assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	1	78711-78906	1	PILER-CR	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	GGGCCCCAACATAGAGAATTTCGAAAAA	28	1	1	78854-78881	NZ_CP047798.1_2483637-2483664	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_5|NZ_CP047798.1_73615_73708_+,NA|138aa|up_1|NZ_CP047798.1_76851_77265_+,NA|129aa|down_1|NZ_CP047798.1_80037_80424_+,NA|92aa|down_6|NZ_CP047798.1_84406_84682_-	NA|454aa|up_9|NZ_CP047798.1_69398_70760_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_8|NZ_CP047798.1_70929_71460_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_7|NZ_CP047798.1_71707_72778_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_6|NZ_CP047798.1_72844_73399_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_5|NZ_CP047798.1_73615_73708_+	NA	NA|167aa|up_4|NZ_CP047798.1_73789_74290_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|NZ_CP047798.1_74581_75895_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|NZ_CP047798.1_75896_76628_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|138aa|up_1|NZ_CP047798.1_76851_77265_+	NA	NA|329aa|up_0|NZ_CP047798.1_77442_78429_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP047798.1_79062_79821_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP047798.1_80037_80424_+	NA	NA|234aa|down_2|NZ_CP047798.1_80438_81140_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP047798.1_81136_82180_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP047798.1_82169_82799_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP047798.1_82911_84129_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP047798.1_84406_84682_-	NA	NA|155aa|down_7|NZ_CP047798.1_84688_85153_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP047798.1_85299_85500_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_9|NZ_CP047798.1_85511_86759_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	2	120442-120575	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|51aa|up_0|NZ_CP047798.1_119782_119935_+,NA|132aa|down_0|NZ_CP047798.1_120874_121270_+,NA|28aa|down_8|NZ_CP047798.1_129125_129209_+	NA|152aa|up_9|NZ_CP047798.1_102971_103427_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_8|NZ_CP047798.1_103432_104383_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|149aa|up_7|NZ_CP047798.1_104479_104926_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|354aa|up_6|NZ_CP047798.1_113754_114816_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|486aa|up_5|NZ_CP047798.1_115074_116532_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|up_4|NZ_CP047798.1_116518_117247_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|381aa|up_3|NZ_CP047798.1_117382_118525_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|up_2|NZ_CP047798.1_118529_119000_+	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|200aa|up_1|NZ_CP047798.1_119158_119758_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|51aa|up_0|NZ_CP047798.1_119782_119935_+	NA	NA|132aa|down_0|NZ_CP047798.1_120874_121270_+	NA	NA|462aa|down_1|NZ_CP047798.1_121465_122851_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|274aa|down_2|NZ_CP047798.1_123307_124129_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|371aa|down_3|NZ_CP047798.1_124291_125404_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|208aa|down_4|NZ_CP047798.1_125425_126049_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|155aa|down_5|NZ_CP047798.1_126406_126871_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|375aa|down_6|NZ_CP047798.1_127049_128174_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|115aa|down_7|NZ_CP047798.1_128242_128587_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|28aa|down_8|NZ_CP047798.1_129125_129209_+	NA	NA|399aa|down_9|NZ_CP047798.1_129520_130717_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	3	1123291-1123376	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGGCTTT	30	1	4	1123321-1123346|1123321-1123346|1123321-1123346|1123321-1123346	NZ_CP047798.1_1210595-1210570|NZ_CP047798.1_1778871-1778896|NZ_CP047798.1_2449103-2449128|NZ_CP047798.1_2449159-2449184	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047798.1_1106727_1107630_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047798.1_1107795_1111449_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047798.1_1111449_1114926_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047798.1_1115085_1115661_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047798.1_1115676_1116201_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047798.1_1116205_1116781_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047798.1_1117706_1119038_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047798.1_1119388_1120594_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047798.1_1120583_1121963_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047798.1_1122204_1123134_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047798.1_1123582_1124827_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047798.1_1124935_1126126_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047798.1_1126433_1127561_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047798.1_1127921_1128299_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047798.1_1128714_1129308_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047798.1_1129371_1129755_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047798.1_1129885_1132291_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047798.1_1132283_1132712_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047798.1_1132723_1133053_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047798.1_1133045_1134542_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	