1078337_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
WP_000477487.1|1078763_1079180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000585095.1|1080700_1080952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|1081012_1081678_+|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
WP_000905625.1|1081679_1081877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791415.1|1081941_1082070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000414196.1|1082036_1082621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791418.1|1083289_1083463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217295.1|1083473_1083668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000906224.1|1084424_1084673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429703.1|1084823_1085102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574384.1|1085147_1085414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600810.1|1085410_1085548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670291.1|1085615_1085951_+|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	60.4	2.6e-27
WP_001053369.1|1085957_1086155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199979.1|1086701_1087727_-	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_000435074.1|1087996_1088194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001160617.1|1088250_1089732_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_001794121.1|1089905_1090814_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.8e-21
WP_000603961.1|1090782_1091514_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000670311.1|1091517_1092609_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000624452.1|1092605_1093208_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001027143.1|1093320_1093509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000841344.1|1093647_1094181_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_000011827.1|1094323_1095178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001819878.1|1095508_1096084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199980.1|1096137_1097520_-	aspartate kinase	NA	NA	NA	NA	NA
WP_000735863.1|1097710_1098991_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_160199981.1|1098996_1100058_+	threonine synthase	NA	NA	NA	NA	NA
WP_000073177.1|1100059_1100974_+	homoserine kinase	NA	NA	NA	NA	NA
WP_000186306.1|1101031_1101835_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_094409958.1|1101908_1103475_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000580201.1|1103789_1104104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791424.1|1104078_1104183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000389946.1|1104322_1105777_-	amino acid permease	NA	NA	NA	NA	NA
WP_000089857.1|1105980_1107498_+	catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
WP_001265708.1|1107588_1107738_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001085657.1|1108191_1108461_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_000688127.1|1108617_1109595_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001791425.1|1109591_1109696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000380738.1|1109769_1110633_+	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
WP_001208760.1|1111012_1111636_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
>prophage 75
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1115785	1116907	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691309.1|1115785_1116907_+	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.1	2.1e-09
>prophage 76
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1120576	1122223	2948281		Vibrio_phage(100.0%)	1	NA	NA
WP_001088983.1|1120576_1122223_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.5	1.9e-22
>prophage 77
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1127839	1132233	2948281		Bacillus_virus(50.0%)	2	NA	NA
WP_001574370.1|1127839_1129831_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
WP_160199982.1|1129830_1132233_+	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.1e-92
>prophage 78
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1141502	1145068	2948281	transposase	Staphylococcus_virus(50.0%)	3	NA	NA
WP_000277741.1|1141502_1143149_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001123276.1|1143472_1143658_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_000283027.1|1143805_1145068_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	1.7e-95
>prophage 79
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1149386	1151739	2948281		Acinetobacter_phage(100.0%)	2	NA	NA
WP_000604802.1|1149386_1149953_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	1.7e-23
WP_000153717.1|1150956_1151739_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	1.2e-27
>prophage 80
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1159220	1159922	2948281		Tupanvirus(100.0%)	1	NA	NA
WP_000571253.1|1159220_1159922_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.0e-13
>prophage 81
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1163336	1166790	2948281		Streptococcus_phage(50.0%)	3	NA	NA
WP_000077549.1|1163336_1165151_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.3	2.3e-154
WP_000974850.1|1165290_1165932_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000079448.1|1165938_1166790_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	6.8e-16
>prophage 82
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1171215	1172817	2948281		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|1171215_1172817_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 83
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1180659	1185685	2948281	lysis	Yellowstone_lake_phycodnavirus(33.33%)	7	NA	NA
WP_000216956.1|1180659_1181925_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.0	4.0e-12
WP_000876206.1|1182160_1182562_-	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000809131.1|1182758_1182959_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000269923.1|1183129_1183438_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_001215907.1|1183599_1183869_+	acylphosphatase	NA	NA	NA	NA	NA
WP_001794103.1|1183887_1184517_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_000138413.1|1184548_1185685_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
>prophage 84
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1189220	1190012	2948281		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|1189220_1190012_-	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 85
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1196380	1198392	2948281		Hokovirus(50.0%)	2	NA	NA
WP_000166793.1|1196380_1197736_-	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
WP_000192137.1|1197732_1198392_-	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
>prophage 86
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1201800	1211765	2948281	transposase	Staphylococcus_phage(50.0%)	14	NA	NA
WP_160199987.1|1201800_1203291_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	1.7e-22
WP_000121211.1|1203529_1204477_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000801007.1|1204549_1204771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000473654.1|1204770_1205271_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000913317.1|1205282_1205711_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000159899.1|1205703_1206237_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000166055.1|1206322_1207162_-	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	5.1e-48
WP_000175746.1|1207176_1207656_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000934885.1|1207855_1208812_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000995290.1|1209235_1209673_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_160199988.1|1209688_1210321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001165814.1|1210358_1210610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001814377.1|1210621_1210816_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_160199989.1|1211060_1211765_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.3	1.9e-11
>prophage 87
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1250372	1251251	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|1250372_1251251_-	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 88
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1260715	1261342	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|1260715_1261342_+	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 89
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1265033	1272540	2948281	tRNA	Temperate_phage(25.0%)	5	NA	NA
WP_000362222.1|1265033_1265720_-	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
WP_000858795.1|1266048_1267341_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_160199991.1|1267662_1270356_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049917.1|1270379_1271351_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361536.1|1271337_1272540_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
>prophage 90
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1275912	1276488	2948281		Bacillus_virus(100.0%)	1	NA	NA
WP_000005208.1|1275912_1276488_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
>prophage 91
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1280150	1285291	2948281		Pandoravirus(25.0%)	6	NA	NA
WP_001269937.1|1280150_1281317_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
