assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	1	513475-513559	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	513501-513533|513501-513533	NZ_CP047782.1_749823-749855|NZ_CP047782.1_2133457-2133425	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP047782.1_511915_512014_+,NA	NA|357aa|up_9|NZ_CP047782.1_501924_502995_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP047782.1_503312_504368_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP047782.1_504531_505173_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP047782.1_505316_506183_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP047782.1_506546_507629_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP047782.1_507621_508296_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP047782.1_508356_508929_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP047782.1_509342_511874_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP047782.1_511915_512014_+	NA	NA|370aa|up_0|NZ_CP047782.1_512188_513299_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP047782.1_514067_514907_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP047782.1_515080_515731_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP047782.1_515727_515964_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP047782.1_516232_518218_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP047782.1_518225_521072_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP047782.1_521624_522557_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP047782.1_522562_523405_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP047782.1_523412_523898_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP047782.1_523905_525345_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP047782.1_525411_526347_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	2	573835-573914	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP047782.1_566809_567370_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP047782.1_567442_568060_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP047782.1_568215_568710_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP047782.1_569108_569531_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP047782.1_569678_570395_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP047782.1_570477_571017_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP047782.1_571166_571487_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP047782.1_571630_571987_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP047782.1_572144_572525_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP047782.1_572702_573581_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047782.1_574171_574558_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047782.1_574550_574847_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047782.1_575096_576122_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047782.1_576114_576810_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047782.1_576827_577649_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP047782.1_578465_578660_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP047782.1_578893_579745_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP047782.1_580072_580834_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP047782.1_580931_582239_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP047782.1_582353_583595_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	3	967566-967658	3	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP047782.1_957440_958085_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047782.1_958091_958733_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047782.1_959113_959302_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047782.1_959744_960119_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047782.1_960133_961780_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047782.1_961969_964030_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047782.1_964232_964805_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047782.1_964809_965796_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047782.1_965788_966715_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047782.1_966707_967442_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047782.1_967747_967981_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047782.1_968096_968828_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047782.1_968974_972541_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047782.1_972540_973791_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047782.1_973777_974110_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047782.1_974135_975503_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047782.1_975937_976213_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047782.1_976400_976904_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047782.1_976903_977641_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047782.1_977743_978094_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	4	1692257-1692384	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP047782.1_1684416_1684812_-,NA|51aa|up_6|NZ_CP047782.1_1685412_1685565_-,NA	NA|274aa|up_9|NZ_CP047782.1_1681558_1682380_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047782.1_1682835_1684221_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047782.1_1684416_1684812_-	NA	NA|51aa|up_6|NZ_CP047782.1_1685412_1685565_-	NA	NA|200aa|up_5|NZ_CP047782.1_1685589_1686189_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047782.1_1686347_1686818_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047782.1_1686822_1687965_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047782.1_1688100_1688829_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047782.1_1688815_1690273_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047782.1_1690531_1691593_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047782.1_1700421_1700868_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047782.1_1700964_1701915_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047782.1_1701920_1702376_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047782.1_1702456_1703746_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047782.1_1704038_1705133_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP047782.1_1705323_1707060_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP047782.1_1707350_1707893_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP047782.1_1708195_1709233_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP047782.1_1709384_1710362_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP047782.1_1710622_1711459_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	5	1781394-1781475	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	CCAACTTACATTGTCTGTAGAATTTC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP047782.1_1772836_1772947_-,NA|31aa|up_5|NZ_CP047782.1_1775952_1776045_-,NA|49aa|down_0|NZ_CP047782.1_1781868_1782015_-	NA|37aa|up_9|NZ_CP047782.1_1772836_1772947_-	NA	NA|244aa|up_8|NZ_CP047782.1_1773032_1773764_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP047782.1_1773765_1775079_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP047782.1_1775370_1775871_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP047782.1_1775952_1776045_-	NA	DEDDh|185aa|up_4|NZ_CP047782.1_1776261_1776816_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP047782.1_1776882_1777953_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP047782.1_1778199_1778730_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP047782.1_1778899_1780261_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP047782.1_1780341_1781289_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP047782.1_1781868_1782015_-	NA	