assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	1	88579-88707	1,1	PILER-CR,CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	CAGGTTGGCGGGGCCCCAACAAAGA,CAGGTTGGCGGGGCCCCAACACAGA	25,25	2	22	88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88660-88690|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682|88652-88682	NZ_CP047790.1_682479-682449|NZ_CP047790.1_892385-892355|NZ_CP047790.1_1373805-1373775|NZ_CP047790.1_1650460-1650430|NZ_CP047790.1_415080-415110|NZ_CP047790.1_992813-992843|NZ_CP047790.1_2203162-2203192|NZ_CP047790.1_2490565-2490595|NZ_CP047790.1_1161161-1161191|NZ_CP047790.1_1203499-1203529|NZ_CP047790.1_2479648-2479678|NZ_CP047790.1_682479-682449|NZ_CP047790.1_892385-892355|NZ_CP047790.1_1373805-1373775|NZ_CP047790.1_1650460-1650430|NZ_CP047790.1_415080-415110|NZ_CP047790.1_992813-992843|NZ_CP047790.1_2203162-2203192|NZ_CP047790.1_2490565-2490595|NZ_CP047790.1_1161161-1161191|NZ_CP047790.1_1203499-1203529|NZ_CP047790.1_2479648-2479678	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_6|NZ_CP047790.1_83290_83383_+,NA|37aa|up_2|NZ_CP047790.1_86388_86499_+,NA|138aa|up_1|NZ_CP047790.1_86527_86941_+,NA|129aa|down_1|NZ_CP047790.1_89860_90247_+,NA|92aa|down_6|NZ_CP047790.1_94228_94504_-	NA|177aa|up_9|NZ_CP047790.1_80606_81137_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP047790.1_81383_82454_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP047790.1_82520_83075_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP047790.1_83290_83383_+	NA	NA|167aa|up_5|NZ_CP047790.1_83464_83965_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP047790.1_84256_85570_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP047790.1_85571_86303_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP047790.1_86388_86499_+	NA	NA|138aa|up_1|NZ_CP047790.1_86527_86941_+	NA	NA|329aa|up_0|NZ_CP047790.1_87371_88358_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP047790.1_88885_89644_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP047790.1_89860_90247_+	NA	NA|234aa|down_2|NZ_CP047790.1_90261_90963_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP047790.1_90959_92003_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP047790.1_91992_92622_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP047790.1_92733_93951_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP047790.1_94228_94504_-	NA	NA|155aa|down_7|NZ_CP047790.1_94510_94975_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP047790.1_95121_95322_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP047790.1_95324_96581_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	2	892291-892376	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	3	892321-892346|892321-892346|892321-892346	NZ_CP047790.1_682357-682382|NZ_CP047790.1_1161282-1161257|NZ_CP047790.1_1112528-1112553	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|76aa|up_6|NZ_CP047790.1_885089_885317_-,NA|75aa|down_0|NZ_CP047790.1_892559_892784_-,NA|49aa|down_1|NZ_CP047790.1_892740_892887_-,NA|78aa|down_3|NZ_CP047790.1_894995_895229_+,NA|62aa|down_4|NZ_CP047790.1_895850_896036_+,NA|169aa|down_7|NZ_CP047790.1_897835_898342_-,NA|24aa|down_9|NZ_CP047790.1_899390_899462_+	NA|45aa|up_9|NZ_CP047790.1_880384_880519_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP047790.1_883400_883589_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP047790.1_883837_884785_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP047790.1_885089_885317_-	NA	NA|502aa|up_5|NZ_CP047790.1_885623_887129_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP047790.1_887351_888284_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP047790.1_888306_889308_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP047790.1_889745_890471_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP047790.1_890565_891291_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP047790.1_891398_892115_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047790.1_892559_892784_-	NA	NA|49aa|down_1|NZ_CP047790.1_892740_892887_-	NA	NA|320aa|down_2|NZ_CP047790.1_893559_894519_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047790.1_894995_895229_+	NA	NA|62aa|down_4|NZ_CP047790.1_895850_896036_+	NA	NA|117aa|down_5|NZ_CP047790.1_896575_896926_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047790.1_897079_897577_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047790.1_897835_898342_-	NA	NA|132aa|down_8|NZ_CP047790.1_899014_899410_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_9|NZ_CP047790.1_899390_899462_+	NA
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	3	915122-915213	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|32aa|up_5|NZ_CP047790.1_908245_908341_+,NA|36aa|down_3|NZ_CP047790.1_920384_920492_-,NA|359aa|down_8|NZ_CP047790.1_923519_924596_-	NA|272aa|up_9|NZ_CP047790.1_902727_903543_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_CP047790.1_903542_905309_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_CP047790.1_905360_905975_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_CP047790.1_906298_908080_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_CP047790.1_908245_908341_+	NA	NA|105aa|up_4|NZ_CP047790.1_908403_908718_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP047790.1_908890_911239_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP047790.1_911248_912961_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP047790.1_913033_913555_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP047790.1_913555_913822_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP047790.1_915564_917967_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP047790.1_917966_919025_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP047790.1_919404_920145_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|36aa|down_3|NZ_CP047790.1_920384_920492_-	NA	NA|108aa|down_4|NZ_CP047790.1_920528_920852_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_5|NZ_CP047790.1_920870_921605_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_6|NZ_CP047790.1_921666_922635_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_7|NZ_CP047790.1_922644_923523_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_8|NZ_CP047790.1_923519_924596_-	NA	NA|228aa|down_9|NZ_CP047790.1_924595_925279_-	TIGR03656, IsdC, heme uptake protein IsdC
