assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	1	71373-71564	1	CRT	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	GGTGGGGCCCNCAACANAGANN	22	1	8	71452-71485|71452-71485|71452-71485|71452-71485|71452-71485|71452-71485|71452-71485|71452-71485	NZ_CP047793.1_294421-294388|NZ_CP047793.1_992199-992232|NZ_CP047793.1_1251572-1251605|NZ_CP047793.1_1284756-1284723|NZ_CP047793.1_1724262-1724229|NZ_CP047793.1_1799019-1798986|NZ_CP047793.1_2389633-2389600|NZ_CP047793.1_2531526-2531559	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|49aa|up_0|NZ_CP047793.1_70921_71068_+,NA|31aa|down_5|NZ_CP047793.1_76949_77042_+,NA|37aa|down_9|NZ_CP047793.1_80047_80158_+	NA|101aa|up_9|NZ_CP047793.1_59102_59405_+	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_8|NZ_CP047793.1_59587_60280_+	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|731aa|up_7|NZ_CP047793.1_60276_62469_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|668aa|up_6|NZ_CP047793.1_62472_64476_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|400aa|up_5|NZ_CP047793.1_64488_65688_+	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|513aa|up_4|NZ_CP047793.1_65776_67315_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|101aa|up_3|NZ_CP047793.1_67681_67984_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_2|NZ_CP047793.1_67985_69443_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_1|NZ_CP047793.1_69455_70883_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|49aa|up_0|NZ_CP047793.1_70921_71068_+	NA	NA|316aa|down_0|NZ_CP047793.1_71705_72653_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|down_1|NZ_CP047793.1_72733_74095_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|down_2|NZ_CP047793.1_74264_74795_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|down_3|NZ_CP047793.1_75041_76112_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|down_4|NZ_CP047793.1_76178_76733_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|down_5|NZ_CP047793.1_76949_77042_+	NA	NA|167aa|down_6|NZ_CP047793.1_77123_77624_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|down_7|NZ_CP047793.1_77915_79229_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|down_8|NZ_CP047793.1_79230_79962_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|down_9|NZ_CP047793.1_80047_80158_+	NA
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	2	841271-841363	1	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|117aa|up_9|NZ_CP047793.1_830834_831185_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP047793.1_831287_832025_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP047793.1_832024_832528_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP047793.1_832715_832991_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP047793.1_833425_834793_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP047793.1_834818_835151_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP047793.1_835137_836388_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP047793.1_836387_839954_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP047793.1_840100_840832_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP047793.1_840947_841181_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP047793.1_841486_842221_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP047793.1_842213_843140_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP047793.1_843132_844119_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP047793.1_844123_844696_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP047793.1_844898_846959_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP047793.1_847149_848796_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP047793.1_848810_849185_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP047793.1_849627_849816_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP047793.1_850196_850838_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP047793.1_850844_851489_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	3	1144197-1144282	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGGCTTT	30	1	2	1144227-1144252|1144227-1144252	NZ_CP047793.1_2695702-2695727|NZ_CP047793.1_2755786-2755811	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047793.1_1128231_1129134_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047793.1_1129299_1132953_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047793.1_1132953_1136430_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047793.1_1136589_1137165_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047793.1_1137180_1137705_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047793.1_1137709_1138285_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047793.1_1138610_1139942_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047793.1_1140292_1141498_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047793.1_1141487_1142867_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047793.1_1143108_1144038_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047793.1_1144432_1145677_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047793.1_1145785_1146976_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|126aa|down_2|NZ_CP047793.1_1148772_1149150_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_3|NZ_CP047793.1_1149564_1150158_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_4|NZ_CP047793.1_1150221_1150605_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_5|NZ_CP047793.1_1150735_1153141_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_6|NZ_CP047793.1_1153133_1153562_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_7|NZ_CP047793.1_1153573_1153903_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_8|NZ_CP047793.1_1153895_1155392_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|160aa|down_9|NZ_CP047793.1_1155393_1155873_+	TIGR00942, 2a6301s05, Monovalent Cation (K+ or Na+):Proton Antiporter-3 (CPA3) subfamily
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	4	1193324-1193403	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|414aa|up_9|NZ_CP047793.1_1183643_1184885_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047793.1_1184999_1186307_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047793.1_1186404_1187166_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047793.1_1187493_1188345_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047793.1_1188578_1188773_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047793.1_1189588_1190410_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047793.1_1190427_1191123_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047793.1_1191115_1192141_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047793.1_1192390_1192687_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047793.1_1192679_1193066_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047793.1_1193656_1194535_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP047793.1_1194712_1195093_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047793.1_1195250_1195607_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047793.1_1195750_1196071_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047793.1_1196220_1196760_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047793.1_1196842_1197559_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047793.1_1197706_1198129_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047793.1_1198527_1199022_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047793.1_1199177_1199795_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047793.1_1199867_1200428_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	5	1251586-1251670	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1251612-1251644|1251612-1251644	NZ_CP047793.1_2497327-2497295|NZ_CP047793.1_1018415-1018447	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|33aa|down_1|NZ_CP047793.1_1253130_1253229_-	