The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	0	24289	2752372	terminase,tail,protease,portal,holin,capsid,head	Staphylococcus_phage(100.0%)	28	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238237.1|4774_5035_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000150936.1|5047_5332_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5315_5678_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|5674_6079_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|6075_6483_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|6483_7128_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|7169_7394_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7443_7794_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001796452.1|8038_12568_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_000567408.1|12564_14049_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_160195071.1|14064_17850_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_001153681.1|17839_17992_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18038_18326_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_042853951.1|18383_18680_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	99.0	1.4e-45
WP_011447039.1|18829_19006_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19058_19166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19217_19472_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_160195072.1|19483_20239_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	2.2e-151
WP_000919350.1|20429_20921_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|21447_21906_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|22000_22450_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|23134_23485_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23537_23798_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24109_24289_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	30223	32670	2752372		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991300.1|30223_31120_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645721.1|31120_31801_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31797_32670_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 3
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	37917	38319	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205103.1|37917_38319_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
>prophage 4
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	42515	44545	2752372		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|42515_43076_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275721.1|43447_44545_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
>prophage 5
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	48575	50859	2752372		Bacillus_virus(100.0%)	2	NA	NA
WP_000284427.1|48575_50045_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
WP_000164017.1|50037_50859_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
>prophage 6
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	54545	61312	2752372		Gordonia_phage(33.33%)	5	NA	NA
WP_160195074.1|54545_55841_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55949_56252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272062.1|56423_57116_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|57112_59305_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_160195075.1|59308_61312_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	35.9	7.5e-114
>prophage 7
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	68370	73399	2752372		Catovirus(33.33%)	5	NA	NA
WP_001231459.1|68370_69318_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001147862.1|69398_70760_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.4e-103
WP_160195077.1|70929_71460_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_160195078.1|71707_72778_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|72844_73399_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	76851	77265	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001622129.1|76851_77265_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.8	5.1e-17
>prophage 9
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	82169	82799	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|82169_82799_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	98287	100024	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000597236.1|98287_100024_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.3e-53
>prophage 11
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	116518	117247	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_160195081.1|116518_117247_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	7.8e-37
>prophage 12
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	128242	128587	2752372		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|128242_128587_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 13
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	138220	138961	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|138220_138961_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 14
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	146689	150953	2752372		Staphylococcus_phage(80.0%)	5	NA	NA
WP_010922839.1|146689_147472_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821652.1|147752_148472_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	4.0e-25
WP_000713846.1|148506_149235_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	38.6	2.5e-27
WP_000764689.1|149388_150159_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
WP_001236362.1|150197_150953_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
>prophage 15
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	154205	155335	2752372	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|154205_155335_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 16
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	158850	198177	2752372	transposase,protease,tRNA	Staphylococcus_phage(91.18%)	42	NA	NA
WP_098686295.1|158850_159979_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_000627532.1|160181_160523_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_000669031.1|160563_161190_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000070666.1|161265_162261_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_001796416.1|162341_162992_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_072468941.1|163294_163750_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_000348383.1|163908_165387_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_160195083.1|165391_166393_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	9.0e-185
WP_000718111.1|166389_166647_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000672013.1|166712_167186_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001827685.1|167190_167937_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000109912.1|168316_169909_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933821.1|170278_171472_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366165.1|171596_172505_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453324.1|172716_173550_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000623468.1|173799_174153_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_001200545.1|174149_174515_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000091443.1|174770_175073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|175331_176045_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492904.1|176662_177283_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168913.1|177449_178085_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030473.1|178381_178825_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_160195084.1|178811_179255_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671060.1|179367_179838_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_000384171.1|180036_180261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032834.1|180535_181390_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989113.1|181476_182769_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_000221174.1|182768_183083_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_001261660.1|183725_185228_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_029549219.1|185721_186753_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_000493880.1|186759_187392_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_001159030.1|187402_188584_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008551.1|188596_189061_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|189182_190184_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|190295_190415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|190417_191245_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|191815_192217_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764418.1|192333_192897_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000526542.1|192893_193847_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025064.1|193956_195138_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001108717.1|195429_197844_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_000836464.1|197865_198177_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
>prophage 17
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	205174	206443	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160195085.1|205174_206443_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	96.4	1.3e-55
>prophage 18
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	217559	222887	2752372		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091394.1|217559_218417_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	99.3	4.4e-71
WP_001048366.1|218445_219042_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118323.1|219062_222887_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	3.4e-83
>prophage 19
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	231627	233334	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862076.1|231627_233334_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	4.7e-274
>prophage 20
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	239939	242570	2752372	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186034.1|239939_241202_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	7.9e-85
WP_001279338.1|241295_242570_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 21
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	246338	250473	2752372		Staphylococcus_phage(50.0%)	4	NA	NA
WP_160195089.1|246338_247943_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	99.5	3.5e-114
WP_000291426.1|247929_249090_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553931.1|249203_249650_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174269.1|249729_250473_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	1.4e-17
>prophage 22
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	268247	271445	2752372		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226934.1|268247_271445_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.3	1.1e-135
>prophage 23
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	276378	278136	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|276378_278136_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 24
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	283020	291184	2752372		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080026.1|283020_283725_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_072468943.1|283724_285386_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849447.1|285885_287373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038313.1|287665_290296_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114464.1|290311_291184_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	37.4	1.7e-41
>prophage 25
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	295099	306253	2752372	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|295099_296020_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_014937037.1|296112_296235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|296432_298370_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|298796_300290_+	amino acid permease	NA	NA	NA	NA	NA
WP_001807711.1|300518_301046_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	2.4e-11
WP_001125540.1|301074_301275_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|301321_301678_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|301819_302428_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280025.1|302446_303376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|303380_303491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|303538_304840_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|304990_306253_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 26