WP_000442480.1|1281785_1282235_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001819897.1|1282326_1283271_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774679.1|1283287_1284013_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1284015_1284588_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1285018_1285291_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
>prophage 92
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1294698	1297377	2948281		Acanthamoeba_polyphaga_moumouvirus(50.0%)	3	NA	NA
WP_000902107.1|1294698_1296078_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
WP_001163814.1|1296067_1297021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1297128_1297377_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
>prophage 93
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1300636	1310134	2948281		Staphylococcus_phage(20.0%)	9	NA	NA
WP_000723488.1|1300636_1302814_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	40.5	1.7e-31
WP_001574168.1|1302800_1303733_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987777.1|1303984_1305736_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1305716_1306442_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000159577.1|1306574_1307312_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000368652.1|1307304_1307847_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_160199992.1|1307839_1308571_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.6	3.1e-09
WP_001183424.1|1308662_1309169_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000447733.1|1309246_1310134_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
>prophage 94
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1315798	1317283	2948281		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|1315798_1317283_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 95
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1324137	1327700	2948281	transposase	Paenibacillus_phage(50.0%)	2	NA	NA
WP_094409958.1|1324137_1325705_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000193707.1|1326293_1327700_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 96
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1334528	1341098	2948281		Indivirus(66.67%)	6	NA	NA
WP_001291540.1|1334528_1335950_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	6.6e-40
WP_000942216.1|1336100_1337780_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001124985.1|1337795_1338248_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000183386.1|1338678_1339560_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	5.8e-10
WP_000159866.1|1339537_1339768_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_001286928.1|1339760_1341098_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
>prophage 97
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1348618	1351430	2948281		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000202178.1|1348618_1350091_-	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.1	1.4e-80
WP_000019697.1|1350083_1351430_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.9	2.1e-64
>prophage 98
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1356974	1357598	2948281		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|1356974_1357598_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 99
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1363770	1377498	2948281	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_000863556.1|1363770_1364370_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
WP_001095260.1|1364645_1365056_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_000564316.1|1365042_1365906_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001213908.1|1365947_1366733_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1366858_1367749_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1367758_1369105_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1369218_1370319_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_160199994.1|1370321_1370999_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1371129_1372236_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1372459_1374259_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_000411298.1|1374319_1375138_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001794939.1|1375148_1375772_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001030080.1|1376106_1377498_+|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
>prophage 100
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1380552	1381500	2948281		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117769.1|1380552_1381500_-	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	4.9e-47
>prophage 101
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1387969	1391077	2948281		Catovirus(50.0%)	2	NA	NA
WP_001119020.1|1387969_1389109_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.5	6.8e-27
WP_000034716.1|1389244_1391077_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
>prophage 102
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1394512	1400676	2948281		Streptococcus_phage(33.33%)	5	NA	NA
WP_000368338.1|1394512_1396336_-	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
WP_001274017.1|1396681_1396933_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_001282570.1|1396977_1397952_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_078061231.1|1398008_1400156_-	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	9.1e-33
WP_000439692.1|1400214_1400676_-	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
>prophage 103
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1417140	1452738	2948281	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_000648617.1|1417140_1417764_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
WP_000848304.1|1417763_1419032_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000137775.1|1419043_1419967_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_000342267.1|1419969_1420608_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000134779.1|1420892_1421201_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000939059.1|1421215_1421644_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000426912.1|1421647_1421908_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000734077.1|1421970_1424601_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_001283316.1|1424943_1427421_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000567025.1|1427422_1428091_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000066097.1|1428772_1429891_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000409167.1|1429891_1431034_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000985898.1|1431343_1432357_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000008061.1|1432593_1432740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752909.1|1432779_1432962_-	CsbD family protein	NA	NA	NA	NA	NA
WP_000704122.1|1433061_1433484_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000102741.1|1433568_1434843_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	6.3e-106
WP_000682640.1|1435003_1435777_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_001791215.1|1435776_1435905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044796.1|1436237_1438004_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_000590826.1|1438019_1439282_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000717800.1|1439742_1440618_-	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000869979.1|1440614_1441067_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_001058583.1|1441078_1443268_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_160199997.1|1443695_1444214_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	7.3e-29
WP_000595001.1|1444235_1446509_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1446711_1448991_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1449265_1449526_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1449544_1450684_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1450706_1451732_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1451733_1452738_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 104
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1462853	1465484	2948281	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425358.1|1462853_1465484_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	3.7e-153
>prophage 105
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1475050	1486204	2948281	tRNA,protease	Bacillus_virus(20.0%)	12	NA	NA
WP_000472293.1|1475050_1476313_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
WP_000127572.1|1476463_1477765_-	trigger factor	NA	NA	NA	NA	NA
WP_001790560.1|1477812_1477923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001280014.1|1477927_1478857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000032653.1|1478875_1479484_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.4	1.7e-21
WP_001138360.1|1479625_1479982_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001125540.1|1480028_1480229_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001791219.1|1480257_1480785_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	5.3e-11
WP_000049151.1|1481013_1482507_-	amino acid permease	NA	NA	NA	NA	NA
WP_000435132.1|1482933_1484871_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_016186894.1|1485095_1485191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000808621.1|1485283_1486204_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
>prophage 106
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1490118	1498283	2948281		Bacillus_virus(25.0%)	5	NA	NA
WP_001114454.1|1490118_1490991_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
WP_001038301.1|1491006_1493637_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	1.8e-46
