assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	1	913692-913783	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|32aa|up_5|NZ_CP047786.1_906815_906911_+,NA|36aa|down_3|NZ_CP047786.1_919086_919194_-,NA|359aa|down_8|NZ_CP047786.1_922221_923298_-	NA|272aa|up_9|NZ_CP047786.1_901297_902113_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_CP047786.1_902112_903879_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_CP047786.1_903930_904545_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_CP047786.1_904868_906650_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_CP047786.1_906815_906911_+	NA	NA|105aa|up_4|NZ_CP047786.1_906973_907288_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP047786.1_907460_909809_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP047786.1_909818_911531_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP047786.1_911603_912125_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP047786.1_912125_912392_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP047786.1_914266_916669_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP047786.1_916668_917727_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP047786.1_918107_918848_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|36aa|down_3|NZ_CP047786.1_919086_919194_-	NA	NA|108aa|down_4|NZ_CP047786.1_919230_919554_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_5|NZ_CP047786.1_919572_920307_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_6|NZ_CP047786.1_920368_921337_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_7|NZ_CP047786.1_921346_922225_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_8|NZ_CP047786.1_922221_923298_-	NA	NA|228aa|down_9|NZ_CP047786.1_923297_923981_-	TIGR03656, IsdC, heme uptake protein IsdC
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	2	1002793-1002885	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTTACAACTTTTAGTTGTTAGGGGATTTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|432aa|up_1|NZ_CP047786.1_1001201_1002497_-,NA|45aa|up_0|NZ_CP047786.1_1002648_1002783_+,NA	NA|221aa|up_9|NZ_CP047786.1_993027_993690_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|340aa|up_8|NZ_CP047786.1_993822_994842_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|454aa|up_7|NZ_CP047786.1_994838_996200_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|78aa|up_6|NZ_CP047786.1_996397_996631_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|573aa|up_5|NZ_CP047786.1_996867_998586_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|89aa|up_4|NZ_CP047786.1_998588_998855_-	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|181aa|up_3|NZ_CP047786.1_999008_999551_-	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|391aa|up_2|NZ_CP047786.1_999604_1000777_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|432aa|up_1|NZ_CP047786.1_1001201_1002497_-	NA	NA|45aa|up_0|NZ_CP047786.1_1002648_1002783_+	NA	NA|192aa|down_0|NZ_CP047786.1_1003366_1003942_+	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|467aa|down_1|NZ_CP047786.1_1003956_1005357_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|269aa|down_2|NZ_CP047786.1_1005349_1006156_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|416aa|down_3|NZ_CP047786.1_1006420_1007668_-	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|493aa|down_4|NZ_CP047786.1_1007689_1009168_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|189aa|down_5|NZ_CP047786.1_1009182_1009749_-	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|343aa|down_6|NZ_CP047786.1_1009751_1010780_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|495aa|down_7|NZ_CP047786.1_1010772_1012257_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|730aa|down_8|NZ_CP047786.1_1012235_1014425_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|224aa|down_9|NZ_CP047786.1_1014417_1015089_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	3	1135713-1135794	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047786.1_1119756_1120659_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047786.1_1120824_1124478_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047786.1_1124478_1127955_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047786.1_1128114_1128690_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047786.1_1128705_1129230_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047786.1_1129234_1129810_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047786.1_1130134_1131466_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047786.1_1131816_1133022_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047786.1_1133011_1134391_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047786.1_1134632_1135562_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047786.1_1135951_1137196_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047786.1_1137304_1138495_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047786.1_1138802_1139930_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047786.1_1140291_1140669_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047786.1_1141084_1141678_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047786.1_1141741_1142125_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047786.1_1142255_1144661_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047786.1_1144653_1145082_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047786.1_1145093_1145423_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047786.1_1145415_1146912_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	4	1220484-1220566	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1220510-1220540|1220510-1220540	NZ_CP047786.1_230578-230548|NZ_CP047786.1_992863-992893	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|153aa|up_6|NZ_CP047786.1_1212027_1212486_-,NA	NA|791aa|up_9|NZ_CP047786.1_1208465_1210838_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP047786.1_1210871_1211612_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP047786.1_1211727_1211961_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP047786.1_1212027_1212486_-	NA	NA|435aa|up_5|NZ_CP047786.1_1212825_1214130_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP047786.1_1214259_1215777_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP047786.1_1215779_1216541_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP047786.1_1216662_1217853_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP047786.1_1217991_1219002_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP047786.1_1219054_1220068_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP047786.1_1220768_1221398_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP047786.1_1222100_1223003_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP047786.1_1223245_1223833_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP047786.1_1224396_1225341_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP047786.1_1225451_1226447_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP047786.1_1226443_1227355_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP047786.1_1228179_1229115_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP047786.1_1229181_1230621_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP047786.1_1230628_1231114_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP047786.1_1231121_1231961_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	5	1389550-1389640	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CTTTAGCGATTAGAGGCTTTTATGCAGTTG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP047786.1_1384452_1385169_-,NA|169aa|up_4|NZ_CP047786.1_1385330_1385837_-,NA	NA|75aa|up_9|NZ_CP047786.1_1380567_1380792_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047786.1_1380992_1381922_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047786.1_1382869_1383244_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047786.1_1383495_1384284_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047786.1_1384452_1385169_-	NA	NA|169aa|up_4|NZ_CP047786.1_1385330_1385837_-	NA	NA|267aa|up_3|NZ_CP047786.1_1385972_1386773_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047786.1_1386756_1387476_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047786.1_1387530_1388481_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047786.1_1388629_1389457_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047786.1_1389766_1390402_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047786.1_1390735_1392397_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047786.1_1392393_1392777_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_CP047786.1_1393085_1394096_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_CP047786.1_1394594_1395116_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_CP047786.1_1395143_1396439_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_CP047786.1_1396478_1396955_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_CP047786.1_1397123_1397660_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_CP047786.1_1397870_1398809_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|211aa|down_9|NZ_CP047786.1_1399256_1399889_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	6	1631089-1631190	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|74aa|up_9|NZ_CP047786.1_1620309_1620531_+,NA|131aa|up_8|NZ_CP047786.1_1620552_1620945_+,NA|221aa|up_1|NZ_CP047786.1_1629335_1629998_+,NA|34aa|down_0|NZ_CP047786.1_1631862_1631964_-,NA|93aa|down_5|NZ_CP047786.1_1638327_1638606_+,NA|128aa|down_7|NZ_CP047786.1_1639560_1639944_+,NA|76aa|down_9|NZ_CP047786.1_1640768_1640996_+	NA|74aa|up_9|NZ_CP047786.1_1620309_1620531_+	NA	NA|131aa|up_8|NZ_CP047786.1_1620552_1620945_+	NA	NA|369aa|up_7|NZ_CP047786.1_1621739_1622846_-	pfam07751, Abi_2, Abi-like protein	NA|514aa|up_6|NZ_CP047786.1_1623356_1624898_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047786.1_1624922_1626389_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047786.1_1626426_1627695_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047786.1_1627694_1628273_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047786.1_1628785_1629193_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047786.1_1629335_1629998_+	NA	NA|319aa|up_0|NZ_CP047786.1_1630115_1631072_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP047786.1_1631862_1631964_-	NA	NA|463aa|down_1|NZ_CP047786.1_1632048_1633437_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047786.1_1633516_1634272_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047786.1_1634763_1635333_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047786.1_1635348_1636872_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|93aa|down_5|NZ_CP047786.1_1638327_1638606_+	NA	NA|209aa|down_6|NZ_CP047786.1_1638678_1639305_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP047786.1_1639560_1639944_+	NA	NA|194aa|down_8|NZ_CP047786.1_1640009_1640591_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|76aa|down_9|NZ_CP047786.1_1640768_1640996_+	NA
