The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	0	24289	2720524	holin,terminase,capsid,protease,head,tail,portal	Staphylococcus_phage(100.0%)	28	NA	NA
WP_160176548.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|6484_7129_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_061563458.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_160176549.1|14065_17851_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.3	0.0e+00
WP_001153681.1|17840_17993_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18039_18327_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18384_18681_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|18830_19007_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19059_19167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19218_19473_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19484_20240_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|20430_20922_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|21448_21907_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|22001_22451_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|23135_23486_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23538_23799_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24109_24289_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	30223	32670	2720524		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991300.1|30223_31120_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645721.1|31120_31801_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31797_32670_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 3
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	37917	38319	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205103.1|37917_38319_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
>prophage 4
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	42515	44545	2720524		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|42515_43076_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275721.1|43447_44545_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
>prophage 5
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	48575	50859	2720524		Bacillus_virus(100.0%)	2	NA	NA
WP_000284427.1|48575_50045_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
WP_000164017.1|50037_50859_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
>prophage 6
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	54546	61313	2720524		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|54546_55842_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55950_56253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272062.1|56424_57117_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|57113_59306_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774567.1|59309_61313_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	7.5e-114
>prophage 7
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	68371	73399	2720524		Catovirus(33.33%)	5	NA	NA
WP_001231459.1|68371_69319_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001147862.1|69399_70761_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.4e-103
WP_000548781.1|70930_71461_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|71707_72778_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|72844_73399_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	76851	77265	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001622129.1|76851_77265_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.8	5.1e-17
>prophage 9
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	82178	82808	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|82178_82808_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	98296	100033	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000597236.1|98296_100033_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.3e-53
>prophage 11
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	116439	117168	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_001144055.1|116439_117168_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
>prophage 12
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	128163	128508	2720524		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|128163_128508_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 13
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	138141	138882	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|138141_138882_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 14
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	146610	150874	2720524		Staphylococcus_phage(80.0%)	5	NA	NA
WP_010922839.1|146610_147393_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_031928241.1|147673_148393_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	4.0e-25
WP_000713846.1|148427_149156_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	38.6	2.5e-27
WP_000764689.1|149309_150080_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
WP_001236362.1|150118_150874_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
>prophage 15
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	154126	155256	2720524	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|154126_155256_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 16
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	158771	198218	2720524	protease,tRNA,transposase	Staphylococcus_phage(91.18%)	42	NA	NA
WP_098686295.1|158771_159900_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_000627532.1|160102_160444_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_000669031.1|160484_161111_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000070666.1|161186_162182_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_001796416.1|162262_162913_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_072468941.1|163215_163671_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_000348383.1|163829_165308_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_031928240.1|165312_166314_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	1.0e-183
WP_000718111.1|166310_166568_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000672013.1|166633_167107_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001827685.1|167111_167858_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_160176553.1|168237_169830_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_000933821.1|170201_171395_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_031928239.1|171519_172428_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	2.9e-137
WP_000453324.1|172639_173473_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000623468.1|173722_174076_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_001200545.1|174072_174438_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000091443.1|174693_174996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|175254_175968_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492904.1|176703_177324_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168913.1|177490_178126_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030473.1|178422_178866_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001152694.1|178852_179296_-	competence protein ComK	NA	NA	NA	NA	NA
WP_031928201.1|179408_179879_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.5	6.5e-69
WP_000384171.1|180077_180302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032834.1|180576_181431_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989113.1|181517_182810_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_000221174.1|182809_183124_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_001261660.1|183766_185269_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_160176643.1|185762_186794_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	4.5e-195
WP_000493880.1|186800_187433_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_001159030.1|187443_188625_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008551.1|188637_189102_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_160176554.1|189223_190225_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_014937042.1|190336_190456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|190458_191286_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|191856_192258_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764418.1|192374_192938_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000526542.1|192934_193888_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_031928200.1|193997_195179_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_001108717.1|195470_197885_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_000836464.1|197906_198218_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
>prophage 17
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	205216	206485	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000284998.1|205216_206485_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	96.4	1.3e-55
>prophage 18
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	217601	222929	2720524		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091394.1|217601_218459_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	99.3	4.4e-71
WP_001048366.1|218487_219084_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118322.1|219104_222929_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	7.7e-83
>prophage 19
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	231669	233376	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862076.1|231669_233376_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	4.7e-274
>prophage 20
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	239981	242612	2720524	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186035.1|239981_241244_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.3	9.3e-86
WP_001279338.1|241337_242612_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 21
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	246380	250515	2720524		Staphylococcus_phage(50.0%)	4	NA	NA
WP_160176556.1|246380_247985_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	99.5	3.5e-114