NA|312aa|up_9|NZ_CP047793.1_1238739_1239675_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_8|NZ_CP047793.1_1239741_1241181_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_7|NZ_CP047793.1_1241188_1241674_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|281aa|up_6|NZ_CP047793.1_1241681_1242524_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP047793.1_1242529_1243462_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP047793.1_1244072_1246919_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP047793.1_1246926_1248912_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP047793.1_1249180_1249417_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_1|NZ_CP047793.1_1249413_1250064_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP047793.1_1250237_1251077_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP047793.1_1251845_1252956_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP047793.1_1253130_1253229_-	NA	NA|844aa|down_2|NZ_CP047793.1_1253270_1255802_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP047793.1_1256215_1256788_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP047793.1_1256848_1257523_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_5|NZ_CP047793.1_1257515_1258598_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|289aa|down_6|NZ_CP047793.1_1258961_1259828_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_7|NZ_CP047793.1_1259971_1260613_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_8|NZ_CP047793.1_1260776_1261832_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_9|NZ_CP047793.1_1262149_1263220_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	6	2295478-2295736	1,5	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_0|NZ_CP047793.1_2292764_2292965_+,NA|103aa|down_1|NZ_CP047793.1_2297169_2297478_-,NA|89aa|down_2|NZ_CP047793.1_2297621_2297888_-,NA|41aa|down_8|NZ_CP047793.1_2306209_2306332_-,NA|64aa|down_9|NZ_CP047793.1_2306766_2306958_+	NA|204aa|up_9|NZ_CP047793.1_2281598_2282210_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047793.1_2282760_2284038_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047793.1_2284514_2286338_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047793.1_2286476_2286893_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047793.1_2287123_2287816_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP047793.1_2287980_2288712_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047793.1_2288898_2289579_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047793.1_2289603_2291157_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047793.1_2291273_2292632_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP047793.1_2292764_2292965_+	NA	NA|289aa|down_0|NZ_CP047793.1_2296176_2297043_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047793.1_2297169_2297478_-	NA	NA|89aa|down_2|NZ_CP047793.1_2297621_2297888_-	NA	NA|603aa|down_3|NZ_CP047793.1_2298171_2299980_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047793.1_2300096_2300489_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047793.1_2300490_2303352_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047793.1_2303658_2304432_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_7|NZ_CP047793.1_2305411_2306206_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_8|NZ_CP047793.1_2306209_2306332_-	NA	NA|64aa|down_9|NZ_CP047793.1_2306766_2306958_+	NA
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	7	2375992-2376096	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047793.1_2375632_2375737_+,NA|35aa|down_2|NZ_CP047793.1_2378268_2378373_-	NA|453aa|up_9|NZ_CP047793.1_2365590_2366949_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047793.1_2366950_2367958_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047793.1_2367935_2369051_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047793.1_2369061_2369754_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047793.1_2369764_2370232_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047793.1_2370283_2371261_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047793.1_2371262_2372210_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047793.1_2372759_2373689_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047793.1_2374224_2375538_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047793.1_2375632_2375737_+	NA	NA|289aa|down_0|NZ_CP047793.1_2376236_2377103_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047793.1_2377429_2378116_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047793.1_2378268_2378373_-	NA	NA|480aa|down_3|NZ_CP047793.1_2378546_2379986_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047793.1_2380106_2380886_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047793.1_2380866_2381586_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047793.1_2381582_2382314_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047793.1_2382410_2383661_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047793.1_2383915_2384278_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047793.1_2384296_2384896_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	8	2571406-2571531	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_1|NZ_CP047793.1_2572425_2572608_+,NA|56aa|down_8|NZ_CP047793.1_2580956_2581124_-	NA|315aa|up_9|NZ_CP047793.1_2561678_2562623_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_8|NZ_CP047793.1_2562639_2563008_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|523aa|up_7|NZ_CP047793.1_2563260_2564828_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|270aa|up_6|NZ_CP047793.1_2565203_2566013_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047793.1_2566009_2566870_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047793.1_2566859_2567666_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP047793.1_2567670_2568465_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047793.1_2568713_2569151_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047793.1_2569164_2569563_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047793.1_2569911_2571348_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP047793.1_2571596_2571776_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP047793.1_2572425_2572608_+	NA	NA|555aa|down_2|NZ_CP047793.1_2573077_2574742_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047793.1_2574778_2575483_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047793.1_2575873_2576299_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047793.1_2576593_2577409_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP047793.1_2577619_2578474_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP047793.1_2578533_2580960_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP047793.1_2580956_2581124_-	NA	NA|139aa|down_9|NZ_CP047793.1_2581366_2581783_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCF_009912675.1_ASM991267v1	NZ_CP047793	Staphylococcus aureus strain UP_764 chromosome, complete genome	9	2779765-2779854	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|52aa|down_2|NZ_CP047793.1_2780407_2780563_+,NA|68aa|down_3|NZ_CP047793.1_2780547_2780751_+,NA|128aa|down_4|NZ_CP047793.1_2780752_2781136_+,NA|127aa|down_8|NZ_CP047793.1_2784421_2784802_+	NA|188aa|up_9|NZ_CP047793.1_2770130_2770694_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_8|NZ_CP047793.1_2770929_2771064_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP047793.1_2771666_2772452_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP047793.1_2772812_2773439_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|405aa|up_5|NZ_CP047793.1_2773635_2774850_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP047793.1_2774874_2775618_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP047793.1_2775792_2776077_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP047793.1_2776152_2777769_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP047793.1_2777837_2779010_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP047793.1_2779023_2779698_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP047793.1_2779870_2780089_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP047793.1_2780093_2780411_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|52aa|down_2|NZ_CP047793.1_2780407_2780563_+	NA	NA|68aa|down_3|NZ_CP047793.1_2780547_2780751_+	NA	NA|128aa|down_4|NZ_CP047793.1_2780752_2781136_+	NA	NA|106aa|down_5|NZ_CP047793.1_2781136_2781454_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_6|NZ_CP047793.1_2781517_2782387_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_7|NZ_CP047793.1_2782400_2784110_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_8|NZ_CP047793.1_2784421_2784802_+	NA	NA|214aa|down_9|NZ_CP047793.1_2784798_2785440_+	pfam16560, SAPI, Putative mobile pathogenicity island