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	315821	318452	2752372	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425356.1|315821_318452_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.8e-153
>prophage 27
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	328250	363858	2752372	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005764.1|328250_329255_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019180.1|329256_330282_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|330304_331444_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|331462_331723_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|331997_334277_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_160195093.1|334480_336754_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000364543.1|336775_337294_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_001058586.1|337722_339912_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|339923_340376_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|340372_341248_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|341708_342971_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044803.1|342986_344753_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	26.9	4.9e-16
WP_001827648.1|345084_345213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682645.1|345212_345986_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|346146_347421_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|347505_347928_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|348027_348210_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|348249_348396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985881.1|348632_349646_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_160195094.1|349957_351100_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	6.3e-33
WP_000066103.1|351100_352219_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567023.1|352907_353576_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_160195095.1|353577_356055_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.3	1.9e-66
WP_000734073.1|356397_359028_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|359090_359351_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|359354_359783_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|359797_360106_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|360390_361029_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|361031_361955_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|361966_363235_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|363234_363858_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 28
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	370535	372923	2752372		Lactococcus_phage(50.0%)	2	NA	NA
WP_000542326.1|370535_371756_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	34.6	8.5e-52
WP_001622271.1|372170_372923_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	40.9	1.9e-49
>prophage 29
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	380192	386356	2752372		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|380192_380654_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953292.1|380712_382860_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.8	3.5e-32
WP_001282573.1|382916_383891_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|383935_384187_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|384532_386356_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 30
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	389790	392898	2752372		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034717.1|389790_391623_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119019.1|391758_392898_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.0	3.0e-27
>prophage 31
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	399367	400315	2752372		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|399367_400315_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 32
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	403369	417094	2752372	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030077.1|403369_404761_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.5	1.6e-46
WP_072468919.1|405092_405716_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|405726_406545_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_160195097.1|406605_408405_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
WP_001283055.1|408628_409735_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624564.1|409865_410543_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683915.1|410545_411646_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062177.1|411759_413106_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|413115_414006_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|414131_414917_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564318.1|414958_415822_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095258.1|415808_416219_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|416494_417094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 33
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	423267	423891	2752372		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223009.1|423267_423891_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	2.1e-30
>prophage 34
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	429435	432247	2752372		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019698.1|429435_430782_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.4	5.3e-63
WP_000202176.1|430774_432247_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 35
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	439746	446316	2752372		Indivirus(66.67%)	6	NA	NA
WP_001286934.1|439746_441084_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.2e-43
WP_000159865.1|441076_441307_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183379.1|441284_442166_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.2	1.5e-10
WP_001124985.1|442596_443049_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942206.1|443064_444744_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291530.1|444894_446316_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.7	5.1e-40
>prophage 36
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	453143	454550	2752372		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|453143_454550_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 37
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	459196	460681	2752372		Cyanophage(100.0%)	1	NA	NA
WP_000105075.1|459196_460681_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 38
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	466345	480771	2752372		Bacillus_phage(28.57%)	14	NA	NA
WP_000447733.1|466345_467233_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183432.1|467310_467817_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273372.1|467908_468640_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368647.1|468632_469175_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159580.1|469167_469905_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064074.1|470037_470763_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	6.0e-45
WP_000987760.1|470743_472495_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_001622322.1|472746_473676_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033750.1|473668_475831_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.5	7.0e-49
WP_000476856.1|475921_476836_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186906.1|477441_477987_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151999.1|478092_478341_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	6.4e-15
WP_001163808.1|478448_479402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160195103.1|479391_480771_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	4.9e-56
>prophage 39
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	490196	495686	2752372		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|490196_490469_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450565.1|490899_491472_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774683.1|491474_492200_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001827577.1|492216_493161_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.0	2.1e-10
WP_000442481.1|493252_493702_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.4e-28
WP_000789524.1|493911_494112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269939.1|494519_495686_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
>prophage 40
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	499348	499924	2752372		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|499348_499924_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 41
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	503310	510817	2752372	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361547.1|503310_504513_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000049921.1|504499_505471_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525057.1|505494_508188_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|508509_509802_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362215.1|510130_510817_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	31.4	1.2e-07
>prophage 42
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	514508	515135	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|514508_515135_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 43
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	524459	525338	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_001133028.1|524459_525338_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.1e-19
>prophage 44
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	563344	572733	2752372		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282160.1|563344_564049_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|564293_564488_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|564499_564751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404632.1|564787_565912_+	virulence factor	NA	NA	NA	NA	NA
WP_160195107.1|565927_566365_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|566788_567745_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175742.1|567944_568424_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	4.5e-73
WP_000166049.1|568438_569278_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	3.0e-48
WP_000159902.1|569363_569897_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|569889_570318_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|570329_570830_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|570829_571051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342148.1|571242_572733_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 45
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	576143	578155	2752372		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|576143_576803_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166793.1|576799_578155_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 46
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	585824	586616	2752372		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|585824_586616_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 47
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	590149	595759	2752372	protease,lysis	Lactobacillus_phage(33.33%)	8	NA	NA
WP_000138414.1|590149_591286_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.0	2.2e-33
WP_001796534.1|591317_591947_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215908.1|591965_592235_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|592397_592706_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|592876_593077_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876215.1|593272_593674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275771.1|593798_594416_+|protease	protease	protease	NA	NA	NA	NA
WP_000216938.1|594493_595759_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.5	9.5e-14
>prophage 48
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	603602	605204	2752372		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|603602_605204_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 49
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	609629	617223	2752372		Indivirus(25.0%)	8	NA	NA
WP_000194851.1|609629_610481_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.2	2.6e-15