4	1263210-1263402	3,1	CRISPRCasFinder,CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCACCCCAACTTGCA,TGTTGGGGCCCCACCCCAACT	25,21	4	13	1263235-1263266|1263235-1263266|1263235-1263266|1263292-1263324|1263292-1263324|1263292-1263324|1263292-1263324|1263231-1263266|1263231-1263266|1263231-1263266|1263346-1263381|1263346-1263381|1263346-1263381	NZ_CP047798.1_1010228-1010197|NZ_CP047798.1_1010286-1010255|NZ_CP047798.1_2494571-2494540|NZ_CP047798.1_983859-983827|NZ_CP047798.1_983918-983886|NZ_CP047798.1_983977-983945|NZ_CP047798.1_1217127-1217095|NZ_CP047798.1_1010232-1010197|NZ_CP047798.1_1010290-1010255|NZ_CP047798.1_2494575-2494540|NZ_CP047798.1_1103027-1102992|NZ_CP047798.1_1969827-1969792|NZ_CP047798.1_1619469-1619504	NA:NA	2,3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|34aa|up_1|NZ_CP047798.1_1261523_1261625_-,NA|69aa|down_9|NZ_CP047798.1_1276296_1276503_-	NA|319aa|up_9|NZ_CP047798.1_1251535_1252492_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_8|NZ_CP047798.1_1252478_1253450_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_7|NZ_CP047798.1_1253856_1254828_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_6|NZ_CP047798.1_1254945_1257051_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_5|NZ_CP047798.1_1257013_1257412_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|289aa|up_4|NZ_CP047798.1_1258213_1259080_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_3|NZ_CP047798.1_1259099_1259600_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|502aa|up_2|NZ_CP047798.1_1259940_1261446_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|34aa|up_1|NZ_CP047798.1_1261523_1261625_-	NA	NA|306aa|up_0|NZ_CP047798.1_1261715_1262633_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|183aa|down_0|NZ_CP047798.1_1263435_1263984_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|353aa|down_1|NZ_CP047798.1_1264141_1265200_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NZ_CP047798.1_1265439_1266954_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|326aa|down_3|NZ_CP047798.1_1266946_1267924_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_4|NZ_CP047798.1_1268144_1269926_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_5|NZ_CP047798.1_1269937_1271821_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|647aa|down_6|NZ_CP047798.1_1272091_1274032_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_7|NZ_CP047798.1_1274505_1275510_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|237aa|down_8|NZ_CP047798.1_1275493_1276204_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|69aa|down_9|NZ_CP047798.1_1276296_1276503_-	NA
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	5	2247396-2247529	2	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	1	1	2247476-2247512	NZ_CP047798.1_2243906-2243942	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|103aa|down_1|NZ_CP047798.1_2249162_2249471_-,NA|89aa|down_2|NZ_CP047798.1_2249610_2249877_-,NA|109aa|down_8|NZ_CP047798.1_2259659_2259986_+,NA|96aa|down_9|NZ_CP047798.1_2259988_2260276_+	NA|204aa|up_9|NZ_CP047798.1_2229293_2229905_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047798.1_2230451_2231729_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047798.1_2232640_2234464_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047798.1_2234602_2235019_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047798.1_2235249_2235942_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP047798.1_2236106_2236871_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047798.1_2237024_2237705_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047798.1_2237728_2239282_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047798.1_2239398_2240757_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1054aa|up_0|NZ_CP047798.1_2241225_2244387_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047798.1_2248169_2249036_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047798.1_2249162_2249471_-	NA	NA|89aa|down_2|NZ_CP047798.1_2249610_2249877_-	NA	NA|603aa|down_3|NZ_CP047798.1_2250160_2251969_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047798.1_2252100_2252493_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047798.1_2252494_2255356_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|253aa|down_6|NZ_CP047798.1_2255661_2256420_+	pfam04507, DUF576, Csa1 family	NA|258aa|down_7|NZ_CP047798.1_2256531_2257305_+	pfam04507, DUF576, Csa1 family	NA|109aa|down_8|NZ_CP047798.1_2259659_2259986_+	NA	NA|96aa|down_9|NZ_CP047798.1_2259988_2260276_+	NA