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	7	1867082-1867163	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	1867106-1867139|1867106-1867139	NZ_CP047786.1_589851-589818|NZ_CP047786.1_680463-680496	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_0|NZ_CP047786.1_1866814_1867018_+,NA|402aa|down_9|NZ_CP047786.1_1876811_1878017_-	NA|2392aa|up_9|NZ_CP047786.1_1851221_1858397_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP047786.1_1858843_1860094_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP047786.1_1860477_1861503_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP047786.1_1861675_1862035_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP047786.1_1862251_1863283_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP047786.1_1863295_1864057_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|325aa|up_3|NZ_CP047786.1_1864053_1865028_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP047786.1_1865041_1865782_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP047786.1_1866123_1866636_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP047786.1_1866814_1867018_+	NA	NA|320aa|down_0|NZ_CP047786.1_1867311_1868271_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP047786.1_1868917_1870405_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP047786.1_1870831_1871215_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP047786.1_1871221_1871548_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP047786.1_1871612_1872758_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP047786.1_1872834_1874097_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP047786.1_1874150_1875038_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP047786.1_1875037_1875595_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP047786.1_1875605_1876811_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|402aa|down_9|NZ_CP047786.1_1876811_1878017_-	NA
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	8	2620827-2620917	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|34aa|up_2|NZ_CP047786.1_2618173_2618275_-,NA|35aa|up_0|NZ_CP047786.1_2620386_2620491_+,NA|364aa|down_0|NZ_CP047786.1_2620933_2622025_-,NA|77aa|down_5|NZ_CP047786.1_2625814_2626045_+	NA|369aa|up_9|NZ_CP047786.1_2607796_2608903_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP047786.1_2608902_2609337_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP047786.1_2609348_2611481_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP047786.1_2611515_2613054_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP047786.1_2613734_2615540_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP047786.1_2615771_2616554_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP047786.1_2616621_2617479_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|34aa|up_2|NZ_CP047786.1_2618173_2618275_-	NA	NA|379aa|up_1|NZ_CP047786.1_2618563_2619700_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047786.1_2620386_2620491_+	NA	NA|364aa|down_0|NZ_CP047786.1_2620933_2622025_-	NA	NA|327aa|down_1|NZ_CP047786.1_2622290_2623271_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047786.1_2623272_2623593_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047786.1_2623744_2624410_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047786.1_2624845_2625784_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047786.1_2625814_2626045_+	NA	NA|458aa|down_6|NZ_CP047786.1_2626716_2628090_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047786.1_2628547_2628961_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047786.1_2629160_2629604_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047786.1_2629724_2630435_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009912535.1_ASM991253v1	NZ_CP047786	Staphylococcus aureus strain UP_1150 chromosome, complete genome	9	2747850-2747939	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|49aa|down_2|NZ_CP047786.1_2748492_2748639_+,NA|70aa|down_3|NZ_CP047786.1_2748631_2748841_+,NA|121aa|down_7|NZ_CP047786.1_2751861_2752224_+,NA|88aa|down_8|NZ_CP047786.1_2752225_2752489_+	NA|190aa|up_9|NZ_CP047786.1_2738204_2738774_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_8|NZ_CP047786.1_2739009_2739144_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|270aa|up_7|NZ_CP047786.1_2739720_2740530_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP047786.1_2740890_2741517_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|407aa|up_5|NZ_CP047786.1_2741713_2742934_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP047786.1_2742958_2743702_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP047786.1_2743877_2744162_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP047786.1_2744237_2745854_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP047786.1_2745922_2747095_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP047786.1_2747108_2747783_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP047786.1_2747955_2748174_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP047786.1_2748178_2748496_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|NZ_CP047786.1_2748492_2748639_+	NA	NA|70aa|down_3|NZ_CP047786.1_2748631_2748841_+	NA	NA|107aa|down_4|NZ_CP047786.1_2748843_2749164_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|NZ_CP047786.1_2749227_2750097_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|490aa|down_6|NZ_CP047786.1_2750113_2751583_+	pfam05272, VirE, Virulence-associated protein E	NA|121aa|down_7|NZ_CP047786.1_2751861_2752224_+	NA	NA|88aa|down_8|NZ_CP047786.1_2752225_2752489_+	NA	NA|214aa|down_9|NZ_CP047786.1_2752490_2753132_+	pfam16560, SAPI, Putative mobile pathogenicity island