WP_000291426.1|247971_249132_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_160176557.1|249245_249692_-	OsmC family protein	NA	NA	NA	NA	NA
WP_160176558.1|249771_250515_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.5	4.1e-17
>prophage 22
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	268346	271544	2720524		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226934.1|268346_271544_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.3	1.1e-135
>prophage 23
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	276477	278235	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|276477_278235_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 24
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	283119	291283	2720524		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080026.1|283119_283824_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_072468943.1|283823_285485_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849447.1|285984_287472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038313.1|287764_290395_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114464.1|290410_291283_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	37.4	1.7e-41
>prophage 25
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	295198	306351	2720524	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|295198_296119_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_014937037.1|296211_296334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|296530_298468_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|298894_300388_+	amino acid permease	NA	NA	NA	NA	NA
WP_001807711.1|300616_301144_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	2.4e-11
WP_001125540.1|301172_301373_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|301419_301776_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|301917_302526_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280025.1|302544_303474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|303478_303589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|303636_304938_+	trigger factor	NA	NA	NA	NA	NA
WP_031928195.1|305088_306351_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.9e-139
>prophage 26
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	315919	318550	2720524	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425356.1|315919_318550_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.8e-153
>prophage 27
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	328484	364092	2720524	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005764.1|328484_329489_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_031928192.1|329490_330516_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|330538_331678_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|331696_331957_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|332231_334511_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594987.1|334714_336988_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000364543.1|337009_337528_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_001058586.1|337956_340146_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|340157_340610_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|340606_341482_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|341942_343205_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044803.1|343220_344987_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	26.9	4.9e-16
WP_001827648.1|345318_345447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682645.1|345446_346220_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|346380_347655_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|347739_348162_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|348261_348444_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|348483_348630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985881.1|348866_349880_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409162.1|350191_351334_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.0	1.1e-32
WP_000066103.1|351334_352453_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567023.1|353141_353810_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283324.1|353811_356289_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734073.1|356631_359262_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|359324_359585_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|359588_360017_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|360031_360340_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|360624_361263_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|361265_362189_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|362200_363469_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|363468_364092_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 28
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	370769	373157	2720524		Lactococcus_phage(50.0%)	2	NA	NA
WP_000542326.1|370769_371990_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	34.6	8.5e-52
WP_001622271.1|372404_373157_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	40.9	1.9e-49
>prophage 29
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	380425	386589	2720524		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|380425_380887_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_160176644.1|380945_383093_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.8	3.5e-32
WP_001282573.1|383149_384124_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|384168_384420_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|384765_386589_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 30
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	390023	393131	2720524		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034717.1|390023_391856_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119019.1|391991_393131_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.0	3.0e-27
>prophage 31
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	399600	400548	2720524		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|399600_400548_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 32
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	403602	417330	2720524	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030077.1|403602_404994_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.5	1.6e-46
WP_072468919.1|405328_405952_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|405962_406781_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217237.1|406841_408641_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
WP_001283055.1|408864_409971_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624564.1|410101_410779_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683915.1|410781_411882_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062177.1|411995_413342_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|413351_414242_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|414367_415153_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|415194_416058_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095258.1|416044_416455_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|416730_417330_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 33
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	423503	424127	2720524		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223009.1|423503_424127_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	2.1e-30
>prophage 34
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	429671	432483	2720524		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_031928187.1|429671_431018_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	5.9e-62
WP_000202176.1|431010_432483_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 35
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	439982	446552	2720524		Indivirus(66.67%)	6	NA	NA
WP_001286934.1|439982_441320_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.2e-43
WP_000159865.1|441312_441543_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183379.1|441520_442402_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.2	1.5e-10
WP_001124985.1|442832_443285_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942206.1|443300_444980_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291530.1|445130_446552_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.7	5.1e-40
>prophage 36
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	453379	454786	2720524		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|453379_454786_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 37
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	459431	460916	2720524		Cyanophage(100.0%)	1	NA	NA
WP_000105075.1|459431_460916_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 38
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	466581	481007	2720524		Bacillus_phage(28.57%)	14	NA	NA
WP_000447733.1|466581_467469_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183432.1|467546_468053_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273372.1|468144_468876_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368647.1|468868_469411_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159580.1|469403_470141_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064074.1|470273_470999_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	6.0e-45
WP_000987760.1|470979_472731_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_160176563.1|472982_473912_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033750.1|473904_476067_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.5	7.0e-49
WP_000476856.1|476157_477072_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186906.1|477677_478223_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151999.1|478328_478577_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	6.4e-15
WP_001163808.1|478684_479638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902118.1|479627_481007_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