WP_000974853.1|610487_611129_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077577.1|611268_613083_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.1e-153
WP_000171798.1|613287_613632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000469973.1|613959_614946_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000946381.1|614938_615769_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000052306.1|615755_616529_+	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	25.7	2.2e-05
WP_000571261.1|616521_617223_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	9.0e-14
>prophage 50
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	624717	627072	2752372		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153718.1|624717_625500_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.3e-26
WP_000173848.1|625501_626500_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.6	3.8e-34
WP_000604801.1|626505_627072_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	5.0e-23
>prophage 51
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	631391	632654	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000283026.1|631391_632654_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.6	2.6e-96
>prophage 52
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	642312	646706	2752372		Bacillus_phage(50.0%)	2	NA	NA
WP_001289594.1|642312_644715_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.1	5.1e-93
WP_025173910.1|644714_646706_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
>prophage 53
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	652329	653976	2752372		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|652329_653976_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 54
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	657645	658767	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691306.1|657645_658767_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 55
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	662916	668571	2752372		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|662916_663540_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380739.1|663919_664783_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|664856_664961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160195112.1|664957_665935_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	1.2e-184
WP_001085655.1|666091_666361_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|666813_666963_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082546.1|667053_668571_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	1.8e-91
>prophage 56
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	678707	682983	2752372		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|678707_679241_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027140.1|679379_679568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623460.1|679680_680283_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_160195113.1|680279_681371_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000243879.1|681374_682106_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001796717.1|682080_682983_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.8	3.7e-20
>prophage 57
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	687795	703479	2752372	terminase,transposase,portal,integrase,head	Staphylococcus_phage(54.55%)	24	684943:684960	709640:709657
684943:684960	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_078064715.1|687795_688737_-|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.0e-52
WP_000158569.1|689266_690715_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
WP_160195246.1|690727_692002_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	9.4e-195
WP_000090969.1|691988_692417_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000653928.1|692568_693057_-	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000835356.1|693333_693798_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_025174108.1|693794_693902_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000185174.1|694043_694574_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_000714365.1|694882_695041_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000945229.1|695055_695346_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000929467.1|695346_696285_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_076679818.1|696298_696793_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_160195247.1|696873_697053_-	hypothetical protein	NA	A7TWM7	Staphylococcus_phage	71.2	9.2e-16
WP_098686295.1|697089_698218_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_001004328.1|698879_699416_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000786635.1|699420_699687_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_000786995.1|699676_699994_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000072840.1|700080_700242_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000789021.1|700412_700694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160195114.1|700718_700955_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	5.6e-29
WP_001083979.1|701116_701482_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000554409.1|701628_702012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001183752.1|702023_702719_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.4e-06
WP_000146714.1|702771_703479_+|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
709640:709657	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 58
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	708096	708573	2752372		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448081.1|708096_708573_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	2.7e-22
>prophage 59
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	714516	720998	2752372		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|714516_715335_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001072707.1|715809_716352_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516248.1|716357_718367_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	3.1e-59
WP_000073337.1|718379_720998_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.5	8.5e-41
>prophage 60
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	730412	731456	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_031873573.1|730412_731456_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	1.6e-123
>prophage 61
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	735656	741200	2752372		Bacillus_virus(33.33%)	4	NA	NA
WP_000664766.1|735656_736943_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089944.1|736942_738208_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	2.0e-40
WP_001293306.1|738238_738952_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072468899.1|738956_741200_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.1e-84
>prophage 62
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	746338	758153	2752372	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|746338_747310_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282307.1|747324_748242_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|748411_748762_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043642.1|749148_751266_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020856.1|751270_751588_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|751584_751869_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|751889_753065_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|753085_753553_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_078064710.1|753842_758153_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 63
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	762426	763197	2752372		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|762426_763197_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 64
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	767970	781637	2752372	protease,tRNA	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|767970_769374_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|769439_769985_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015604.1|769981_770878_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	4.6e-31
WP_000195251.1|771295_772603_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001622395.1|772758_774834_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	2.3e-105
WP_000620185.1|775007_775880_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672866.1|776051_777296_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_160195118.1|777323_778436_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	1.2e-49
WP_000110253.1|778664_779573_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|779594_780761_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176404.1|780869_781637_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 65
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	795020	797077	2752372		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|795020_795752_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|795866_796100_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|796342_797077_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 66
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	807447	809442	2752372		Moumouvirus(100.0%)	1	NA	NA
WP_000579546.1|807447_809442_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 67
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	812589	813525	2752372	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161292.1|812589_813525_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 68
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	818528	820785	2752372		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722167.1|818528_819728_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.7	2.7e-42
WP_000933956.1|819943_820162_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368225.1|820161_820785_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 69
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	824151	824763	2752372		Pandoravirus(100.0%)	1	NA	NA
WP_001040247.1|824151_824763_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	2.1e-27
>prophage 70
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	828730	833341	2752372		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|828730_829831_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767035.1|829832_831107_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016170.1|831124_832006_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	6.0e-31
WP_001178613.1|832033_833341_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 71
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	837274	840028	2752372	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_160195119.1|837274_840028_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.1	8.0e-90
>prophage 72
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	859598	859787	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245799.1|859598_859787_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	8.5e-20
>prophage 73
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	868670	872715	2752372		Staphylococcus_phage(66.67%)	6	NA	NA
WP_000192697.1|868670_868883_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	69.2	8.1e-19
WP_000765705.1|868866_869013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857478.1|869680_870640_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.6	3.3e-35
WP_000231332.1|871093_871327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032820.1|871935_872121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669539.1|872364_872715_-	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	51.8	6.4e-21
>prophage 74
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	884187	887023	2752372		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001018928.1|884187_884502_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_160195120.1|884674_887023_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	1.4e-15
>prophage 75
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	891355	950899	2752372	terminase,tail,portal,holin,tRNA,plate,capsid,head	Staphylococcus_phage(72.58%)	79	NA	NA
WP_000908991.1|891355_893758_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_160195121.1|893757_894816_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000435367.1|895195_895936_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_001803551.1|896175_896283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000670950.1|896319_896643_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001220701.1|896661_897396_-	class B sortase	NA	NA	NA	NA	NA
