The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	0	24769	2774422	portal,protease,terminase,tail,holin,head,capsid	Staphylococcus_phage(100.0%)	29	NA	NA
WP_160193032.1|0_1695_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000644965.1|1669_1909_+	membrane protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
WP_011447040.1|1974_3165_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000032525.1|3157_3742_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000849950.1|3829_5077_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_001252099.1|5112_5271_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177486.1|5279_5612_+|head,tail	phage head-tail adapter protein	head,tail	A0A1W6JPZ6	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|5598_5934_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501244.1|5933_6311_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000611452.1|6307_6688_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000570652.1|6688_7642_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442601.1|7706_8153_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570353.1|8212_8335_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_001133528.1|8390_13043_+|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
WP_029549971.1|13042_14533_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	99.8	8.2e-299
WP_047230708.1|14548_18334_+	phage minor structural protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.6	0.0e+00
WP_001153681.1|18323_18476_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18522_18810_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18867_19164_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|19313_19490_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19542_19650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19701_19956_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19967_20723_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920037.1|20913_21405_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
WP_020444758.1|21931_22390_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727643.1|22484_22934_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000702262.1|23615_23966_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24018_24279_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24589_24769_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	155447	242204	2774422	protease,tRNA,transposase	Staphylococcus_phage(93.33%)	84	NA	NA
WP_001792814.1|155447_155576_-|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	66.7	6.6e-08
WP_000209099.1|155753_156542_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
WP_078056058.1|158606_159143_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	9.9e-29
WP_000746375.1|159123_159627_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001255379.1|159735_160092_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000810443.1|160147_160738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000247467.1|160744_161791_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000681154.1|161780_163628_-	membrane protein	NA	NA	NA	NA	NA
WP_001251190.1|163632_164991_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.7	2.0e-41
WP_000453449.1|165053_165320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031902.1|165557_166034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049261.1|166206_168702_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358144.1|168736_169120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000015639.1|169131_169392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000692002.1|169396_170452_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000173102.1|170512_171604_-	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_000386891.1|171778_172081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000805734.1|172094_172415_-	DUF961 domain-containing protein	NA	NA	NA	NA	NA
WP_000134542.1|172565_172850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000782463.1|173358_174342_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000416758.1|174764_174908_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
WP_000416756.1|175643_175787_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_031918769.1|175851_178845_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.2	0.0e+00
WP_000566594.1|178837_180082_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.5e-237
WP_000504439.1|180097_180616_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|180625_181999_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|182021_182714_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|182710_183472_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|183468_184167_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092753.1|184640_185207_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	7.3e-99
WP_025174267.1|186169_186877_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	3.9e-126
WP_001039443.1|187001_187724_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	1.9e-131
WP_001038869.1|187781_188501_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	6.0e-130
WP_001038694.1|188621_189341_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	1.2e-127
WP_102957303.1|189289_189397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|189498_190215_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038689.1|190364_191084_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	3.2e-131
WP_000028583.1|191449_193006_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.1	3.0e-288
WP_047230715.1|192998_194228_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.2	5.8e-133
WP_001792025.1|195303_195405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|195527_195623_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414215.1|196978_197551_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627537.1|197651_197993_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000669026.1|198033_198660_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.2	3.5e-94
WP_000070641.1|198734_199730_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	7.9e-72
WP_072470537.1|199810_200461_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.7	1.8e-32
WP_072470673.1|200763_201219_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
WP_000348370.1|201377_202856_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	6.9e-282
WP_000778534.1|202860_203862_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	7.7e-184
WP_000718107.1|203858_204116_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|204181_204655_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_072470674.1|204659_205406_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	8.3e-143
WP_000109906.1|205783_207376_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|207746_208940_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366155.1|209064_209973_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453312.1|210184_211018_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	2.1e-158
WP_000623479.1|211401_211755_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	92.3	8.2e-16
WP_001200540.1|211751_212117_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	4.8e-59
WP_000091442.1|212372_212675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|212934_213648_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|214087_214723_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030463.1|215018_215462_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	100.0	3.7e-58
WP_001153742.1|215448_215892_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|216004_216475_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|216673_216898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|217173_218028_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|218322_218718_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989120.1|218735_220028_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000221185.1|220027_220342_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	4.4e-53
WP_160193038.1|220865_222368_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_025174259.1|222860_223892_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
WP_000493888.1|223898_224531_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_001159033.1|224541_225723_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	5.1e-227
WP_001008551.1|225735_226200_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|226321_227323_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001790712.1|227434_227554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|227556_228384_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|228954_229356_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|229475_230039_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|230035_230989_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|231098_232280_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108734.1|232570_234985_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836465.1|235006_235318_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050510.1|235643_242204_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.0	1.3e-303
>prophage 3
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	366525	375568	2774422	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|366525_367530_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|367531_368557_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|368579_369719_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|369737_369998_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|370272_372552_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_031918693.1|372754_375028_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
WP_000364545.1|375049_375568_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	6.2e-28
>prophage 4
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	443402	451714	2774422	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217262.1|443402_445202_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
WP_160193045.1|445425_446532_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|446662_447340_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683930.1|447342_448443_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|448556_449903_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|449912_450803_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|450928_451714_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	988868	997341	2774422		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|988868_989435_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030821.1|989437_990466_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	2.9e-61