>prophage 39
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	490433	495923	2720524		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|490433_490706_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450565.1|491136_491709_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774683.1|491711_492437_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_160176645.1|492453_493398_+	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.0	2.1e-10
WP_000442481.1|493489_493939_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.4e-28
WP_000789524.1|494148_494349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269939.1|494756_495923_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
>prophage 40
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	499585	500161	2720524		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|499585_500161_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 41
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	503547	511054	2720524	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361547.1|503547_504750_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000049921.1|504736_505708_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525057.1|505731_508425_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|508746_510039_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362215.1|510367_511054_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	31.4	1.2e-07
>prophage 42
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	514745	515372	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|514745_515372_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 43
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	524696	525575	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_001133028.1|524696_525575_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.1e-19
>prophage 44
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	563959	573348	2720524		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282160.1|563959_564664_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|564908_565103_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|565114_565366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404632.1|565402_566527_+	virulence factor	NA	NA	NA	NA	NA
WP_000995282.1|566542_566980_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|567403_568360_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175742.1|568559_569039_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	4.5e-73
WP_000166049.1|569053_569893_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	3.0e-48
WP_000159902.1|569978_570512_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|570504_570933_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|570944_571445_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|571444_571666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342148.1|571857_573348_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 45
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	576756	578768	2720524		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|576756_577416_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166796.1|577412_578768_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	28.2	7.1e-15
>prophage 46
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	586436	587228	2720524		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|586436_587228_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 47
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	590761	596372	2720524	protease,lysis	Lactobacillus_phage(33.33%)	8	NA	NA
WP_000138414.1|590761_591898_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.0	2.2e-33
WP_001796534.1|591929_592559_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_061563408.1|592577_592847_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|593009_593318_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|593488_593689_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876215.1|593885_594287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275771.1|594411_595029_+|protease	protease	protease	NA	NA	NA	NA
WP_000216938.1|595106_596372_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.5	9.5e-14
>prophage 48
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	604214	605816	2720524		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|604214_605816_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 49
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	610241	617835	2720524		Indivirus(25.0%)	8	NA	NA
WP_160176566.1|610241_611093_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.2	2.6e-15
WP_000974853.1|611099_611741_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077577.1|611880_613695_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.1e-153
WP_000171798.1|613899_614244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000469973.1|614571_615558_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000946381.1|615550_616381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000052306.1|616367_617141_+	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	25.7	2.2e-05
WP_000571261.1|617133_617835_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	9.0e-14
>prophage 50
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	625329	627684	2720524		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153718.1|625329_626112_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.3e-26
WP_000173848.1|626113_627112_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.6	3.8e-34
WP_000604801.1|627117_627684_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	5.0e-23
>prophage 51
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	632003	633266	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000283026.1|632003_633266_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.6	2.6e-96
>prophage 52
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	642924	647318	2720524		Bacillus_phage(50.0%)	2	NA	NA
WP_001289594.1|642924_645327_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.1	5.1e-93
WP_025173910.1|645326_647318_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
>prophage 53
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	652941	654588	2720524		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|652941_654588_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 54
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	658257	659379	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691306.1|658257_659379_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 55
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	663528	669183	2720524		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|663528_664152_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380739.1|664531_665395_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|665468_665573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688134.1|665569_666547_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	2.3e-185
WP_001085655.1|666703_666973_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|667425_667575_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082546.1|667665_669183_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	1.8e-91
>prophage 56
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	679319	683595	2720524		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|679319_679853_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027140.1|679991_680180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623460.1|680292_680895_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670290.1|680891_681983_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000243879.1|681986_682718_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001796717.1|682692_683595_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.8	3.7e-20
>prophage 57
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	689374	703883	2720524	terminase,head,integrase,portal	Staphylococcus_phage(57.14%)	24	685555:685572	710044:710061
685555:685572	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_078103007.1|689374_690367_-|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.3e-52
WP_000158569.1|690896_692345_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
WP_000207540.1|692357_693632_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
WP_000090969.1|693618_694047_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000653928.1|694198_694687_-	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000835356.1|694963_695428_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_025174108.1|695424_695532_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000185174.1|695673_696204_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_000860977.1|696196_696508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000714365.1|696513_696672_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000945229.1|696686_696977_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000929467.1|696977_697916_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_076679818.1|697929_698424_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000818736.1|698504_699284_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_001004328.1|699284_699821_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000786635.1|699825_700092_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_000786995.1|700081_700399_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000072840.1|700485_700647_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000789021.1|700817_701099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000842951.1|701146_701359_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	83.3	6.8e-26
WP_001083979.1|701520_701886_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000554409.1|702032_702416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001183755.1|702427_703123_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.5	2.1e-07