WP_160195122.1|897457_898426_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001220193.1|898435_899314_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001246691.1|899310_900387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789809.1|900386_901070_-	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_000160852.1|901278_902331_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_001041566.1|902533_904468_+	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_001796941.1|904878_905079_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	97.0	4.0e-28
WP_000139423.1|905065_905176_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|905246_905399_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148135.1|905641_907087_-	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
WP_031773533.1|907067_907505_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	99.3	1.5e-72
WP_000398857.1|907560_907956_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	99.2	6.1e-68
WP_160195123.1|907960_909199_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	99.0	5.0e-209
WP_160195124.1|909211_911110_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
WP_000466777.1|911246_911546_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_015990323.1|911586_911760_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000705907.1|911763_912141_-	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_015967259.1|912140_913964_-|plate	BppU family phage baseplate upper protein	plate	Q9FZY8	Staphylococcus_virus	100.0	4.6e-296
WP_160195125.1|913963_915874_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.7	0.0e+00
WP_000156404.1|915888_917790_-	peptidase	NA	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
WP_000350680.1|917798_918746_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_160195126.1|918758_922223_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	98.3	2.9e-262
WP_000105584.1|922239_922584_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100163.1|922613_922979_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002576.1|923040_923622_-|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	99.0	2.4e-105
WP_160195127.1|923640_924024_-	hypothetical protein	NA	Q4ZDM4	Staphylococcus_virus	98.4	2.9e-67
WP_001017815.1|924035_924383_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268312.1|924382_924685_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|924681_925014_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114086.1|925022_925310_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000438511.1|925331_926306_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_000392151.1|926319_926940_-	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000072208.1|927048_927219_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|927291_928287_-|head	phage head morphogenesis protein	head	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_160195128.1|928293_929829_-|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	96.5	1.2e-281
WP_031769002.1|929839_931117_-|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	99.8	1.1e-248
WP_001003271.1|931103_931544_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000058632.1|931729_932149_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_160195129.1|932163_932310_-	hypothetical protein	NA	Q4ZDN7	Staphylococcus_virus	97.9	1.7e-15
WP_031794708.1|932310_932499_-	transcriptional regulator	NA	Q77FU4	Staphylococcus_phage	98.4	8.8e-25
WP_160195130.1|932486_932687_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	98.5	6.9e-28
WP_160195131.1|932661_932850_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	91.9	5.7e-24
WP_054193490.1|932886_933417_-	dUTPase	NA	I1W653	Staphylococcus_phage	99.4	5.1e-94
WP_001065068.1|933409_933658_-	DUF1024 family protein	NA	A0A0E3T8I2	Staphylococcus_phage	98.8	5.4e-38
WP_160195132.1|933650_934022_-	acetyltransferase	NA	A0A0F6N3K4	Staphylococcus_phage	99.1	8.0e-54
WP_001562543.1|934030_934273_-	phage protein	NA	A0A0F6N3E1	Staphylococcus_phage	100.0	6.6e-41
WP_078371413.1|934276_934891_-	hypothetical protein	NA	Q4ZAC3	Staphylococcus_virus	96.4	2.2e-72
WP_031898213.1|934891_935077_-	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	6.0e-26
WP_031898212.1|935076_935484_-	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	97.8	5.5e-72
WP_001123688.1|935493_935715_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_160195133.1|935882_936662_-	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	99.2	1.3e-143
WP_000504982.1|936671_937475_-	replication protein	NA	A0A1X9H0K3	Staphylococcus_phage	100.0	7.9e-115
WP_000240897.1|937446_938229_-	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.0	3.1e-140
WP_160195134.1|938908_939367_-	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	97.2	1.1e-52
WP_000139720.1|939366_939990_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|939982_940204_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|940213_940474_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|940570_940732_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000395455.1|940911_941142_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000390105.1|941345_941540_-	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_001148566.1|941556_942345_-	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_001198672.1|942360_942579_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ0	Staphylococcus_phage	100.0	1.7e-35
WP_000358224.1|942720_943440_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_000392109.1|943475_944156_+	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000861313.1|944362_945748_+	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000290472.1|945864_946038_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000872158.1|946117_946675_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000843619.1|946801_947941_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000401377.1|948002_948485_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263798.1|948486_949029_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814568.1|949098_949488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|949490_949745_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757595.1|949969_950899_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.3e-12
>prophage 76
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	962417	964265	2752372		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|962417_964265_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 77
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	972400	976041	2752372		Mycoplasma_phage(50.0%)	4	NA	NA
WP_000433547.1|972400_973495_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.8e-37
WP_001020625.1|973507_974047_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455589.1|974190_974466_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|974634_976041_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 78
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	980683	981235	2752372		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|980683_981235_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 79
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	987470	991849	2752372		Bacillus_virus(50.0%)	5	NA	NA
WP_001289619.1|987470_987704_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040046.1|987939_989658_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|989660_989927_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505969.1|990080_990623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685080.1|990676_991849_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	2.0e-74
>prophage 80
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	994965	1009726	2752372		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921979.1|994965_996366_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	2.0e-12
WP_160195136.1|996358_997165_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101904.1|997430_998678_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709286.1|998699_1000178_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	1.9e-77
WP_000238657.1|1000192_1000759_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
WP_000030827.1|1000761_1001790_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000483713.1|1001782_1003267_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032752.1|1003245_1005435_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666803.1|1005427_1006099_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1006100_1006364_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174048.1|1006363_1007068_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_001010404.1|1007071_1008196_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_160195137.1|1008182_1008665_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	5.2e-21
WP_000225844.1|1008865_1009726_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.8	2.0e-39
>prophage 81
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1020160	1023925	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160195139.1|1020160_1023925_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	8.7e-55
>prophage 82
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1027577	1028579	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676571.1|1027577_1028579_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 83
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1036884	1040410	2752372		Enterococcus_phage(50.0%)	6	NA	NA
WP_001796516.1|1036884_1037175_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	3.4e-07
WP_001794249.1|1037238_1037370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160195141.1|1037416_1038376_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1038867_1039224_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001796515.1|1039390_1039681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571169.1|1039768_1040410_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.8e-19
>prophage 84
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1050550	1055761	2752372	protease	Pithovirus(33.33%)	3	NA	NA
WP_001796514.1|1050550_1052875_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000928413.1|1053093_1053897_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049954.1|1054198_1055761_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.3e-36
>prophage 85
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1074688	1076497	2752372		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1074688_1076497_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 86
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1082311	1084281	2752372		Bacillus_virus(100.0%)	2	NA	NA
WP_000427779.1|1082311_1083292_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001067039.1|1083294_1084281_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 87
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1087932	1089946	2752372		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_001258350.1|1087932_1088874_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	2.1e-05
WP_000140054.1|1088863_1089946_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	2.9e-19
>prophage 88
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1097878	1102505	2752372		Agrobacterium_phage(50.0%)	2	NA	NA
WP_000353969.1|1097878_1100488_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044231.1|1100690_1102505_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 89
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1107795	1111449	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000154909.1|1107795_1111449_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	3.5e-24
>prophage 90
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1122204	1129308	2752372		Staphylococcus_phage(33.33%)	6	NA	NA
WP_160195145.1|1122204_1123134_+	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	37.7	1.7e-39
WP_000138487.1|1123582_1124827_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1124935_1126126_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838022.1|1126433_1127561_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1127921_1128299_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035064.1|1128714_1129308_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.5e-25
>prophage 91
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1139242	1142870	2752372		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009695.1|1139242_1140718_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.2e-47