WP_000849445.1|1493929_1495417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160200048.1|1495917_1497579_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	38.6	1.9e-33
WP_000080025.1|1497581_1498283_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
>prophage 107
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1503166	1504924	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|1503166_1504924_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 108
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1509856	1513054	2948281		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226930.1|1509856_1513054_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	5.5e-135
>prophage 109
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1530635	1534777	2948281		Paramecium_bursaria_Chlorella_virus(50.0%)	4	NA	NA
WP_000174275.1|1530635_1531379_-	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	8.3e-18
WP_000553919.1|1531458_1531905_+	OsmC family protein	NA	NA	NA	NA	NA
WP_160199998.1|1532019_1533186_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000808837.1|1533172_1534777_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
>prophage 110
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1538545	1541176	2948281	tRNA,protease	uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_001279341.1|1538545_1539820_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
WP_000186029.1|1539913_1541176_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
>prophage 111
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1547780	1549487	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862086.1|1547780_1549487_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.4	4.0e-273
>prophage 112
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1558059	1563429	2948281		Mycobacterium_phage(50.0%)	3	NA	NA
WP_000118301.1|1558059_1561884_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
WP_001048374.1|1561904_1562543_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_160199999.1|1562571_1563429_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	99.3	2.6e-71
>prophage 113
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1569012	1572949	2948281		Enterobacteria_phage(50.0%)	4	NA	NA
WP_000690628.1|1569012_1569606_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
WP_001284656.1|1569869_1570250_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096374.1|1570239_1571997_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733283.1|1572103_1572949_+	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
>prophage 114
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1581086	1651374	2948281	tRNA,protease	Staphylococcus_phage(93.18%)	65	NA	NA
WP_000284993.1|1581086_1582355_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	5.9e-56
WP_001050519.1|1582471_1589038_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.6	9.2e-294
WP_000836472.1|1589361_1589673_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001108722.1|1589694_1592109_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_001025064.1|1592400_1593582_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1593691_1594645_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1594641_1595205_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1595323_1595725_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266099.1|1596297_1597125_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1597127_1597247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1597358_1598360_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008556.1|1598481_1598946_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001159032.1|1598958_1600140_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1600150_1600783_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001819953.1|1600789_1601821_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_001261683.1|1602313_1603816_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221181.1|1604458_1604773_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_000989104.1|1604772_1606065_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1606151_1607006_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1607281_1607506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1607704_1608175_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1608287_1608731_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1608717_1609161_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1609458_1610094_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1610260_1610881_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1611338_1612052_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1612310_1612613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1612867_1613233_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1613229_1613583_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_000453316.1|1613832_1614666_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000366165.1|1614877_1615786_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1615910_1617104_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1617475_1619068_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1619360_1620107_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1620111_1620585_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1620650_1620908_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1620904_1621906_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1621910_1623389_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1623547_1624003_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1624304_1624955_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1625035_1626031_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1626106_1626733_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1626773_1627118_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1627215_1627788_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001093574.1|1627936_1629304_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1629303_1629873_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1630065_1630512_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1630962_1631058_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1631180_1631282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1631456_1631900_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1631899_1632343_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|1633309_1635730_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001819963.1|1635855_1636215_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1636442_1636892_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1636934_1638545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1638559_1638859_+	secretion protein	NA	NA	NA	NA	NA
WP_000413389.1|1639120_1640938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072622.1|1640974_1642129_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_001794363.1|1642121_1643861_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_001038742.1|1644040_1644760_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1644929_1645646_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038766.1|1646691_1647408_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1647531_1648251_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1649265_1649781_+	membrane protein	NA	NA	NA	NA	NA
WP_000711499.1|1650027_1651374_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 115
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1654628	1658908	2948281		Staphylococcus_phage(80.0%)	5	NA	NA
WP_001235656.1|1654628_1655384_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.8	2.3e-39
WP_000764684.1|1655422_1656208_-	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
WP_000721567.1|1656361_1657090_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.3e-28
WP_000821649.1|1657124_1657844_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	34.6	4.9e-23
WP_147612242.1|1658125_1658908_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	38.6	8.7e-34
>prophage 116
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1666771	1667512	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|1666771_1667512_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 117
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1677100	1677445	2948281		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|1677100_1677445_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 118
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1686347	1760754	2948281	head,integrase,capsid,plate,tail,portal,terminase,tRNA,holin	Staphylococcus_phage(82.09%)	88	1720697:1720713	1768284:1768300
WP_000181394.1|1686347_1686818_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001793998.1|1686822_1687965_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1688100_1688829_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_160200001.1|1688815_1690273_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063551.1|1690531_1691593_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1700421_1700868_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869463.1|1700964_1701915_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939530.1|1701920_1702376_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011603.1|1702456_1703746_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1704038_1705133_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|1705323_1707060_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1707350_1707893_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284755.1|1708195_1709233_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379091.1|1709384_1710362_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1710622_1711459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535849.1|1711467_1712985_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1712999_1713314_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|1713291_1714110_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1714370_1715180_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163281.1|1715520_1716036_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1716165_1716327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106875183.1|1716673_1716754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160200002.1|1716821_1717559_-	hypothetical protein	NA	A7YGY5	Staphylococcus_virus	97.6	4.5e-133