WP_000146714.1|703175_703883_+|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
710044:710061	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 58
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	708500	708977	2720524		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448081.1|708500_708977_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	2.7e-22
>prophage 59
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	714920	721402	2720524		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|714920_715739_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001072707.1|716213_716756_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516248.1|716761_718771_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	3.1e-59
WP_000073338.1|718783_721402_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.5	6.5e-41
>prophage 60
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	730816	731860	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|730816_731860_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 61
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	736060	741604	2720524		Bacillus_virus(33.33%)	4	NA	NA
WP_000664766.1|736060_737347_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089944.1|737346_738612_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	2.0e-40
WP_001293306.1|738642_739356_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072468899.1|739360_741604_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.1e-84
>prophage 62
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	746742	758557	2720524	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|746742_747714_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282307.1|747728_748646_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|748815_749166_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043642.1|749552_751670_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020856.1|751674_751992_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|751988_752273_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|752293_753469_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|753489_753957_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_078068175.1|754246_758557_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 63
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	762830	763601	2720524		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|762830_763601_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 64
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	768374	782047	2720524	protease,tRNA	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|768374_769778_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|769843_770389_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015604.1|770385_771282_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	4.6e-31
WP_000195251.1|771699_773007_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_078159632.1|773162_775238_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	2.3e-105
WP_160175287.1|775411_776284_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672866.1|776455_777700_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041652.1|777727_778846_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	1.2e-49
WP_000110245.1|779074_779983_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|780004_781171_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176404.1|781279_782047_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 65
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	795429	797486	2720524		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|795429_796161_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|796275_796509_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|796751_797486_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 66
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	807856	809851	2720524		Moumouvirus(100.0%)	1	NA	NA
WP_000579546.1|807856_809851_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 67
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	812998	813934	2720524	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161292.1|812998_813934_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 68
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	818937	821194	2720524		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722167.1|818937_820137_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.7	2.7e-42
WP_000933956.1|820352_820571_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368225.1|820570_821194_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 69
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	824560	825172	2720524		Pandoravirus(100.0%)	1	NA	NA
WP_001040247.1|824560_825172_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	2.1e-27
>prophage 70
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	829139	833750	2720524		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|829139_830240_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767035.1|830241_831516_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016170.1|831533_832415_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	6.0e-31
WP_001178613.1|832442_833750_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 71
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	837683	840437	2720524	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384702.1|837683_840437_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	4.7e-90
>prophage 72
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	860008	860197	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245799.1|860008_860197_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	8.5e-20
>prophage 73
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	869081	871051	2720524		Staphylococcus_virus(50.0%)	3	NA	NA
WP_000192697.1|869081_869294_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	69.2	8.1e-19
WP_000765705.1|869277_869424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857477.1|870091_871051_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.6	1.9e-35
>prophage 74
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	884597	889155	2720524		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|884597_884912_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249280.1|885084_887433_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	8.5e-16
WP_000161953.1|887442_889155_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	1.8e-15
>prophage 75
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	894236	895295	2720524	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|894236_895295_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 76
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	907239	910136	2720524		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|907239_907722_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263798.1|907723_908266_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814569.1|908335_908725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|908727_908982_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757595.1|909206_910136_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.3e-12
>prophage 77
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	921654	923502	2720524		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|921654_923502_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 78
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	931636	935277	2720524		Mycoplasma_phage(50.0%)	4	NA	NA
WP_000433547.1|931636_932731_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.8e-37
WP_001020625.1|932743_933283_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455589.1|933426_933702_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|933870_935277_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 79
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	939943	940495	2720524		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|939943_940495_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 80
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	946612	950991	2720524		Bacillus_virus(50.0%)	5	NA	NA
WP_001289619.1|946612_946846_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040046.1|947081_948800_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|948802_949069_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505969.1|949222_949765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685080.1|949818_950991_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	2.0e-74
>prophage 81
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	954107	968868	2720524		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921979.1|954107_955508_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	2.0e-12
WP_000273264.1|955500_956307_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101904.1|956572_957820_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709286.1|957841_959320_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	1.9e-77
WP_000238657.1|959334_959901_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
WP_000030827.1|959903_960932_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000483713.1|960924_962409_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032752.1|962387_964577_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666803.1|964569_965241_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|965242_965506_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174048.1|965505_966210_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_001010404.1|966213_967338_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001622461.1|967324_967807_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225844.1|968007_968868_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.8	2.0e-39
>prophage 82
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	979244	983009	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074512.1|979244_983009_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	8.7e-55
>prophage 83