WP_000046076.1|1140848_1142057_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|1142510_1142870_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 92
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1146914	1149583	2752372		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1146914_1148129_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129643.1|1148125_1149583_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	8.9e-40
>prophage 93
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1162791	1166314	2752372		environmental_halophage(50.0%)	3	NA	NA
WP_000807674.1|1162791_1164033_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.8e-110
WP_000205572.1|1164147_1165455_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1165552_1166314_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 94
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1169798	1170824	2752372		Bacillus_virus(100.0%)	1	NA	NA
WP_000571205.1|1169798_1170824_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	1.8e-26
>prophage 95
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1173893	1179071	2752372		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589550.1|1173893_1174250_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147956.1|1174393_1174714_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	9.1e-06
WP_000422908.1|1174863_1175403_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150033.1|1175485_1176202_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	3.4e-16
WP_000974451.1|1176349_1176772_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1177170_1177665_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255550.1|1177820_1178438_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|1178510_1179071_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 96
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1182474	1183718	2752372		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1182474_1182675_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001622483.1|1183031_1183718_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	2.9e-33
>prophage 97
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1192870	1201636	2752372		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001806213.1|1192870_1193599_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	2.1e-18
WP_000999093.1|1193883_1194498_-	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_001085185.1|1195473_1195938_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050026.1|1195959_1198332_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
WP_001165966.1|1198365_1199106_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1199234_1199468_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1199534_1199993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1200331_1201636_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 98
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1212679	1218551	2752372		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1212679_1213267_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1213829_1214774_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1214884_1215880_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1215876_1216788_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1217615_1218551_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 99
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1222711	1225540	2752372		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_160195153.1|1222711_1225540_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.7	0.0e+00
>prophage 100
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1228858	1229698	2752372		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749393.1|1228858_1229698_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 101
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1235779	1241493	2752372		Streptococcus_phage(66.67%)	5	NA	NA
WP_001622509.1|1235779_1236862_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	3.4e-44
WP_000686346.1|1237226_1238093_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1238236_1238878_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258151.1|1239049_1240105_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460988.1|1240422_1241493_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 102
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1250777	1274032	2752372		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000616861.1|1250777_1251539_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
WP_001245581.1|1251535_1252492_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876313.1|1252478_1253450_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_000562500.1|1253856_1254828_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000855505.1|1254945_1257051_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1257013_1257412_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1258213_1259080_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1259099_1259600_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193753.1|1259940_1261446_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_031785486.1|1261523_1261625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429016.1|1261715_1262633_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000197263.1|1263435_1263984_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663021.1|1264141_1265200_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000606781.1|1265439_1266954_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589263.1|1266946_1267924_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_160195157.1|1268144_1269926_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	8.5e-77
WP_000525111.1|1269937_1271821_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1272091_1274032_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 103
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1277176	1287021	2752372		Pandoravirus(12.5%)	12	NA	NA
WP_001217805.1|1277176_1278328_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604517.1|1278311_1278905_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_000446726.1|1279255_1279924_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000941336.1|1279925_1280345_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062976.1|1280348_1281062_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637683.1|1281160_1281745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093554.1|1282024_1282465_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1282805_1283279_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1283253_1283940_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1283939_1284995_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702775.1|1285066_1286050_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000931231.1|1286181_1287021_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.9e-55
>prophage 104
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1298645	1300019	2752372		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952028.1|1298645_1300019_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.8	2.3e-45
>prophage 105
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1304995	1311275	2752372		Bacillus_phage(33.33%)	6	NA	NA
WP_000857605.1|1304995_1306669_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_160195162.1|1306665_1308297_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	6.7e-12
WP_000469886.1|1308515_1309391_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358502.1|1309562_1310246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148819.1|1310248_1310707_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820900.1|1310708_1311275_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 106
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1318289	1318763	2752372		Pandoravirus(100.0%)	1	NA	NA
WP_000844823.1|1318289_1318763_-	cupin	NA	A0A291AU44	Pandoravirus	38.2	3.2e-15
>prophage 107
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1324025	1324823	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1324025_1324823_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 108
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1329545	1330307	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|1329545_1330307_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 109
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1334686	1335730	2752372		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030756.1|1334686_1335730_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 110
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1342253	1343051	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1342253_1343051_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 111
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1346280	1350239	2752372		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1346280_1348008_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793048.1|1348428_1349724_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	1.5e-14
WP_000832260.1|1349840_1350239_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 112
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1357174	1357918	2752372		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1357174_1357918_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 113
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1369002	1369563	2752372	integrase	Streptococcus_phage(100.0%)	1	1363156:1363170	1373149:1373163
1363156:1363170	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044966.1|1369002_1369563_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|1369002_1369563_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
1373149:1373163	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 114
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1382803	1386157	2752372		Tupanvirus(50.0%)	3	NA	NA
WP_001200749.1|1382803_1383814_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	1.5e-33
WP_001796423.1|1384312_1384834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1384861_1386157_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 115
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1394345	1395668	2752372		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860583.1|1394345_1395668_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.3	9.7e-110
>prophage 116
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1406971	1407628	2752372		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|1406971_1407628_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 117
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1411295	1414547	2752372		Staphylococcus_phage(50.0%)	2	NA	NA
WP_160195165.1|1411295_1412603_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.1	1.7e-21
WP_000347068.1|1413146_1414547_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	2.1e-54
>prophage 118
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1437958	1438621	2752372		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067257.1|1437958_1438621_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	36.9	3.1e-24
>prophage 119
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1445167	1446355	2752372		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250816.1|1445167_1446355_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.8	8.8e-46
>prophage 120
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1449385	1460339	2752372		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1449385_1451467_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1451589_1452060_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1452125_1452539_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1452636_1452891_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001827373.1|1453027_1456624_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	1.9e-67
WP_000918680.1|1456787_1460339_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 121
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1464022	1468805	2752372	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1464022_1464571_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1464583_1464766_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1464821_1464965_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872878.1|1465079_1465649_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664731.1|1465729_1466254_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_160195169.1|1466253_1467000_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370179.1|1467007_1467412_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_160195170.1|1467404_1468805_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	2.1e-54