NA|476aa|down_1|NZ_CP047782.1_1782053_1783481_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP047782.1_1783493_1784951_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP047782.1_1784952_1785255_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP047782.1_1785622_1787161_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP047782.1_1787249_1788449_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP047782.1_1788461_1790465_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP047782.1_1790468_1792661_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP047782.1_1792657_1793350_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP047782.1_1793532_1793835_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	6	1848169-1848257	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|114aa|up_9|NZ_CP047782.1_1841705_1842047_-,NA|127aa|up_7|NZ_CP047782.1_1843220_1843601_-,NA|128aa|up_4|NZ_CP047782.1_1846885_1847269_-,NA|68aa|up_3|NZ_CP047782.1_1847270_1847474_-,NA|52aa|up_2|NZ_CP047782.1_1847458_1847614_-,NA	NA|114aa|up_9|NZ_CP047782.1_1841705_1842047_-	NA	NA|214aa|up_8|NZ_CP047782.1_1842582_1843224_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP047782.1_1843220_1843601_-	NA	NA|290aa|up_6|NZ_CP047782.1_1845634_1846504_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP047782.1_1846567_1846885_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP047782.1_1846885_1847269_-	NA	NA|68aa|up_3|NZ_CP047782.1_1847270_1847474_-	NA	NA|52aa|up_2|NZ_CP047782.1_1847458_1847614_-	NA	NA|106aa|up_1|NZ_CP047782.1_1847610_1847928_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP047782.1_1847932_1848151_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP047782.1_1848323_1848998_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP047782.1_1849011_1850184_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP047782.1_1850252_1851869_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP047782.1_1851944_1852229_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP047782.1_1852403_1853147_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|NZ_CP047782.1_1853171_1854386_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP047782.1_1854582_1855209_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP047782.1_1855569_1856355_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP047782.1_1856956_1857091_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP047782.1_1857326_1857890_+	smart00793, AgrB, Accessory gene regulator B
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	7	2059166-2059291	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP047782.1_2049572_2049740_+,NA|61aa|up_1|NZ_CP047782.1_2058088_2058271_-,NA	NA|139aa|up_9|NZ_CP047782.1_2048913_2049330_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP047782.1_2049572_2049740_+	NA	NA|809aa|up_7|NZ_CP047782.1_2049736_2052163_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP047782.1_2052222_2053077_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP047782.1_2053287_2054103_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP047782.1_2054397_2054823_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP047782.1_2055213_2055918_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP047782.1_2055954_2057619_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP047782.1_2058088_2058271_-	NA	NA|60aa|up_0|NZ_CP047782.1_2058920_2059100_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP047782.1_2059348_2060785_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP047782.1_2061133_2061532_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP047782.1_2061545_2061983_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP047782.1_2062231_2063026_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP047782.1_2063030_2063837_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP047782.1_2063826_2064687_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP047782.1_2064683_2065493_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP047782.1_2065868_2067436_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP047782.1_2067688_2068057_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP047782.1_2068073_2069018_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	8	2099173-2099253	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	7	2099198-2099228|2099198-2099228|2099198-2099228|2099198-2099228|2099198-2099228|2099198-2099228|2099198-2099228	NZ_CP047782.1_776043-776073|NZ_CP047782.1_1394327-1394357|NZ_CP047782.1_2566385-2566415|NZ_CP047782.1_526833-526863|NZ_CP047782.1_1770894-1770924|NZ_CP047782.1_578147-578117|NZ_CP047782.1_622978-622948	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP047782.1_2089702_2089867_+,NA|106aa|up_8|NZ_CP047782.1_2090111_2090429_+,NA|84aa|up_5|NZ_CP047782.1_2095553_2095805_+,NA|57aa|up_0|NZ_CP047782.1_2098945_2099116_+,NA	NA|55aa|up_9|NZ_CP047782.1_2089702_2089867_+	NA	NA|106aa|up_8|NZ_CP047782.1_2090111_2090429_+	NA	NA|1056aa|up_7|NZ_CP047782.1_2090615_2093783_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047782.1_2093899_2095165_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047782.1_2095553_2095805_+	NA	NA|255aa|up_4|NZ_CP047782.1_2095796_2096561_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047782.1_2096723_2097164_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047782.1_2097156_2098368_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047782.1_2098469_2098820_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047782.1_2098945_2099116_+	NA	NA|341aa|down_0|NZ_CP047782.1_2099396_2100419_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047782.1_2100438_2101038_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047782.1_2101044_2101278_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047782.1_2101283_2101730_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047782.1_2101743_2102229_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047782.1_2102225_2103485_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047782.1_2103547_2104042_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047782.1_2104043_2104550_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047782.1_2104578_2105583_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047782.1_2105750_2106356_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009912475.1_ASM991247v1	NZ_CP047782	Staphylococcus aureus strain UP_1352 chromosome, complete genome	9	2566321-2566406	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	2566351-2566376|2566351-2566376|2566351-2566376|2566351-2566376	NZ_CP047782.1_2874330-2874305|NZ_CP047782.1_573891-573916|NZ_CP047782.1_1873898-1873873|NZ_CP047782.1_1933924-1933899	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|64aa|up_6|NZ_CP047782.1_2561309_2561501_+,NA|166aa|up_5|NZ_CP047782.1_2562587_2563085_-,NA|64aa|up_4|NZ_CP047782.1_2563541_2563733_+,NA	NA|267aa|up_9|NZ_CP047782.1_2556697_2557498_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|171aa|up_8|NZ_CP047782.1_2557785_2558298_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|627aa|up_7|NZ_CP047782.1_2559336_2561217_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP047782.1_2561309_2561501_+	NA	NA|166aa|up_5|NZ_CP047782.1_2562587_2563085_-	NA	NA|64aa|up_4|NZ_CP047782.1_2563541_2563733_+	NA	NA|67aa|up_3|NZ_CP047782.1_2564124_2564325_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP047782.1_2564451_2565021_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP047782.1_2565280_2565676_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP047782.1_2565743_2566097_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP047782.1_2566706_2567546_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP047782.1_2567588_2568308_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP047782.1_2568307_2570185_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP047782.1_2570251_2571631_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP047782.1_2571774_2572128_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP047782.1_2572248_2572386_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|454aa|down_6|NZ_CP047782.1_2573116_2574478_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|378aa|down_7|NZ_CP047782.1_2574755_2575889_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|82aa|down_8|NZ_CP047782.1_2576269_2576515_+	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|371aa|down_9|NZ_CP047782.1_2576511_2577624_+	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein