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	986661	987663	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676571.1|986661_987663_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 84
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	995968	999494	2720524		Enterococcus_phage(50.0%)	6	NA	NA
WP_001796516.1|995968_996259_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	3.4e-07
WP_001794249.1|996322_996454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081317.1|996500_997460_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|997951_998308_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001796515.1|998474_998765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571169.1|998852_999494_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.8e-19
>prophage 85
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1009634	1014845	2720524	protease	Pithovirus(33.33%)	3	NA	NA
WP_001796514.1|1009634_1011959_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_031928147.1|1012177_1012981_-	TerC family protein	NA	A0A068EP98	Bacillus_phage	39.5	5.6e-28
WP_001049954.1|1013282_1014845_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.3e-36
>prophage 86
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1033774	1035583	2720524		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1033774_1035583_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 87
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1041397	1043367	2720524		Bacillus_virus(100.0%)	2	NA	NA
WP_000427779.1|1041397_1042378_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001067039.1|1042380_1043367_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 88
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1047018	1049032	2720524		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_001258350.1|1047018_1047960_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	2.1e-05
WP_160176582.1|1047949_1049032_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	2.2e-19
>prophage 89
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1056964	1061591	2720524		Agrobacterium_phage(50.0%)	2	NA	NA
WP_000353969.1|1056964_1059574_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044231.1|1059776_1061591_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 90
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1066882	1070536	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000154909.1|1066882_1070536_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	3.5e-24
>prophage 91
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1081291	1088339	2720524		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185324.1|1081291_1082221_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	2.8e-39
WP_000138487.1|1082613_1083858_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1083966_1085157_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838022.1|1085464_1086592_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1086952_1087330_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035064.1|1087745_1088339_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.5e-25
>prophage 92
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1098273	1101901	2720524		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009695.1|1098273_1099749_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.2e-47
WP_000046076.1|1099879_1101088_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|1101541_1101901_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 93
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1105945	1108614	2720524		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1105945_1107160_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129643.1|1107156_1108614_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	8.9e-40
>prophage 94
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1121822	1125345	2720524		environmental_halophage(50.0%)	3	NA	NA
WP_000807674.1|1121822_1123064_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.8e-110
WP_000205572.1|1123178_1124486_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1124583_1125345_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 95
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1128829	1129855	2720524		Bacillus_virus(100.0%)	1	NA	NA
WP_000571205.1|1128829_1129855_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	1.8e-26
>prophage 96
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1132924	1138101	2720524		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589550.1|1132924_1133281_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147956.1|1133424_1133745_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	9.1e-06
WP_000422908.1|1133894_1134434_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150033.1|1134516_1135233_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	3.4e-16
WP_000974451.1|1135380_1135803_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1136200_1136695_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255550.1|1136850_1137468_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|1137540_1138101_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 97
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1141504	1142748	2720524		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1141504_1141705_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001622483.1|1142061_1142748_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	2.9e-33
>prophage 98
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1154477	1178796	2720524	integrase,transposase	Staphylococcus_phage(84.85%)	37	1153396:1153411	1181912:1181927
1153396:1153411	attL	ATTATCGATAATATAA	NA	NA	NA	NA
WP_000746602.1|1154477_1155200_+	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	29.3	1.6e-18
WP_001043552.1|1155366_1156167_-	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
WP_001035612.1|1156950_1157505_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_001001286.1|1157723_1158392_-	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	33.7	4.5e-15
WP_001805416.1|1158384_1158573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001024507.1|1158685_1159069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000360020.1|1159194_1159725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_098686295.1|1159953_1161083_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_001065097.1|1161211_1161466_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|1161480_1161723_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|1161726_1162095_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|1162107_1162512_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|1162520_1162739_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|1162745_1163639_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_073394849.1|1164139_1164757_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|1164837_1165758_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|1165759_1167703_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1167711_1167975_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|1167983_1168244_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|1168248_1168551_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|1168645_1168807_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|1168803_1169127_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|1169181_1169562_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|1169548_1169746_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|1169761_1170514_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|1170564_1170894_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|1170882_1171098_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854074.1|1171094_1171376_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
WP_031908048.1|1171372_1171546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1171508_1172222_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1172237_1173170_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1173175_1173517_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|1173720_1173903_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|1174002_1174467_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_061563463.1|1174525_1175551_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.4	6.0e-176
WP_000595616.1|1176699_1177719_-	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
WP_000791399.1|1177740_1178796_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
1181912:1181927	attR	TTATATTATCGATAAT	NA	NA	NA	NA
>prophage 99
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1182684	1184661	2720524		uncultured_virus(100.0%)	2	NA	NA
WP_000240642.1|1182684_1184301_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1184376_1184661_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 100
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1191784	1205849	2720524	tRNA	uncultured_Caudovirales_phage(16.67%)	13	NA	NA
WP_000688492.1|1191784_1192501_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_031785433.1|1192572_1192680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001253295.1|1192869_1193829_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000141419.1|1193825_1195310_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	4.0e-19
WP_160176587.1|1195458_1196409_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001052281.1|1196592_1197843_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	3.4e-40
WP_000581077.1|1198051_1198276_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_073394851.1|1198335_1199364_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_001283613.1|1199718_1200354_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602061.1|1200606_1202535_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	7.1e-53
WP_072468947.1|1202694_1202808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000106320.1|1202899_1204510_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.6	3.3e-19
WP_000159047.1|1204823_1205849_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