>prophage 122
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1474816	1477273	2752372	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897128.1|1474816_1477273_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.3	4.7e-134
>prophage 123
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1490967	1501240	2752372	tRNA,protease	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1490967_1492455_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_031785444.1|1492507_1492600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613718.1|1492993_1493470_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154303.1|1493466_1493832_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167941.1|1493809_1494613_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.8	5.1e-21
WP_000057594.1|1494828_1495761_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1495939_1496821_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_160195172.1|1497049_1499143_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1499400_1499940_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176731.1|1499944_1501240_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.2	1.4e-12
>prophage 124
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1510496	1512961	2752372		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1510496_1511462_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252527.1|1511608_1512961_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 125
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1518844	1521942	2752372	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_001051142.1|1518844_1520818_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
WP_000279924.1|1521102_1521942_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	1.3e-56
>prophage 126
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1525848	1526466	2752372		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272125.1|1525848_1526466_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	7.1e-47
>prophage 127
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1535302	1537000	2752372		Streptococcus_virus(100.0%)	1	NA	NA
WP_160195173.1|1535302_1537000_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.4	3.0e-55
>prophage 128
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1553648	1559873	2752372		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170274.1|1553648_1554653_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
WP_000825537.1|1554986_1555829_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1555865_1556525_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569277.1|1556528_1557554_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.3e-32
WP_160195174.1|1557832_1558975_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_000634103.1|1558967_1559873_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	3.2e-48
>prophage 129
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1582649	1585458	2752372		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072579.1|1582649_1583909_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.1	2.2e-47
WP_000028601.1|1583901_1585458_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.7	1.1e-282
>prophage 130
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1596991	1598725	2752372	transposase	Paenibacillus_phage(50.0%)	2	NA	NA
WP_000159788.1|1596991_1597318_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	2.5e-11
WP_000041875.1|1598020_1598725_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	1.5e-29
>prophage 131
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1604705	1607738	2752372		Hokovirus(50.0%)	2	NA	NA
WP_000424959.1|1604705_1606247_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.2	9.5e-24
WP_000264071.1|1606271_1607738_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 132
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1616694	1618218	2752372		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930500.1|1616694_1618218_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 133
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1627233	1647983	2752372	terminase,integrase,coat	Staphylococcus_phage(77.27%)	31	1626511:1626527	1641359:1641375
1626511:1626527	attL	TATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000813311.1|1627233_1627746_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
WP_073392942.1|1627863_1628301_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000801980.1|1628442_1629411_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_001293076.1|1629687_1630257_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.9	9.3e-102
WP_000358778.1|1630253_1630595_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771368.1|1630597_1631125_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448775.1|1631175_1631394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|1631411_1631990_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190608.1|1632001_1632343_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
WP_160195178.1|1632859_1633501_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
WP_001663080.1|1633502_1633775_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	92.2	9.7e-41
WP_000148373.1|1633761_1634565_-	DNA primase	NA	Q4ZE69	Staphylococcus_phage	97.4	3.1e-151
WP_001663081.1|1634735_1636349_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.4	2.3e-246
WP_001663082.1|1636423_1636720_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	1.1e-18
WP_001663083.1|1636720_1637104_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	93.7	7.0e-61
WP_001662724.1|1637105_1637309_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	95.5	2.2e-29
WP_000784883.1|1637293_1637449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001663084.1|1637460_1637733_-	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	84.9	2.7e-35
WP_000608987.1|1637765_1637978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000700230.1|1638122_1638818_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_160195179.1|1639096_1640311_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	98.8	1.2e-223
WP_000119675.1|1640334_1641132_+	mRNA interferase PemK	NA	Q4ZE81	Staphylococcus_phage	100.0	7.1e-108
WP_000897044.1|1641360_1641603_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1641359:1641375	attR	TATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000934799.1|1641654_1642158_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1642178_1642475_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1642718_1642910_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218729.1|1642995_1644093_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157346.1|1644104_1644308_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373079.1|1644337_1645219_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001621659.1|1645372_1646218_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655695.1|1646879_1647983_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.1	1.1e-10
>prophage 134
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1657903	1658746	2752372		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209476.1|1657903_1658746_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	3.8e-11
>prophage 135
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1678525	1681260	2752372		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280808.1|1678525_1679548_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191950.1|1679525_1680470_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000854324.1|1680459_1681260_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	41.9	6.8e-42
>prophage 136
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1699500	1700178	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911015.1|1699500_1700178_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	1.0e-30
>prophage 137
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1715232	1719672	2752372		Mycobacterium_phage(100.0%)	1	NA	NA
WP_160195184.1|1715232_1719672_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 138
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1731633	1733295	2752372		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570084.1|1731633_1732293_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	36.6	3.4e-23
WP_000736796.1|1732344_1733295_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	2.6e-16
>prophage 139
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1741821	1743258	2752372		Pandoravirus(100.0%)	1	NA	NA
WP_000164000.1|1741821_1743258_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	4.8e-30
>prophage 140
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1747016	1751556	2752372		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925389.1|1747016_1748756_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.6e-62
WP_000608820.1|1749016_1749691_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975339.1|1749834_1751556_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.7e-11
>prophage 141
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1760880	1761924	2752372		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000645598.1|1760880_1761924_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	27.7	2.7e-14
>prophage 142
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1769140	1770670	2752372		Vibrio_phage(100.0%)	1	NA	NA
WP_000838200.1|1769140_1770670_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	49.4	8.2e-12
>prophage 143
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1783191	1784697	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008393.1|1783191_1784697_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	3.5e-39
>prophage 144
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1795844	1801202	2752372		Tetraselmis_virus(50.0%)	2	NA	NA
WP_000894660.1|1795844_1798094_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000127975.1|1799645_1801202_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 145
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1811605	1813667	2752372		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818909.1|1811605_1812703_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166909.1|1813088_1813667_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	1.3e-13
>prophage 146
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1822218	1823811	2752372		Bacillus_virus(100.0%)	1	NA	NA
WP_000067369.1|1822218_1823811_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	2.9e-15
>prophage 147
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1840405	1841590	2752372		Klosneuvirus(100.0%)	1	NA	NA
WP_001084425.1|1840405_1841590_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	3.1e-35
>prophage 148
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1846448	1853624	2752372		Tupanvirus(100.0%)	1	NA	NA
WP_001656945.1|1846448_1853624_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	1.3e-67
>prophage 149
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1858472	1861470	2752372		Bacillus_virus(50.0%)	4	NA	NA
WP_000590842.1|1858472_1859213_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	1.7e-39
WP_000171926.1|1859554_1860067_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356967.1|1860245_1860449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013475.1|1860510_1861470_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 150
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1864810	1867295	2752372		Catovirus(50.0%)	2	NA	NA
WP_160195188.1|1864810_1865956_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	1.2e-23
WP_000779511.1|1866032_1867295_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	1.2e-21
>prophage 151
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1874313	1880878	2752372		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1874313_1875438_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028280.1|1875441_1876551_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1876563_1877592_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940779.1|1877581_1879405_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.9	6.1e-30
WP_000565293.1|1879424_1880189_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037324.1|1880191_1880878_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
>prophage 152
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1889707	1890481	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160195189.1|1889707_1890481_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	2.9e-13
>prophage 153