WP_000483713.1|990458_991943_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032746.1|991921_994111_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_000666799.1|994103_994775_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|994776_995040_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|995039_995744_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|995747_996872_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861574.1|996858_997341_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 6
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	1017315	1050623	2774422	transposase,protease,bacteriocin	Enterococcus_phage(16.67%)	36	NA	NA
WP_001089097.1|1017315_1018497_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|1018534_1018864_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1019102_1019924_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150199.1|1019916_1020720_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526683.1|1020706_1022380_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_072353880.1|1022366_1023578_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|1023654_1023759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|1023909_1024848_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|1024899_1025451_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|1025540_1025831_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_072353879.1|1025894_1026026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081352.1|1026071_1027031_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1027518_1027875_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1027963_1028101_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1028241_1028532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1028619_1029261_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668622.1|1029257_1029578_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870802.1|1029580_1031545_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_072470685.1|1031588_1031861_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1031870_1031972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|1032887_1033490_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1033504_1033681_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668823.1|1033879_1034866_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1034946_1035165_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1035374_1035944_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414178.1|1036430_1037942_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|1038080_1039439_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_072470629.1|1039455_1041780_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000928411.1|1041998_1042802_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049957.1|1043103_1044666_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_001795833.1|1044665_1044926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160193060.1|1044906_1046391_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|1046823_1047999_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001794241.1|1047958_1049167_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600390.1|1049279_1049789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251964.1|1050446_1050623_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.9	4.5e-07
>prophage 7
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	1193558	1205734	2774422	capsid,integrase	Staphylococcus_phage(50.0%)	13	1188887:1188901	1202426:1202440
1188887:1188901	attL	ATGGAGACGGCGGGA	NA	NA	NA	NA
WP_000253083.1|1193558_1194050_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
WP_000657544.1|1194232_1195291_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000884055.1|1195277_1195484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081426.1|1195708_1196053_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	5.5e-41
WP_031898814.1|1196725_1199098_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	38.9	4.1e-135
WP_001103961.1|1199189_1199489_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
WP_001058500.1|1199489_1199714_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
WP_000163544.1|1199864_1200083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000583241.1|1200234_1200972_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	31.2	1.2e-05
WP_031898813.1|1200986_1202093_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	6.9e-77
WP_000586155.1|1202104_1202320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085186.1|1202875_1203340_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	99.4	5.6e-81
1202426:1202440	attR	ATGGAGACGGCGGGA	NA	NA	NA	NA
WP_001050054.1|1203361_1205734_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	3.5e-94
>prophage 8
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	1256501	1270788	2774422		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616862.1|1256501_1257263_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	3.8e-18
WP_001245574.1|1257259_1258216_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1258202_1259174_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1259212_1259368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562501.1|1259548_1260520_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	5.5e-171
WP_000855505.1|1260637_1262743_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1262705_1263104_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068504.1|1263904_1264771_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1264790_1265291_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193757.1|1265631_1267137_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031918684.1|1267215_1267317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1267407_1268325_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197271.1|1268892_1269435_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1269729_1270788_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 9
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	1282759	1290579	2774422		Pandoravirus(16.67%)	10	NA	NA
WP_001217793.1|1282759_1283911_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.7e-23
WP_000604514.1|1283894_1284488_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1284838_1285507_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1285508_1285928_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1285931_1286645_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1286743_1287328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093556.1|1287607_1288048_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1288389_1288863_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1288837_1289524_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1289523_1290579_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 10
NZ_CP047835	Staphylococcus aureus strain UP_883 chromosome, complete genome	2774422	2753970	2774420	2774422	terminase,integrase	Staphylococcus_phage(100.0%)	42	2742550:2742566	2765352:2765368
2742550:2742566	attL	GTTTAATAAATGAAAAA	NA	NA	NA	NA
WP_000791404.1|2753970_2755023_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000595401.1|2755044_2756061_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000857176.1|2757442_2758480_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000191459.1|2758587_2759202_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001013104.1|2759198_2759345_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705243.1|2759380_2759563_-	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001089804.1|2759762_2759948_-	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_001083967.1|2760101_2760818_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000639922.1|2760981_2761224_+	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001148565.1|2761239_2762028_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_001148861.1|2762044_2762242_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|2762272_2762413_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|2762427_2763060_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|2763118_2763439_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|2763435_2763597_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291489.1|2763689_2763950_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000815404.1|2763959_2764181_+	DUF2483 domain-containing protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
WP_000137070.1|2764173_2764953_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
WP_000704705.1|2764983_2765535_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
2765352:2765368	attR	TTTTTCATTTATTAAAC	NA	NA	NA	NA
WP_001199416.1|2765547_2766219_+	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
WP_000414755.1|2766357_2766639_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190253.1|2766704_2767475_+	hypothetical protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_000803062.1|2767484_2768264_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256589.1|2768257_2768416_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123674.1|2768428_2768650_+	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
WP_000049804.1|2768660_2769065_+	DUF1064 domain-containing protein	NA	A0A1W6JPX0	Staphylococcus_phage	100.0	3.6e-68
WP_001187234.1|2769069_2769255_+	DUF3113 family protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
WP_001029545.1|2769255_2769627_+	hypothetical protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
WP_001126839.1|2769627_2769876_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_000982695.1|2769939_2770287_+	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
WP_000219085.1|2770283_2770673_+	acetyltransferase	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
WP_001065078.1|2770665_2770920_+	DUF1024 family protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
WP_001795925.1|2770882_2771077_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	95.1	5.9e-24
WP_001066448.1|2771069_2771606_+	hypothetical protein	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
WP_001209216.1|2771642_2771816_+	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_000195759.1|2771832_2772039_+	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
WP_000595265.1|2772035_2772185_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001794311.1|2772184_2772385_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000282749.1|2772407_2772896_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.8e-72
WP_000406194.1|2773010_2773463_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A1W6JQ01	Staphylococcus_phage	100.0	3.6e-80
WP_160193122.1|2773478_2773823_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	99.1	2.1e-64
WP_043951428.1|2773952_2774420_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	99.4	3.3e-81