>prophage 101
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1209614	1214338	2720524		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_000047819.1|1209614_1211384_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	7.0e-63
WP_000196911.1|1211383_1211638_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_072399972.1|1211759_1212779_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_061563466.1|1212808_1214338_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
>prophage 102
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1229320	1232704	2720524		Bacillus_phage(50.0%)	5	NA	NA
WP_001041107.1|1229320_1230091_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
WP_001190825.1|1230065_1230545_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001052491.1|1230546_1230873_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_031928242.1|1230991_1231993_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_000621175.1|1232341_1232704_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
>prophage 103
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1237853	1239881	2720524		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_160176588.1|1237853_1239881_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	1.5e-24
>prophage 104
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1245555	1247076	2720524		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178935.1|1245555_1247076_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 105
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1254276	1254924	2720524		Moumouvirus(100.0%)	1	NA	NA
WP_001187625.1|1254276_1254924_+	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.5	9.5e-10
>prophage 106
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1260833	1261229	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|1260833_1261229_-	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 107
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1271662	1279415	2720524		Catovirus(25.0%)	9	NA	NA
WP_000723406.1|1271662_1272793_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.4e-27
WP_000048712.1|1272816_1273446_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000120494.1|1273473_1274712_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000654179.1|1274738_1275263_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000697337.1|1275369_1275789_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_072492072.1|1275785_1276883_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	6.1e-41
WP_000248725.1|1276915_1277752_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_031928244.1|1277738_1278815_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000273353.1|1278815_1279415_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	4.8e-32
>prophage 108
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1287219	1288830	2720524		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159966.1|1287219_1288830_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.1e-146
>prophage 109
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1296768	1300605	2720524		Geobacillus_virus(50.0%)	4	NA	NA
WP_001242295.1|1296768_1298070_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
WP_001083321.1|1298353_1299016_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000160304.1|1299330_1300041_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000070865.1|1300161_1300605_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
>prophage 110
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1310216	1313037	2720524		Bacillus_phage(50.0%)	2	NA	NA
WP_160176592.1|1310216_1310999_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	3.7e-08
WP_160176593.1|1311231_1313037_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	7.5e-97
>prophage 111
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1319309	1326668	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160176594.1|1319309_1326668_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	24.2	3.4e-18
>prophage 112
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1330264	1331173	2720524		Klosneuvirus(100.0%)	1	NA	NA
WP_000162593.1|1330264_1331173_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.3	1.2e-26
>prophage 113
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1346999	1347968	2720524		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_031918555.1|1346999_1347968_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 114
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1358174	1359737	2720524		Vibrio_phage(100.0%)	1	NA	NA
WP_000792328.1|1358174_1359737_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.2	1.2e-18
>prophage 115
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1373108	1375065	2720524		Orpheovirus(50.0%)	3	NA	NA
WP_001622010.1|1373108_1373849_+	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	2.3e-15
WP_001622009.1|1373776_1373998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031928247.1|1374216_1375065_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.0	1.9e-42
>prophage 116
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1378577	1379432	2720524		Clostridium_phage(100.0%)	1	NA	NA
WP_001044440.1|1378577_1379432_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	2.2e-06
>prophage 117
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1384988	1389823	2720524		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_000130128.1|1384988_1386653_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	3.6e-45
WP_001622005.1|1386941_1387142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000655242.1|1387123_1387306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000204279.1|1388386_1389823_-	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	3.5e-57
>prophage 118
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1392864	1394531	2720524		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000027572.1|1392864_1393725_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.1e-10
WP_000389669.1|1393721_1394531_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	4.3e-20
>prophage 119
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1418229	1421397	2720524		Leptospira_phage(100.0%)	1	NA	NA
WP_000592293.1|1418229_1421397_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 120
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1433430	1434036	2720524		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|1433430_1434036_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 121
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1453013	1453823	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717388.1|1453013_1453823_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 122
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1457743	1462363	2720524		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000733941.1|1457743_1458244_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
WP_000417008.1|1458606_1459560_+	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000684154.1|1459651_1460776_-	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_072468848.1|1461724_1462363_-	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
>prophage 123
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1476112	1476748	2720524		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285454.1|1476112_1476748_-	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	4.2e-10
>prophage 124
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1484628	1485510	2720524		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730049.1|1484628_1485510_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.9e-62
>prophage 125
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1498316	1499216	2720524		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524843.1|1498316_1499216_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	4.7e-15
>prophage 126
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1511312	1512521	2720524		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|1511312_1512521_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 127
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1516259	1522820	2720524		Planktothrix_phage(25.0%)	8	NA	NA
WP_160175342.1|1516259_1516925_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	2.7e-36
WP_000761401.1|1516924_1517980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000249501.1|1518115_1518790_+	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.6	1.2e-52
WP_031928255.1|1518782_1520156_+	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	8.7e-13
WP_000977035.1|1520322_1520766_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000793171.1|1520762_1521218_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000372850.1|1521394_1521958_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000340143.1|1522091_1522820_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	1.5e-27
>prophage 128
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1533238	1534273	2720524		Bacillus_virus(100.0%)	1	NA	NA
WP_000655972.1|1533238_1534273_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 129
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1555599	1557159	2720524		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|1555599_1557159_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 130
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1573000	1573732	2720524		Bacillus_virus(100.0%)	1	NA	NA
WP_160176600.1|1573000_1573732_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.3e-23
>prophage 131
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1581555	1587334	2720524		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000594516.1|1581555_1582485_+	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
WP_000916696.1|1583052_1584000_+	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	78.7	4.0e-142
WP_001056918.1|1584001_1584979_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	1.4e-142