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	4	1112531-1112609	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047790.1_1096478_1097381_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047790.1_1097546_1101200_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047790.1_1101200_1104677_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047790.1_1104836_1105412_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047790.1_1105427_1105952_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047790.1_1105956_1106532_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047790.1_1106856_1108188_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047790.1_1108537_1109743_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047790.1_1109732_1111112_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047790.1_1111353_1112283_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047790.1_1112733_1113978_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047790.1_1114086_1115277_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047790.1_1115584_1116712_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047790.1_1117073_1117451_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047790.1_1117865_1118459_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047790.1_1118522_1118906_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047790.1_1119036_1121442_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047790.1_1121434_1121863_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047790.1_1121874_1122204_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047790.1_1122196_1123693_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	5	1208914-1208991	5	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGGCGGGGCCCCAACATAAAGAA	23	1	9	1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968|1208937-1208968	NZ_CP047790.1_239041-239010|NZ_CP047790.1_1650288-1650257|NZ_CP047790.1_1650343-1650312|NZ_CP047790.1_77908-77939|NZ_CP047790.1_1203386-1203417|NZ_CP047790.1_1373860-1373829|NZ_CP047790.1_1869809-1869778|NZ_CP047790.1_2152680-2152649|NZ_CP047790.1_2479707-2479738	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|36aa|down_5|NZ_CP047790.1_1216431_1216539_-,NA|35aa|down_7|NZ_CP047790.1_1217971_1218076_-	NA|301aa|up_9|NZ_CP047790.1_1197817_1198720_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047790.1_1198962_1199550_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047790.1_1200113_1201058_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047790.1_1201168_1202164_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047790.1_1202160_1203072_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047790.1_1203954_1204890_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047790.1_1204956_1206396_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047790.1_1206403_1206889_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047790.1_1206896_1207736_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047790.1_1207741_1208674_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047790.1_1209279_1212126_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047790.1_1212133_1214119_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047790.1_1214387_1214624_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047790.1_1214620_1215271_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047790.1_1215444_1216284_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047790.1_1216431_1216539_-	NA	NA|370aa|down_6|NZ_CP047790.1_1216692_1217803_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047790.1_1217971_1218076_-	NA	NA|844aa|down_8|NZ_CP047790.1_1218117_1220649_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047790.1_1221062_1221635_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	6	1610315-1610417	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|141aa|up_9|NZ_CP047790.1_1598299_1598722_+,NA|72aa|up_8|NZ_CP047790.1_1599524_1599740_-,NA|131aa|up_7|NZ_CP047790.1_1599777_1600170_+,NA|221aa|up_1|NZ_CP047790.1_1608561_1609224_+,NA|33aa|down_0|NZ_CP047790.1_1611092_1611191_-,NA|93aa|down_5|NZ_CP047790.1_1617554_1617833_+,NA|128aa|down_7|NZ_CP047790.1_1618787_1619171_+,NA|70aa|down_9|NZ_CP047790.1_1619995_1620205_+	NA|141aa|up_9|NZ_CP047790.1_1598299_1598722_+	NA	NA|72aa|up_8|NZ_CP047790.1_1599524_1599740_-	NA	NA|131aa|up_7|NZ_CP047790.1_1599777_1600170_+	NA	NA|514aa|up_6|NZ_CP047790.1_1602582_1604124_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047790.1_1604148_1605615_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047790.1_1605652_1606921_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047790.1_1606920_1607499_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047790.1_1608011_1608419_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047790.1_1608561_1609224_+	NA	NA|319aa|up_0|NZ_CP047790.1_1609341_1610298_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|33aa|down_0|NZ_CP047790.1_1611092_1611191_-	NA	NA|463aa|down_1|NZ_CP047790.1_1611275_1612664_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047790.1_1612743_1613499_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047790.1_1613990_1614560_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047790.1_1614575_1616099_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|93aa|down_5|NZ_CP047790.1_1617554_1617833_+	NA	NA|209aa|down_6|NZ_CP047790.1_1617905_1618532_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP047790.1_1618787_1619171_+	NA	NA|194aa|down_8|NZ_CP047790.1_1619236_1619818_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP047790.1_1619995_1620205_+	NA