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1898516	1899116	2752372		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1898516_1899116_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 154
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1904064	1905045	2752372		Catovirus(100.0%)	1	NA	NA
WP_001796610.1|1904064_1905045_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.4	2.7e-48
>prophage 155
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1908897	1910100	2752372		Tupanvirus(100.0%)	1	NA	NA
WP_001223695.1|1908897_1910100_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	6.7e-09
>prophage 156
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1918366	1922576	2752372		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570806.1|1918366_1919347_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.4	1.6e-40
WP_001045124.1|1919577_1920570_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924996.1|1920585_1921581_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136627.1|1921577_1922576_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.9	2.0e-14
>prophage 157
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1971721	1973599	2752372		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000065395.1|1971721_1973599_-	restriction endonuclease subunit M	NA	A0A142K7G3	Mycobacterium_phage	27.2	1.2e-33
>prophage 158
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1977164	1987160	2752372		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|1977164_1977965_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104170.1|1978352_1979141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060151.1|1979141_1980476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|1980468_1982295_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|1982307_1983009_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095327.1|1984198_1985482_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000375647.1|1985759_1987160_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 159
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	1993846	2002885	2752372	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884335.1|1993846_1995133_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177475.1|1995510_1997025_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.0	2.6e-90
WP_000449218.1|1997350_1998163_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819075.1|1998250_2000914_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	7.9e-119
WP_000255583.1|2000950_2002885_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
>prophage 160
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2012973	2016102	2752372		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|2012973_2013813_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2014129_2014483_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2014550_2014946_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054109.1|2015205_2015775_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2015901_2016102_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 161
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2019416	2020175	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2019416_2020175_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 162
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2039293	2040307	2752372		Faustovirus(100.0%)	1	NA	NA
WP_160195197.1|2039293_2040307_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.0	1.8e-07
>prophage 163
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2052703	2053396	2752372		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185857.1|2052703_2053396_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	1.7e-28
>prophage 164
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2082766	2084626	2752372		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125632.1|2082766_2084626_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	1.3e-14
>prophage 165
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2111685	2112441	2752372		Planktothrix_phage(100.0%)	1	NA	NA
WP_000923765.1|2111685_2112441_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
>prophage 166
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2115877	2116375	2752372		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2115877_2116375_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 167
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2121413	2123797	2752372		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2121413_2123264_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000173331.1|2123260_2123797_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 168
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2128673	2138785	2752372	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000038850.1|2128673_2130383_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	2.9e-58
WP_000011688.1|2130660_2130873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028779.1|2131152_2131596_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172328.1|2131789_2133385_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	37.0	6.9e-78
WP_001796575.1|2133447_2133777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2134072_2135569_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031407.1|2135764_2136655_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237623.1|2136777_2137194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030055.1|2137447_2138785_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.4	4.2e-20
>prophage 169
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2166957	2171839	2752372		Staphylococcus_phage(66.67%)	4	NA	NA
WP_000751266.1|2166957_2167659_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	3.1e-38
WP_000996740.1|2167934_2168423_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_160195208.1|2168928_2170740_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
WP_000725216.1|2171101_2171839_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.7	6.1e-05
>prophage 170
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2179144	2183335	2752372		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161365.1|2179144_2180143_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	3.5e-35
WP_000076662.1|2180232_2180439_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_160195209.1|2180926_2183335_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.7	4.9e-128
>prophage 171
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2192577	2195570	2752372	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001063338.1|2192577_2194686_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.5e-117
WP_000262599.1|2195048_2195570_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
>prophage 172
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2201995	2208378	2752372		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|2201995_2203735_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473692.1|2204034_2206101_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206034.1|2206480_2206891_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240665.1|2206932_2207277_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228154.1|2207409_2208378_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.9	1.2e-11
>prophage 173
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2217673	2218666	2752372		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|2217673_2218666_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 174
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2228080	2228776	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382895.1|2228080_2228776_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	8.8e-38
>prophage 175
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2248169	2255356	2752372		Bacillus_phage(66.67%)	6	NA	NA
WP_000721337.1|2248169_2249036_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
WP_000217713.1|2249162_2249471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000678763.1|2249610_2249877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072468810.1|2250160_2251969_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.7	2.4e-95
WP_000755944.1|2252100_2252493_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088708.1|2252494_2255356_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
>prophage 176
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2263188	2263884	2752372		Bacillus_phage(100.0%)	1	NA	NA
WP_000217460.1|2263188_2263884_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	6.6e-09
>prophage 177
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2269320	2270139	2752372		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824951.1|2269320_2270139_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	29.5	3.2e-10
>prophage 178
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2278078	2279636	2752372		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173856.1|2278078_2278894_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	4.7e-14
WP_000590515.1|2278886_2279636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 179
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2285868	2290295	2752372		Bacillus_virus(50.0%)	4	NA	NA
WP_000923514.1|2285868_2286531_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.0	2.7e-20
WP_000072159.1|2286523_2287300_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026186.1|2287693_2288881_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700906.1|2288942_2290295_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	35.8	6.6e-13
>prophage 180
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2293930	2295157	2752372		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948985.1|2293930_2295157_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.6	8.6e-20
>prophage 181
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2313529	2319660	2752372		Bacillus_phage(66.67%)	6	NA	NA
WP_001176860.1|2313529_2314672_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	6.9e-56
WP_000779354.1|2314939_2315326_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|2315459_2315567_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000301894.1|2315593_2315761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001064831.1|2316138_2317878_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.9	8.7e-34
WP_000488492.1|2317926_2319660_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.1e-32
>prophage 182
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2323121	2328900	2752372		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971558.1|2323121_2324237_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	25.0	1.2e-20
WP_000286884.1|2324247_2324940_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200952.1|2324950_2325418_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_001056918.1|2325476_2326454_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	1.4e-142
WP_000916696.1|2326455_2327403_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	78.7	4.0e-142
WP_000594516.1|2327970_2328900_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
>prophage 183
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2336722	2337454	2752372		Bacillus_virus(100.0%)	1	NA	NA
WP_000615468.1|2336722_2337454_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	3.4e-24
>prophage 184
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2353295	2354855	2752372		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2353295_2354855_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 185
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2376253	2377288	2752372		Bacillus_virus(100.0%)	1	NA	NA
WP_000655972.1|2376253_2377288_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 186
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2387707	2394268	2752372		Staphylococcus_phage(25.0%)	8	NA	NA
WP_000340143.1|2387707_2388436_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	1.5e-27
WP_000372850.1|2388569_2389133_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000793171.1|2389309_2389765_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000977035.1|2389761_2390205_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000477342.1|2390371_2391745_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	6.7e-13
WP_000249501.1|2391737_2392412_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.6	1.2e-52
WP_000761401.1|2392547_2393603_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_160195221.1|2393602_2394268_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	5.5e-37
>prophage 187