WP_000200952.1|1585037_1585505_-	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000286884.1|1585515_1586208_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000971558.1|1586218_1587334_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	25.0	1.2e-20
>prophage 132
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1590795	1596926	2720524		Bacillus_phage(66.67%)	6	NA	NA
WP_160176601.1|1590795_1592529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	4.8e-32
WP_001064831.1|1592577_1594317_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.9	8.7e-34
WP_000301894.1|1594694_1594862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000482647.1|1594888_1594996_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000779354.1|1595129_1595516_-	GtrA family protein	NA	NA	NA	NA	NA
WP_001176860.1|1595783_1596926_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	6.9e-56
>prophage 133
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1615298	1616525	2720524		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948985.1|1615298_1616525_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.6	8.6e-20
>prophage 134
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1620218	1624645	2720524		Pandoravirus(50.0%)	4	NA	NA
WP_000700906.1|1620218_1621571_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	35.8	6.6e-13
WP_000026186.1|1621632_1622820_-	MFS transporter	NA	NA	NA	NA	NA
WP_000072159.1|1623213_1623990_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000923514.1|1623982_1624645_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.0	2.7e-20
>prophage 135
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1630877	1632435	2720524		Bacillus_virus(50.0%)	2	NA	NA
WP_000590515.1|1630877_1631627_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
WP_000173856.1|1631619_1632435_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	4.7e-14
>prophage 136
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1640374	1641193	2720524		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824951.1|1640374_1641193_-	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	29.5	3.2e-10
>prophage 137
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1645736	1646432	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000217460.1|1645736_1646432_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	6.6e-09
>prophage 138
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1649984	1657171	2720524		Bacillus_phage(66.67%)	6	NA	NA
WP_031928264.1|1649984_1652846_-	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
WP_000755944.1|1652847_1653240_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_072468810.1|1653371_1655180_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.7	2.4e-95
WP_000678763.1|1655463_1655730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000217713.1|1655869_1656178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000721337.1|1656304_1657171_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
>prophage 139
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1676565	1677261	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382895.1|1676565_1677261_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	8.8e-38
>prophage 140
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1686675	1687668	2720524		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|1686675_1687668_+	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 141
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1696963	1703346	2720524		Powai_lake_megavirus(33.33%)	5	NA	NA
WP_001228154.1|1696963_1697932_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.9	1.2e-11
WP_000240665.1|1698064_1698409_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000206034.1|1698450_1698861_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000473692.1|1699240_1701307_-	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_031928267.1|1701606_1703346_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	23.9	3.0e-34
>prophage 142
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1709771	1712764	2720524	protease	Streptococcus_phage(50.0%)	2	NA	NA
WP_000262599.1|1709771_1710293_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
WP_001063338.1|1710655_1712764_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.5e-117
>prophage 143
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1722006	1726197	2720524		uncultured_virus(50.0%)	3	NA	NA
WP_000024132.1|1722006_1724415_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.7	4.9e-128
WP_000076662.1|1724902_1725109_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000161365.1|1725198_1726197_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	3.5e-35
>prophage 144
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1733502	1738383	2720524		Staphylococcus_phage(66.67%)	4	NA	NA
WP_000725216.1|1733502_1734240_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.7	6.1e-05
WP_000379831.1|1734601_1736413_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.7e-35
WP_000996740.1|1736917_1737406_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000751266.1|1737681_1738383_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	3.1e-38
>prophage 145
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1766555	1776667	2720524	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_160176608.1|1766555_1767893_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.4	2.5e-20
WP_001237623.1|1768146_1768563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031407.1|1768685_1769576_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001130051.1|1769771_1771268_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001796575.1|1771563_1771893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001172328.1|1771955_1773551_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	37.0	6.9e-78
WP_001028779.1|1773744_1774188_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000011688.1|1774467_1774680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000038850.1|1774957_1776667_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	2.9e-58
>prophage 146
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1781543	1783927	2720524		Enterococcus_phage(100.0%)	2	NA	NA
WP_000173331.1|1781543_1782080_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
WP_001071717.1|1782076_1783927_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
>prophage 147
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1788965	1789463	2720524		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|1788965_1789463_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 148
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1792898	1793654	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_000923765.1|1792898_1793654_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
>prophage 149
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1820570	1822430	2720524		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125632.1|1820570_1822430_+	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	1.3e-14
>prophage 150
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1852052	1852745	2720524		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185857.1|1852052_1852745_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	1.7e-28
>prophage 151
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1865141	1866155	2720524		Faustovirus(100.0%)	1	NA	NA
WP_160176614.1|1865141_1866155_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	21.9	1.4e-07
>prophage 152
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1885273	1886032	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|1885273_1886032_+	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 153
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1889345	1892474	2720524		Lactococcus_phage(33.33%)	5	NA	NA
WP_001059079.1|1889345_1889546_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_001054109.1|1889672_1890242_-	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_000779134.1|1890501_1890897_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000491382.1|1890964_1891318_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000742837.1|1891634_1892474_-	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
>prophage 154
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1902562	1911601	2720524	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_160176618.1|1902562_1904497_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	7.4e-143
WP_000819075.1|1904533_1907197_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	7.9e-119
WP_000449218.1|1907284_1908097_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000177475.1|1908422_1909937_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.0	2.6e-90
WP_000884335.1|1910314_1911601_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
>prophage 155
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1918287	1928283	2720524		Bacillus_phage(40.0%)	7	NA	NA
WP_000375647.1|1918287_1919688_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095327.1|1919965_1921249_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000101976.1|1922438_1923140_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871607.1|1923152_1924979_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_001060151.1|1924971_1926306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160176619.1|1926306_1927095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088649.1|1927482_1928283_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
>prophage 156
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1931848	1933726	2720524		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000065395.1|1931848_1933726_+	restriction endonuclease subunit M	NA	A0A142K7G3	Mycobacterium_phage	27.2	1.2e-33
>prophage 157
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1939348	1940479	2720524	transposase	Paenibacillus_phage(66.67%)	3	NA	NA
WP_000196444.1|1939348_1939630_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
WP_160176620.1|1939671_1939920_+|transposase	IS3 family transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	89.7	1.4e-25