WP_000238963.1|1717565_1718360_-	phosphatidylinositol kinase	NA	Q4ZAU0	Staphylococcus_virus	100.0	8.3e-149
WP_061641004.1|1718868_1720314_-	CHAP domain-containing protein	NA	A0A0H3U310	Staphylococcus_phage	97.7	1.8e-290
WP_160200003.1|1720294_1720732_-|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	98.6	9.1e-73
1720697:1720713	attL	TTTATTTTTAAATCTCA	NA	NA	NA	NA
WP_029550581.1|1720786_1721182_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	99.2	7.9e-68
WP_098827718.1|1721187_1722360_-|plate	BppU family phage baseplate upper protein	plate	A0EWN2	Staphylococcus_virus	99.2	2.7e-196
WP_000524023.1|1722372_1724271_-	CHAP domain-containing protein	NA	B2ZZ02	Staphylococcus_phage	99.1	0.0e+00
WP_000466778.1|1724407_1724707_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000782200.1|1724746_1724920_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|1724923_1725301_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_053868349.1|1725300_1727124_-|plate	BppU family phage baseplate upper protein	plate	A0A0H4ISS3	Staphylococcus_phage	99.8	0.0e+00
WP_160200004.1|1727123_1729034_-	hypothetical protein	NA	A0EWM6	Staphylococcus_virus	98.9	0.0e+00
WP_160200005.1|1729048_1730950_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	99.7	0.0e+00
WP_000350680.1|1730958_1731906_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_160200006.1|1731918_1735386_-	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.8	1.2e-273
WP_000105584.1|1735402_1735747_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100163.1|1735776_1736142_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002583.1|1736203_1736785_-|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
WP_098827722.1|1736803_1737187_-	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	98.4	5.9e-68
WP_031925055.1|1737198_1737546_-	HK97 gp10 family phage protein	NA	B2ZYY9	Staphylococcus_phage	98.3	5.9e-59
WP_001268313.1|1737545_1737848_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	99.0	7.4e-50
WP_000208960.1|1737844_1738177_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114085.1|1738185_1738473_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000438513.1|1738494_1739469_-|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	100.0	1.7e-183
WP_000392143.1|1739482_1740103_-	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	99.0	8.6e-77
WP_000072202.1|1740211_1740382_-	hypothetical protein	NA	B2ZYY3	Staphylococcus_phage	100.0	6.7e-24
WP_098827723.1|1740454_1741450_-|head	phage head morphogenesis protein	head	B2ZYY2	Staphylococcus_phage	99.7	1.3e-183
WP_000921897.1|1741456_1742992_-|portal	phage portal protein	portal	Q8SDU8	Staphylococcus_phage	99.2	9.3e-290
WP_160200007.1|1743002_1744280_-|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	99.3	2.1e-247
WP_001003272.1|1744266_1744707_-|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000162696.1|1744893_1745316_-	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_000990005.1|1745339_1745486_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000595244.1|1745486_1745660_-	transcriptional activator RinB	NA	S4SVE4	Staphylococcus_phage	100.0	6.4e-22
WP_160200008.1|1745659_1746052_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	99.2	2.4e-64
WP_000483477.1|1746035_1746272_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_029727878.1|1746296_1746476_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.3	9.2e-24
WP_141065319.1|1746472_1746535_-	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_001061840.1|1746571_1747105_-	hypothetical protein	NA	Q4ZBS9	Staphylococcus_virus	98.9	5.1e-94
WP_000454994.1|1747281_1747563_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_001065110.1|1747726_1747978_-	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
WP_001126839.1|1747992_1748241_-	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_000029372.1|1748241_1748601_-	hypothetical protein	NA	A0A0E3T8L4	Staphylococcus_phage	99.2	5.9e-62
WP_000101252.1|1748728_1749034_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187250.1|1749034_1749220_-	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	98.4	1.6e-26
WP_000049786.1|1749224_1749629_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	98.5	3.5e-71
WP_001123688.1|1749639_1749861_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000256597.1|1749873_1750032_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_000803070.1|1750025_1750805_-	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	100.0	1.4e-145
WP_160200009.1|1750814_1751618_-	replication protein	NA	A0A1X9H0K3	Staphylococcus_phage	99.6	8.7e-114
WP_001644874.1|1751589_1752282_-	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	100.0	1.0e-131
WP_000704705.1|1752294_1752846_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001644875.1|1752874_1753663_-	ATP-binding protein	NA	A0A1X9H046	Staphylococcus_phage	100.0	2.6e-142
WP_000815402.1|1753655_1753877_-	DUF2483 domain-containing protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|1753886_1754147_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|1754243_1754405_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|1754397_1754619_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|1754689_1754920_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000187184.1|1755110_1755335_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_123985805.1|1755335_1756103_-	phage antirepressor KilAC domain-containing protein	NA	A0A0F6N3N8	Staphylococcus_phage	98.0	5.2e-140
WP_000108121.1|1756102_1756297_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	96.9	6.9e-25
WP_001055142.1|1756559_1756892_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	98.2	2.0e-56
WP_000775189.1|1756908_1757583_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	94.6	5.2e-120
WP_000661378.1|1757611_1758337_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	95.4	7.4e-120
WP_000391592.1|1758553_1759459_+	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000143212.1|1759395_1759596_-	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_015977943.1|1759707_1760754_+|integrase	site-specific integrase	integrase	Q4ZDS8	Staphylococcus_virus	100.0	1.2e-200
1768284:1768300	attR	TGAGATTTAAAAATAAA	NA	NA	NA	NA
>prophage 119
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1766783	1767413	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|1766783_1767413_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 120
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1772394	1772808	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001643743.1|1772394_1772808_-	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.5	3.0e-17
>prophage 121
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1776261	1781289	2948281		Staphylococcus_phage(33.33%)	5	NA	NA
WP_000613738.1|1776261_1776816_+	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
WP_000140179.1|1776882_1777953_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000548777.1|1778199_1778730_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_001147874.1|1778899_1780261_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	43.0	1.5e-102
WP_001231458.1|1780341_1781289_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
>prophage 122
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1788461	1795239	2948281		Ralstonia_phage(33.33%)	5	NA	NA
WP_000774552.1|1788461_1790465_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
WP_000992924.1|1790468_1792661_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272063.1|1792657_1793350_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1793532_1793835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1793943_1795239_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
>prophage 123
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1798929	1801213	2948281		Bacillus_virus(100.0%)	2	NA	NA
WP_000040861.1|1798929_1799751_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284434.1|1799743_1801213_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
>prophage 124
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1805243	1807274	2948281		Bacillus_phage(50.0%)	2	NA	NA
WP_160200011.1|1805243_1806341_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
WP_000149686.1|1806713_1807274_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
>prophage 125
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1811470	1811872	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|1811470_1811872_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 126
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1817117	1875107	2948281	integrase,protease,transposase,coat,terminase,tRNA	Staphylococcus_phage(57.58%)	60	1832123:1832143	1873921:1873941