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2398006	2399215	2752372		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2398006_2399215_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 188
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2411312	2412212	2752372		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524843.1|2411312_2412212_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	4.7e-15
>prophage 189
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2425018	2425900	2752372		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730049.1|2425018_2425900_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.9e-62
>prophage 190
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2433780	2434416	2752372		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285454.1|2433780_2434416_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	4.2e-10
>prophage 191
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2448165	2452729	2752372		Staphylococcus_phage(50.0%)	4	NA	NA
WP_072468848.1|2448165_2448804_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_160195225.1|2449696_2450821_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	2.1e-12
WP_000417008.1|2450912_2451866_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000733941.1|2452228_2452729_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 192
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2456649	2457459	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717388.1|2456649_2457459_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 193
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2476436	2477042	2752372		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2476436_2477042_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 194
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2489128	2492296	2752372		Leptospira_phage(100.0%)	1	NA	NA
WP_160195228.1|2489128_2492296_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	8.1e-62
>prophage 195
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2515991	2517658	2752372		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389669.1|2515991_2516801_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	4.3e-20
WP_000027572.1|2516797_2517658_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.1e-10
>prophage 196
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2520699	2525545	2752372		Mycobacterium_phage(50.0%)	4	NA	NA
WP_000204279.1|2520699_2522136_+	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	3.5e-57
WP_000655242.1|2523227_2523410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622005.1|2523391_2523592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000130128.1|2523880_2525545_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	3.6e-45
>prophage 197
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2531100	2531955	2752372		Clostridium_phage(100.0%)	1	NA	NA
WP_001044440.1|2531100_2531955_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	2.2e-06
>prophage 198
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2535467	2537424	2752372		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001015496.1|2535467_2536316_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
WP_001622009.1|2536534_2536756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622010.1|2536683_2537424_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	2.3e-15
>prophage 199
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2543746	2545159	2752372		Pandoravirus(100.0%)	1	NA	NA
WP_000169213.1|2543746_2545159_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 200
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2550960	2552523	2752372		Vibrio_phage(100.0%)	1	NA	NA
WP_000792328.1|2550960_2552523_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.2	1.2e-18
>prophage 201
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2562728	2563697	2752372		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2562728_2563697_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 202
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2579523	2580432	2752372		Klosneuvirus(100.0%)	1	NA	NA
WP_000162593.1|2579523_2580432_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.3	1.2e-26
>prophage 203
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2584028	2591408	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160195236.1|2584028_2591408_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	24.3	1.0e-19
>prophage 204
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2597680	2600501	2752372		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2597680_2599486_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908197.1|2599718_2600501_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	1.7e-08
>prophage 205
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2610112	2613949	2752372		Clostridium_phage(50.0%)	4	NA	NA
WP_000070865.1|2610112_2610556_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2610676_2611387_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083321.1|2611701_2612364_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242295.1|2612647_2613949_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 206
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2621887	2623498	2752372		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_160195240.1|2621887_2623498_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 207
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2631302	2639055	2752372		Bacillus_virus(25.0%)	9	NA	NA
WP_000273353.1|2631302_2631902_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	4.8e-32
WP_000460243.1|2631902_2632979_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248725.1|2632965_2633802_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_072492072.1|2633834_2634932_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	6.1e-41
WP_000697337.1|2634928_2635348_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654179.1|2635454_2635979_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_160195241.1|2636005_2637244_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.1e-102
WP_000048712.1|2637271_2637901_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723406.1|2637924_2639055_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.4e-27
>prophage 208
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2649488	2649884	2752372		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2649488_2649884_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 209
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2655793	2656441	2752372		Moumouvirus(100.0%)	1	NA	NA
WP_001187625.1|2655793_2656441_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.5	9.5e-10
>prophage 210
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2663641	2665162	2752372		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178935.1|2663641_2665162_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 211
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2670836	2672864	2752372		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546588.1|2670836_2672864_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	1.5e-24
>prophage 212
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2678013	2681397	2752372		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2678013_2678376_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2678724_2679726_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2679844_2680171_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190825.1|2680172_2680652_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2680626_2681397_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 213
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2695894	2700618	2752372		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094576.1|2695894_2697424_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2697453_2698473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2698594_2698849_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_160195244.1|2698848_2700618_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	9.1e-63
>prophage 214
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2704383	2718447	2752372	tRNA	Moraxella_phage(16.67%)	13	NA	NA
WP_000159047.1|2704383_2705409_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000106320.1|2705722_2707333_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.6	3.3e-19
WP_072468947.1|2707424_2707538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602061.1|2707697_2709626_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	7.1e-53
WP_001283613.1|2709878_2710514_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_073394851.1|2710868_2711897_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2711956_2712181_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052281.1|2712388_2713639_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	3.4e-40
WP_000790314.1|2713822_2714773_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141419.1|2714921_2716406_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	4.0e-19
WP_001253295.1|2716402_2717362_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_031785433.1|2717551_2717659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000688492.1|2717730_2718447_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 215
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2725575	2727552	2752372		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2725575_2725860_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2725935_2727552_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 216
NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2752372	2731440	2751901	2752372	integrase	Staphylococcus_phage(97.3%)	38	2725823:2725838	2737093:2737108
2725823:2725838	attL	TTTTAAATGAAGAAGA	NA	NA	NA	NA
WP_000791399.1|2731440_2732496_+	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_000595616.1|2732517_2733537_+	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
WP_000857191.1|2734674_2735712_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|2735770_2736235_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2736334_2736517_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2736720_2737062_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2737067_2738000_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
2737093:2737108	attR	TCTTCTTCATTTAAAA	NA	NA	NA	NA
WP_001031454.1|2738015_2738729_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2738691_2738865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854074.1|2738861_2739143_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
WP_001025404.1|2739139_2739355_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|2739343_2739673_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|2739723_2740476_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2740491_2740689_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762519.1|2740675_2741056_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001120201.1|2741110_2741434_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2741430_2741592_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2741686_2741989_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2741993_2742254_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2742262_2742526_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2742534_2744478_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|2744479_2745400_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_160195252.1|2745480_2746098_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	1.2e-86
WP_000610648.1|2746098_2746569_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_000148321.1|2746598_2747492_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000338530.1|2747498_2747717_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2747725_2748130_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2748142_2748511_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2748514_2748757_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|2748771_2749026_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_001066447.1|2749175_2749712_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2749748_2749994_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2749990_2750197_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2750193_2750580_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2750576_2750726_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|2750725_2750926_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|2750953_2751370_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2751601_2751901_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