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	6	2331143-2331236	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTTTCTAACAAATAAATTTGAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047798.1_2330843_2330948_+,NA|35aa|down_2|NZ_CP047798.1_2333408_2333513_-	NA|453aa|up_9|NZ_CP047798.1_2320776_2322135_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047798.1_2322136_2323144_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047798.1_2323121_2324237_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047798.1_2324247_2324940_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047798.1_2324950_2325418_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047798.1_2325476_2326454_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047798.1_2326455_2327403_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047798.1_2327970_2328900_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047798.1_2329435_2330749_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047798.1_2330843_2330948_+	NA	NA|289aa|down_0|NZ_CP047798.1_2331375_2332242_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047798.1_2332568_2333255_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047798.1_2333408_2333513_-	NA	NA|480aa|down_3|NZ_CP047798.1_2333686_2335126_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047798.1_2335246_2336026_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047798.1_2336006_2336726_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047798.1_2336722_2337454_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047798.1_2337550_2338801_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047798.1_2339055_2339418_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047798.1_2339436_2340036_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	7	2522185-2522317	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_0|NZ_CP047798.1_2523227_2523410_+,NA|67aa|down_1|NZ_CP047798.1_2523391_2523592_-,NA|93aa|down_7|NZ_CP047798.1_2529947_2530226_-	NA|130aa|up_9|NZ_CP047798.1_2513660_2514050_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|315aa|up_8|NZ_CP047798.1_2514124_2515069_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_7|NZ_CP047798.1_2515085_2515454_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_6|NZ_CP047798.1_2515991_2516801_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047798.1_2516797_2517658_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047798.1_2517647_2518454_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|268aa|up_3|NZ_CP047798.1_2518458_2519262_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047798.1_2519501_2519939_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047798.1_2519952_2520351_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047798.1_2520699_2522136_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|61aa|down_0|NZ_CP047798.1_2523227_2523410_+	NA	NA|67aa|down_1|NZ_CP047798.1_2523391_2523592_-	NA	NA|555aa|down_2|NZ_CP047798.1_2523880_2525545_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047798.1_2525581_2526286_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047798.1_2526661_2527087_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047798.1_2527380_2528196_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|506aa|down_6|NZ_CP047798.1_2528420_2529938_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|93aa|down_7|NZ_CP047798.1_2529947_2530226_-	NA	NA|285aa|down_8|NZ_CP047798.1_2531100_2531955_+	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|807aa|down_9|NZ_CP047798.1_2532153_2534574_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family
GCF_009912815.1_ASM991281v1	NZ_CP047798	Staphylococcus aureus strain UP_378 chromosome, complete genome	8	2601785-2601873	6	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_0|NZ_CP047798.1_2601572_2601665_-,NA|364aa|down_0|NZ_CP047798.1_2601886_2602978_-,NA|77aa|down_5|NZ_CP047798.1_2606764_2606995_+	NA|452aa|up_9|NZ_CP047798.1_2582389_2583745_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|2460aa|up_8|NZ_CP047798.1_2584028_2591408_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_7|NZ_CP047798.1_2591730_2592837_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP047798.1_2592836_2593271_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP047798.1_2593282_2595415_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|517aa|up_4|NZ_CP047798.1_2595449_2597000_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_3|NZ_CP047798.1_2597680_2599486_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_2|NZ_CP047798.1_2599718_2600501_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_1|NZ_CP047798.1_2600568_2601426_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_0|NZ_CP047798.1_2601572_2601665_-	NA	NA|364aa|down_0|NZ_CP047798.1_2601886_2602978_-	NA	NA|326aa|down_1|NZ_CP047798.1_2603243_2604221_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047798.1_2604222_2604543_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047798.1_2604694_2605360_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047798.1_2605795_2606734_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047798.1_2606764_2606995_+	NA	NA|458aa|down_6|NZ_CP047798.1_2607668_2609042_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047798.1_2609499_2609913_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047798.1_2610112_2610556_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047798.1_2610676_2611387_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