WP_000763048.1|1817117_1817990_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645732.1|1817986_1818667_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991315.1|1818667_1819564_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1819560_1819941_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|1820198_1820375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1820616_1820715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068528.1|1820914_1822201_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000277741.1|1822448_1824095_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000669728.1|1824392_1826462_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_078100845.1|1826850_1827843_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	98.9	5.0e-159
WP_000595617.1|1828099_1829119_-	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
WP_000791402.1|1829140_1830196_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
WP_000206618.1|1830627_1831851_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
1832123:1832143	attL	TGTTGGGGCCCCGCCAACTTG	NA	NA	NA	NA
WP_001045073.1|1832289_1833597_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001573771.1|1834174_1834516_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
WP_001573769.1|1834505_1834802_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	40.4	6.7e-11
WP_000201397.1|1834798_1834978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001239269.1|1836096_1837032_+	TDT family transporter	NA	NA	NA	NA	NA
WP_000812237.1|1837886_1838114_-	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
WP_001035597.1|1838532_1839237_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293073.1|1839391_1839961_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000358778.1|1839957_1840299_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771368.1|1840301_1840829_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448775.1|1840879_1841098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|1841115_1841694_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190608.1|1841705_1842047_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
WP_001019766.1|1842582_1843224_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	3.5e-113
WP_000356937.1|1843220_1843601_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
WP_001002721.1|1845634_1846504_-	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
WP_001103930.1|1846567_1846885_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
WP_000403839.1|1846885_1847269_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231378.1|1847270_1847474_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000708433.1|1847458_1847614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|1847610_1847928_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|1847932_1848151_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|1848323_1848998_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179345.1|1849011_1850184_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
WP_000240651.1|1850252_1851869_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
WP_000917289.1|1851944_1852229_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197638.1|1852403_1853147_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000120330.1|1853171_1854386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000522388.1|1854582_1855209_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_000867948.1|1855569_1856355_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_001549197.1|1856956_1857091_-	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_001105709.1|1857326_1857890_+	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_000735197.1|1857893_1858034_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_073392933.1|1858115_1859351_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_000688492.1|1859369_1860086_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_001253292.1|1860459_1861419_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_001791588.1|1861415_1862900_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
WP_000790325.1|1863048_1863999_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_160200012.1|1864182_1865433_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.0	5.8e-40
WP_000581078.1|1865641_1865866_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_073392939.1|1865925_1866954_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_094409958.1|1867298_1868866_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001283612.1|1868973_1869609_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602046.1|1869861_1871790_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
WP_001791590.1|1871934_1872063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000106312.1|1872157_1873768_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
WP_000159047.1|1874081_1875107_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
1873921:1873941	attR	CAAGTTGGCGGGGCCCCAACA	NA	NA	NA	NA
>prophage 127
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1878867	1883591	2948281		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_000047828.1|1878867_1880637_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	4.1e-63
WP_000196911.1|1880636_1880891_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_072399972.1|1881012_1882032_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000094572.1|1882061_1883591_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.6	9.4e-08
>prophage 128
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1897704	1901088	2948281		Bacillus_phage(50.0%)	5	NA	NA
WP_001041107.1|1897704_1898475_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
WP_001190825.1|1898449_1898929_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001052491.1|1898930_1899257_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_000390829.1|1899375_1900377_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_000621176.1|1900725_1901088_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
>prophage 129
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1906238	1908266	2948281		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546609.1|1906238_1908266_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.9e-25
>prophage 130
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1913940	1915461	2948281		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178940.1|1913940_1915461_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 131
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1923653	1924301	2948281		Moumouvirus(100.0%)	1	NA	NA
WP_001187612.1|1923653_1924301_+	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	4.7e-09
>prophage 132
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1930410	1930806	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_000932696.1|1930410_1930806_-	single-stranded DNA-binding protein	NA	A0A1B1PAE7	Bacillus_phage	36.8	3.0e-14
>prophage 133
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1941465	1949218	2948281		Catovirus(25.0%)	9	NA	NA
WP_000723407.1|1941465_1942596_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.0e-27
WP_000048712.1|1942619_1943249_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000120494.1|1943276_1944515_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000654191.1|1944541_1945066_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000697334.1|1945172_1945592_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_001801520.1|1945588_1946686_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000248730.1|1946718_1947555_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000460244.1|1947541_1948618_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000273356.1|1948618_1949218_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
>prophage 134
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1957021	1958632	2948281		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|1957021_1958632_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 135
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1966565	1972379	2948281	transposase	Geobacillus_virus(33.33%)	6	NA	NA
WP_001242308.1|1966565_1967867_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.4e-132
WP_001083335.1|1968146_1968809_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000160304.1|1969123_1969834_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_160200016.1|1969954_1970398_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	52.9	2.8e-37
WP_001123310.1|1970597_1971011_-	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA	NA
WP_000121211.1|1971431_1972379_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
>prophage 136
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	1979978	1987396	2948281	transposase	Staphylococcus_virus(33.33%)	6	NA	NA
WP_000277741.1|1979978_1981625_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_073392962.1|1982050_1982155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792784.1|1982834_1982993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000370937.1|1983651_1984509_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000908186.1|1984576_1985359_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	5.7e-09
WP_000334466.1|1985590_1987396_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.6e-97
>prophage 137
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2004638	2005547	2948281		Klosneuvirus(100.0%)	1	NA	NA
WP_000162591.1|2004638_2005547_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.7	1.2e-26
>prophage 138
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2021346	2022315	2948281		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2021346_2022315_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 139