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	7	1766090-1766180	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGACAATGCAAGTTGGGGTGTGGGCCC	33	1	18	1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147|1766123-1766147	NZ_CP047790.1_87245-87269|NZ_CP047790.1_415013-415037|NZ_CP047790.1_593875-593899|NZ_CP047790.1_593933-593957|NZ_CP047790.1_992746-992770|NZ_CP047790.1_1203374-1203398|NZ_CP047790.1_1203432-1203456|NZ_CP047790.1_2490615-2490639|NZ_CP047790.1_239053-239029|NZ_CP047790.1_682546-682522|NZ_CP047790.1_1373872-1373848|NZ_CP047790.1_1650300-1650276|NZ_CP047790.1_1650355-1650331|NZ_CP047790.1_1869821-1869797|NZ_CP047790.1_2152692-2152668|NZ_CP047790.1_678032-678056|NZ_CP047790.1_1196233-1196257|NZ_CP047790.1_2479695-2479719	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|49aa|down_4|NZ_CP047790.1_1771763_1771910_-	NA|234aa|up_9|NZ_CP047790.1_1754215_1754917_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|up_8|NZ_CP047790.1_1754909_1755353_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|up_7|NZ_CP047790.1_1755465_1756206_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|up_6|NZ_CP047790.1_1756208_1757948_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|up_5|NZ_CP047790.1_1758206_1758881_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|up_4|NZ_CP047790.1_1759024_1760746_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|up_3|NZ_CP047790.1_1760778_1762467_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|up_2|NZ_CP047790.1_1762488_1763514_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|up_1|NZ_CP047790.1_1763506_1764223_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|390aa|up_0|NZ_CP047790.1_1764498_1765668_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|565aa|down_0|NZ_CP047790.1_1766718_1768413_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|down_1|NZ_CP047790.1_1768434_1769460_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|down_2|NZ_CP047790.1_1769452_1770169_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|348aa|down_3|NZ_CP047790.1_1770696_1771740_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|49aa|down_4|NZ_CP047790.1_1771763_1771910_-	NA	NA|352aa|down_5|NZ_CP047790.1_1771911_1772967_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|420aa|down_6|NZ_CP047790.1_1772984_1774244_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|93aa|down_7|NZ_CP047790.1_1774470_1774749_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|156aa|down_8|NZ_CP047790.1_1774771_1775239_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|699aa|down_9|NZ_CP047790.1_1775223_1777320_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	8	2233556-2233689	2	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_1|NZ_CP047790.1_2230741_2230942_+,NA|34aa|up_0|NZ_CP047790.1_2230990_2231092_+,NA|78aa|down_6|NZ_CP047790.1_2246246_2246480_+,NA|103aa|down_7|NZ_CP047790.1_2246586_2246895_-,NA|89aa|down_8|NZ_CP047790.1_2247038_2247305_-	NA|426aa|up_9|NZ_CP047790.1_2220304_2221582_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047790.1_2222491_2224315_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047790.1_2224453_2224870_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047790.1_2225100_2225793_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047790.1_2225957_2226722_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047790.1_2226875_2227556_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047790.1_2227579_2229133_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047790.1_2229249_2230608_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047790.1_2230741_2230942_+	NA	NA|34aa|up_0|NZ_CP047790.1_2230990_2231092_+	NA	NA|930aa|down_0|NZ_CP047790.1_2234797_2237587_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP047790.1_2237766_2238633_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP047790.1_2238843_2239587_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP047790.1_2239912_2240269_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1372aa|down_4|NZ_CP047790.1_2240573_2244689_+	pfam18483, Bact_lectin, Bacterial lectin	NA|398aa|down_5|NZ_CP047790.1_2245072_2246266_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NZ_CP047790.1_2246246_2246480_+	NA	NA|103aa|down_7|NZ_CP047790.1_2246586_2246895_-	NA	NA|89aa|down_8|NZ_CP047790.1_2247038_2247305_-	NA	NA|603aa|down_9|NZ_CP047790.1_2247588_2249397_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_009912615.1_ASM991261v1	NZ_CP047790	Staphylococcus aureus strain UP_830 chromosome, complete genome	9	2595361-2595451	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_CP047790.1_2594083_2594242_-,NA|35aa|up_0|NZ_CP047790.1_2594921_2595026_+,NA|364aa|down_0|NZ_CP047790.1_2595467_2596559_-,NA|77aa|down_5|NZ_CP047790.1_2600348_2600579_+	NA|2485aa|up_9|NZ_CP047790.1_2575970_2583425_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047790.1_2583743_2584850_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047790.1_2584849_2585284_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047790.1_2585295_2587428_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047790.1_2587462_2589001_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047790.1_2589681_2591487_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047790.1_2591718_2592501_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047790.1_2592568_2593426_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047790.1_2594083_2594242_-	NA	NA|35aa|up_0|NZ_CP047790.1_2594921_2595026_+	NA	NA|364aa|down_0|NZ_CP047790.1_2595467_2596559_-	NA	NA|327aa|down_1|NZ_CP047790.1_2596824_2597805_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047790.1_2597806_2598127_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047790.1_2598278_2598944_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047790.1_2599379_2600318_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047790.1_2600348_2600579_+	NA	NA|458aa|down_6|NZ_CP047790.1_2601250_2602624_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047790.1_2603080_2603494_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047790.1_2603693_2604137_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047790.1_2604257_2604968_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