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2032518	2034081	2948281		Vibrio_phage(100.0%)	1	NA	NA
WP_000792332.1|2032518_2034081_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	3.5e-18
>prophage 140
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2038049	2039462	2948281		Pandoravirus(100.0%)	1	NA	NA
WP_000169223.1|2038049_2039462_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 141
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2045781	2048844	2948281		Orpheovirus(50.0%)	5	NA	NA
WP_001573518.1|2045781_2046522_+	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	7.3e-14
WP_000333457.1|2046779_2047388_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001293423.1|2047401_2047695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001573519.1|2047649_2047775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015495.1|2047995_2048844_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
>prophage 142
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2052222	2060785	2948281		Clostridium_phage(33.33%)	8	NA	NA
WP_001044451.1|2052222_2053077_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	34.8	1.3e-06
WP_000044369.1|2053287_2054103_-	hydrolase	NA	NA	NA	NA	NA
WP_000769709.1|2054397_2054823_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000179061.1|2055213_2055918_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000130145.1|2055954_2057619_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	4.7e-45
WP_001791584.1|2058088_2058271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000136272.1|2058920_2059100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000204271.1|2059348_2060785_-	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	5.5e-58
>prophage 143
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2063826	2067435	2948281	transposase	Staphylococcus_phage(33.33%)	3	NA	NA
WP_000586768.1|2063826_2064687_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	7.4e-10
WP_000389651.1|2064683_2065493_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.8	1.4e-18
WP_094409958.1|2065868_2067435_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 144
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2090615	2093783	2948281		Leptospira_phage(100.0%)	1	NA	NA
WP_000592290.1|2090615_2093783_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	4.3e-63
>prophage 145
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2105750	2106356	2948281		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2105750_2106356_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 146
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2125329	2126139	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717395.1|2125329_2126139_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 147
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2130059	2134326	2948281		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000737700.1|2130059_2130551_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
WP_000417008.1|2130909_2131863_+	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000684154.1|2131954_2133079_-	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_072460394.1|2133687_2134326_-	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	47.4	4.5e-36
>prophage 148
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2147329	2147965	2948281		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285452.1|2147329_2147965_-	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.6	7.1e-10
>prophage 149
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2155844	2156726	2948281		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730056.1|2155844_2156726_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	1.7e-62
>prophage 150
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2162417	2162837	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_000920241.1|2162417_2162837_+	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	7.7e-37
>prophage 151
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2170194	2171094	2948281		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524842.1|2170194_2171094_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	2.7e-15
>prophage 152
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2183750	2184959	2948281		Salmonella_phage(100.0%)	1	NA	NA
WP_000999130.1|2183750_2184959_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.5	3.0e-33
>prophage 153
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2188696	2195253	2948281		Planktothrix_phage(25.0%)	8	NA	NA
WP_001229922.1|2188696_2189362_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	7.2e-37
WP_000761409.1|2189361_2190417_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000249492.1|2190552_2191227_+	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	44.7	8.0e-52
WP_000477322.1|2191219_2192593_+	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	1.1e-12
WP_000977031.1|2192755_2193199_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000793166.1|2193195_2193651_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000372857.1|2193827_2194391_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000388431.1|2194524_2195253_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.7e-28
>prophage 154
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2205716	2206751	2948281		Bacillus_virus(100.0%)	1	NA	NA
WP_000655979.1|2205716_2206751_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.2	1.7e-16
>prophage 155
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2217692	2219339	2948281	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_000277741.1|2217692_2219339_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 156
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2230069	2231629	2948281		Escherichia_phage(100.0%)	1	NA	NA
WP_000692652.1|2230069_2231629_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 157
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2248493	2249225	2948281		Bacillus_virus(100.0%)	1	NA	NA
WP_000615467.1|2248493_2249225_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	1.3e-23
>prophage 158
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2257118	2262873	2948281		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000594516.1|2257118_2258048_+	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
WP_000916697.1|2258598_2259546_+	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	2.1e-138
WP_001056917.1|2259547_2260525_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	2.4e-142
WP_000200947.1|2260576_2261044_-	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000286868.1|2261054_2261747_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000971554.1|2261757_2262873_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.9	7.1e-21
>prophage 159
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2266123	2273615	2948281	transposase	Bacillus_phage(50.0%)	6	NA	NA
WP_000121211.1|2266123_2267071_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000486505.1|2267408_2269142_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	1.5e-30
WP_001064829.1|2269166_2270930_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.6e-35
WP_000482647.1|2271577_2271685_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000779351.1|2271818_2272205_-	GtrA family protein	NA	NA	NA	NA	NA
WP_001176855.1|2272472_2273615_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	2.6e-55
>prophage 160
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2291991	2293218	2948281		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948990.1|2291991_2293218_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 161
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2296611	2301038	2948281		Pandoravirus(50.0%)	4	NA	NA
WP_000700902.1|2296611_2297964_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	3.0e-13
WP_000026190.1|2298025_2299213_-	MFS transporter	NA	NA	NA	NA	NA
WP_000072154.1|2299606_2300383_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000923514.1|2300375_2301038_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.5	2.2e-17
>prophage 162
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2307271	2308829	2948281		Bacillus_virus(50.0%)	2	NA	NA
WP_000590515.1|2307271_2308021_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
WP_000173876.1|2308013_2308829_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	6.1e-14
>prophage 163
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2316894	2317713	2948281		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824929.1|2316894_2317713_-	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
>prophage 164
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2323389	2324085	2948281		Bacillus_phage(100.0%)	1	NA	NA
WP_000217452.1|2323389_2324085_-	oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	5.1e-09
>prophage 165
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2328528	2335705	2948281		Bacillus_phage(66.67%)	6	NA	NA
WP_000088715.1|2328528_2331390_-	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	1.2e-27
WP_000755954.1|2331391_2331784_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001793882.1|2331900_2333709_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.5	1.0e-93
WP_000678764.1|2333992_2334259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001573690.1|2334402_2334711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000721330.1|2334838_2335705_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	4.4e-79
>prophage 166
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2354302	2354998	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382892.1|2354302_2354998_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	2.0e-37
>prophage 167
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2364414	2365407	2948281		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161541.1|2364414_2365407_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	9.7e-38
>prophage 168
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2374231	2380614	2948281		Powai_lake_megavirus(33.33%)	5	NA	NA
WP_001228158.1|2374231_2375200_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	3.1e-12
WP_000240663.1|2375320_2375677_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000206033.1|2375718_2376129_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000473682.1|2376508_2378575_-	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_001062662.1|2378874_2380614_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
>prophage 169
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2387038	2390028	2948281	protease	Streptococcus_phage(50.0%)	2	NA	NA
WP_000262597.1|2387038_2387560_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
WP_001063330.1|2387922_2390028_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.5	6.9e-118
>prophage 170
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2399269	2403586	2948281		uncultured_virus(50.0%)	3	NA	NA
WP_160200029.1|2399269_2401678_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	2.9e-128
WP_000076662.1|2402291_2402498_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000161364.1|2402587_2403586_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
>prophage 171
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2412025	2415224	2948281		Salmonella_virus(50.0%)	2	NA	NA
WP_000379825.1|2412025_2413837_-	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
WP_000751265.1|2414522_2415224_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.8	2.1e-39
>prophage 172
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2443379	2453490	2948281	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000030061.1|2443379_2444717_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	6.7e-18
WP_001237625.1|2444970_2445387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031407.1|2445509_2446400_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001130051.1|2446592_2448089_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001793854.1|2448515_2448716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001172333.1|2448775_2450374_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.6	2.6e-77
WP_001028789.1|2450567_2451011_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000011688.1|2451290_2451503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000066521.1|2451780_2453490_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
>prophage 173
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2458366	2460750	2948281		Enterococcus_phage(100.0%)	2	NA	NA
WP_160200030.1|2458366_2458903_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	5.0e-41
WP_001071721.1|2458899_2460750_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.9	1.3e-234
>prophage 174
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2465804	2466302	2948281		Canarypox_virus(100.0%)	1	NA	NA
WP_001065273.1|2465804_2466302_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 175
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2469722	2471473	2948281		Planktothrix_phage(50.0%)	2	NA	NA
WP_000923769.1|2469722_2470478_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
WP_000143430.1|2470585_2471473_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	3.3e-05
>prophage 176
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2497069	2500616	2948281	transposase	Enterococcus_phage(50.0%)	2	NA	NA
WP_001125624.1|2497069_2498929_+	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	4.3e-15
WP_094409958.1|2499048_2500616_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 177
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2527426	2528119	2948281		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2527426_2528119_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 178
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2540461	2541475	2948281		Faustovirus(100.0%)	1	NA	NA
WP_000639194.1|2540461_2541475_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	3.7e-08
>prophage 179
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2564124	2567546	2948281		Lactococcus_phage(33.33%)	5	NA	NA
WP_001059079.1|2564124_2564325_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_001054127.1|2564451_2565021_-	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_000779134.1|2565280_2565676_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000491382.1|2565743_2566097_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000742837.1|2566706_2567546_-	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
>prophage 180
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2577633	2586669	2948281	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000255586.1|2577633_2579568_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
WP_000819094.1|2579604_2582265_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.8	1.0e-118
WP_000449218.1|2582352_2583165_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_160200033.1|2583490_2585005_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.7	4.4e-90
WP_000884331.1|2585382_2586669_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	1.6e-88
>prophage 181
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2593354	2603358	2948281		Bacillus_phage(40.0%)	7	NA	NA
WP_000375647.1|2593354_2594755_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095328.1|2595033_2596317_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000101976.1|2597513_2598215_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871607.1|2598227_2600054_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_001060137.1|2600046_2601381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104169.1|2601381_2602170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088649.1|2602557_2603358_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
>prophage 182
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2606944	2618266	2948281		Bacillus_phage(50.0%)	8	NA	NA
WP_000504025.1|2606944_2608363_+	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	29.3	1.2e-17
WP_000858081.1|2608455_2613195_+	DEAD/DEAH box helicase	NA	A0A2H4UTW8	Bodo_saltans_virus	27.9	3.8e-47
WP_001015148.1|2613295_2613517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000849084.1|2613531_2614035_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000703986.1|2614050_2614365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000859154.1|2614451_2614802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001186594.1|2615267_2616896_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	28.7	4.9e-47
WP_000806249.1|2616916_2618266_-	recombinase family protein	NA	Q9T200	Bacillus_phage	25.5	2.8e-19
>prophage 183
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2622902	2623577	2948281	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106068.1|2622902_2623577_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.5	1.3e-123
>prophage 184
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2634147	2634783	2948281		Bacillus_virus(100.0%)	1	NA	NA
WP_000912323.1|2634147_2634783_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	24.5	4.6e-09
>prophage 185
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2642127	2644233	2948281		Indivirus(100.0%)	1	NA	NA
WP_000766543.1|2642127_2644233_-	peptidase domain-containing ABC transporter	NA	A0A1V0SE00	Indivirus	34.2	3.1e-25
>prophage 186
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2648747	2650109	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000725320.1|2648747_2650109_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	36.0	5.7e-57
>prophage 187
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2653403	2655307	2948281	integrase,transposase	Staphylococcus_phage(66.67%)	3	2641785:2641800	2657290:2657305
2641785:2641800	attL	AAAGGAAGTTAAGCAA	NA	NA	NA	NA
WP_000335382.1|2653403_2653913_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0C5AEB1	Paenibacillus_phage	43.9	8.2e-41
WP_000251972.1|2654080_2654191_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	95.7	2.0e-05
WP_000608675.1|2654566_2655307_+	exotoxin	NA	A0EX09	Staphylococcus_phage	37.5	2.7e-32
2657290:2657305	attR	AAAGGAAGTTAAGCAA	NA	NA	NA	NA
>prophage 188
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2691851	2696061	2948281		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000136642.1|2691851_2692850_-	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.2	7.5e-14
WP_000924992.1|2692846_2693842_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_001045124.1|2693857_2694850_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000570808.1|2695080_2696061_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
>prophage 189
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2704327	2709422	2948281		Tupanvirus(50.0%)	5	NA	NA
WP_001223717.1|2704327_2705530_+	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.3	5.1e-09
WP_001015549.1|2705533_2706298_+	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_000414632.1|2706493_2707120_+	MFS transporter	NA	NA	NA	NA	NA
WP_000183771.1|2707330_2708107_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_001793810.1|2708441_2709422_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.3	1.3e-47
>prophage 190
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2714356	2714956	2948281		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|2714356_2714956_+	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 191
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2722842	2723616	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078278.1|2722842_2723616_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	6.4e-13
>prophage 192
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2729074	2730250	2948281		Clostridium_phage(100.0%)	1	NA	NA
WP_160200039.1|2729074_2730250_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	1.5e-29
>prophage 193
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2734273	2740838	2948281		Catovirus(50.0%)	6	NA	NA
WP_000037317.1|2734273_2734960_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
WP_000565301.1|2734962_2735727_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000940769.1|2735746_2737570_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.4	3.0e-29
WP_000459062.1|2737559_2738588_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_001028294.1|2738600_2739710_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000413167.1|2739713_2740838_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	3.9e-128
>prophage 194
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2747855	2750340	2948281		Bacillus_phage(50.0%)	2	NA	NA
WP_000779509.1|2747855_2749118_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	2.5e-22
WP_000723445.1|2749194_2750340_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	3.2e-24
>prophage 195
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2753681	2756680	2948281		Indivirus(50.0%)	4	NA	NA
WP_001013476.1|2753681_2754641_+	cation transporter	NA	A0A1V0SED0	Indivirus	33.6	2.8e-10
WP_000356967.1|2754702_2754906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171926.1|2755085_2755598_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000590840.1|2755939_2756680_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.6	6.5e-39
>prophage 196
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2760216	2770500	2948281		Catovirus(50.0%)	3	NA	NA
WP_000706134.1|2760216_2761242_+	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
WP_000826855.1|2761627_2762878_+	MFS transporter	NA	NA	NA	NA	NA
WP_000605273.1|2763324_2770500_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	3.4e-68
>prophage 197
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2775358	2776543	2948281		Klosneuvirus(100.0%)	1	NA	NA
WP_001084444.1|2775358_2776543_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.6	2.4e-35
>prophage 198
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2792634	2794227	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_000067363.1|2792634_2794227_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	5.4e-22
>prophage 199
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2802038	2804097	2948281		Pontimonas_phage(50.0%)	2	NA	NA
WP_000166911.1|2802038_2802617_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	43.0	1.6e-13
WP_000818914.1|2802999_2804097_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
>prophage 200
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2814408	2819767	2948281		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000127979.1|2814408_2815965_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
WP_000837114.1|2815961_2816930_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000894660.1|2817517_2819767_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
>prophage 201
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2830890	2832396	2948281		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008409.1|2830890_2832396_-	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.5	1.7e-38
>prophage 202
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2842081	2843611	2948281		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|2842081_2843611_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 203
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2850827	2851871	2948281		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645611.1|2850827_2851871_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
>prophage 204
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2861740	2866284	2948281		Catovirus(50.0%)	3	NA	NA
WP_000975347.1|2861740_2863465_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000608835.1|2863604_2864279_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925396.1|2864544_2866284_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
>prophage 205
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2872792	2874229	2948281		Pandoravirus(100.0%)	1	NA	NA
WP_000163995.1|2872792_2874229_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
>prophage 206
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2883036	2884698	2948281		Arthrobacter_phage(50.0%)	2	NA	NA
WP_000736790.1|2883036_2883987_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570080.1|2884038_2884698_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
>prophage 207
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2895302	2899751	2948281		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549309.1|2895302_2899751_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
>prophage 208
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2913803	2914481	2948281		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911024.1|2913803_2914481_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.2e-31
>prophage 209
NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2948281	2928654	2947718	2948281	integrase	Staphylococcus_phage(86.05%)	43	2916456:2916470	2930297:2930311
2916456:2916470	attL	TTTATGAATTTGGAT	NA	NA	NA	NA
WP_000264185.1|2928654_2929860_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.8	2.9e-222
WP_000191459.1|2929969_2930584_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
2930297:2930311	attR	TTTATGAATTTGGAT	NA	NA	NA	NA
WP_001013104.1|2930580_2930727_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705240.1|2930763_2930946_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_160200044.1|2931144_2931915_-	helix-turn-helix domain-containing protein	NA	A0A1X9H0P5	Staphylococcus_phage	97.7	8.3e-138
WP_000338187.1|2932074_2932296_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_000435345.1|2932319_2932766_+	hypothetical protein	NA	A0A1X9H091	Staphylococcus_phage	99.3	7.3e-78
WP_001156085.1|2932782_2932983_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	51.8	2.2e-05
WP_000801112.1|2932966_2933221_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	76.0	3.6e-29
WP_001148541.1|2933280_2934057_+	transcriptional regulator	NA	A0A2D1G5J2	Staphylococcus_phage	87.2	2.2e-122
WP_160200045.1|2934070_2934286_+	pathogenicity island protein	NA	Q4ZCA9	Staphylococcus_virus	58.6	1.1e-12
WP_000939500.1|2934338_2934479_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.4e-16
WP_001814660.1|2934493_2935126_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	92.4	7.6e-105
WP_001025595.1|2935181_2935508_+	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001038398.1|2935504_2935723_+	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
WP_001124198.1|2935752_2936016_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001837399.1|2936027_2936198_+	DUF1270 domain-containing protein	NA	E9LT78	Staphylococcus_phage	100.0	2.5e-23
WP_031838381.1|2936202_2936517_+	hypothetical protein	NA	I1W620	Staphylococcus_phage	99.0	4.8e-52
WP_031871916.1|2936580_2936841_+	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	97.7	5.8e-43
WP_000002516.1|2936855_2937335_+	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_001288250.1|2937334_2938108_+	AAA family ATPase	NA	A0ZS20	Staphylococcus_virus	100.0	2.1e-141
WP_000704705.1|2938137_2938689_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_073396995.1|2938701_2939394_+	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	99.6	1.4e-131
WP_160200009.1|2939365_2940169_+	replication protein	NA	A0A1X9H0K3	Staphylococcus_phage	99.6	8.7e-114
WP_000803070.1|2940178_2940958_+	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	100.0	1.4e-145
WP_000256597.1|2940951_2941110_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123688.1|2941122_2941344_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049786.1|2941354_2941759_+	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	98.5	3.5e-71
WP_001187250.1|2941763_2941949_+	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	98.4	1.6e-26
WP_000101252.1|2941949_2942255_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029372.1|2942382_2942742_+	hypothetical protein	NA	A0A0E3T8L4	Staphylococcus_phage	99.2	5.9e-62
WP_001126839.1|2942742_2942991_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_001065110.1|2943005_2943257_+	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
WP_000454994.1|2943420_2943702_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_001061840.1|2943878_2944412_+	hypothetical protein	NA	Q4ZBS9	Staphylococcus_virus	98.9	5.1e-94
WP_001209216.1|2944448_2944622_+	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_000195761.1|2944638_2944875_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	100.0	9.6e-37
WP_000483477.1|2944899_2945136_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000595234.1|2945128_2945278_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	6.3e-18
WP_000265041.1|2946085_2946286_+	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000282748.1|2946308_2946779_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
WP_000406186.1|2946893_2947346_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	88.0	3.3e-70
WP_102785854.1|2947361_2947718_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	72.0	6.3e-48