WP_160176648.1|1939900_1940479_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	57.3	4.6e-56
>prophage 158
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1984169	1988379	2720524		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000136627.1|1984169_1985168_-	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.9	2.0e-14
WP_000924996.1|1985164_1986160_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_001045124.1|1986175_1987168_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000570806.1|1987398_1988379_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.4	1.6e-40
>prophage 159
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	1996645	1997848	2720524		Tupanvirus(100.0%)	1	NA	NA
WP_001223695.1|1996645_1997848_+	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	6.7e-09
>prophage 160
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2001700	2002681	2720524		Catovirus(100.0%)	1	NA	NA
WP_160176623.1|2001700_2002681_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.4	4.6e-48
>prophage 161
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2007629	2008229	2720524		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|2007629_2008229_+	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 162
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2025870	2032435	2720524		Catovirus(50.0%)	6	NA	NA
WP_000037324.1|2025870_2026557_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
WP_000565293.1|2026559_2027324_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_160176625.1|2027343_2029167_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.9	3.0e-29
WP_000459062.1|2029156_2030185_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_001028280.1|2030197_2031307_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000413171.1|2031310_2032435_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
>prophage 163
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2039453	2041938	2720524		Bacillus_phage(50.0%)	2	NA	NA
WP_000779511.1|2039453_2040716_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	1.2e-21
WP_000723456.1|2040792_2041938_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	4.1e-24
>prophage 164
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2045278	2048278	2720524		Indivirus(50.0%)	4	NA	NA
WP_001013475.1|2045278_2046238_+	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
WP_000356967.1|2046299_2046503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171926.1|2046682_2047195_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000590842.1|2047537_2048278_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	1.7e-39
>prophage 165
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2053126	2060302	2720524		Tupanvirus(100.0%)	1	NA	NA
WP_160176649.1|2053126_2060302_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.9	1.3e-67
>prophage 166
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2065160	2066345	2720524		Klosneuvirus(100.0%)	1	NA	NA
WP_001084425.1|2065160_2066345_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	3.1e-35
>prophage 167
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2082939	2084532	2720524		Bacillus_virus(100.0%)	1	NA	NA
WP_000067369.1|2082939_2084532_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	2.9e-15
>prophage 168
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2093083	2095145	2720524		Pontimonas_phage(50.0%)	2	NA	NA
WP_000166909.1|2093083_2093662_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	1.3e-13
WP_000818909.1|2094047_2095145_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
>prophage 169
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2105548	2110907	2720524		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000127975.1|2105548_2107105_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
WP_000837099.1|2107101_2108070_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000894660.1|2108657_2110907_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
>prophage 170
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2122054	2123560	2720524		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008393.1|2122054_2123560_-	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	3.5e-39
>prophage 171
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2136081	2137611	2720524		Vibrio_phage(100.0%)	1	NA	NA
WP_000838200.1|2136081_2137611_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	49.4	8.2e-12
>prophage 172
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2144827	2145871	2720524		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000645598.1|2144827_2145871_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	27.7	2.7e-14
>prophage 173
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2155198	2159738	2720524		Catovirus(50.0%)	3	NA	NA
WP_000975339.1|2155198_2156920_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.7e-11
WP_000608820.1|2157063_2157738_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925389.1|2157998_2159738_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.6e-62
>prophage 174
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2163495	2164932	2720524		Pandoravirus(100.0%)	1	NA	NA
WP_000164000.1|2163495_2164932_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	4.8e-30
>prophage 175
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2173458	2175120	2720524		Arthrobacter_phage(50.0%)	2	NA	NA
WP_000736796.1|2173458_2174409_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	2.6e-16
WP_000570084.1|2174460_2175120_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	36.6	3.4e-23
>prophage 176
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2187081	2191521	2720524		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549267.1|2187081_2191521_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 177
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2208755	2209433	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911015.1|2208755_2209433_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	1.0e-30
>prophage 178
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2227673	2230408	2720524		Tupanvirus(50.0%)	3	NA	NA
WP_000854324.1|2227673_2228474_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	41.9	6.8e-42
WP_001191950.1|2228463_2229408_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000280808.1|2229385_2230408_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
>prophage 179
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2250186	2251029	2720524		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209476.1|2250186_2251029_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	3.8e-11
>prophage 180
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2260949	2269383	2720524		Staphylococcus_phage(60.0%)	10	NA	NA
WP_000655697.1|2260949_2262053_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.1	1.1e-10
WP_001621659.1|2262714_2263560_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000373079.1|2263713_2264595_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000157348.1|2264624_2264828_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001218729.1|2264839_2265937_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_001052483.1|2266022_2266214_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|2266457_2266754_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|2266774_2267278_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|2267329_2267572_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000237578.1|2269245_2269383_-	hypothetical protein	NA	Q4ZE80	Staphylococcus_phage	64.4	9.8e-10
>prophage 181
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2275866	2277390	2720524		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930500.1|2275866_2277390_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 182
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2286346	2289379	2720524		Klosneuvirus(50.0%)	2	NA	NA
WP_000264071.1|2286346_2287813_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424959.1|2287837_2289379_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.2	9.5e-24
>prophage 183
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2295359	2297093	2720524	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
WP_000041875.1|2295359_2296064_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	1.5e-29
WP_000159788.1|2296766_2297093_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	2.5e-11
>prophage 184
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2309662	2312471	2720524		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000028601.1|2309662_2311219_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.7	1.1e-282
WP_000072578.1|2311211_2312471_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.1	2.2e-47
>prophage 185
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2335344	2341570	2720524		Lactococcus_phage(33.33%)	5	NA	NA
WP_000634103.1|2335344_2336250_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	3.2e-48
WP_000569277.1|2337664_2338690_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.3e-32
WP_000467994.1|2338693_2339353_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000825537.1|2339389_2340232_+	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_001170274.1|2340565_2341570_+	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
>prophage 186
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2358220	2359918	2720524		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109055.1|2358220_2359918_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.1	8.7e-55
>prophage 187
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2368754	2369372	2720524		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272125.1|2368754_2369372_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	7.1e-47
>prophage 188
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2373278	2376376	2720524	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
WP_000279924.1|2373278_2374118_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	1.3e-56
WP_001051142.1|2374402_2376376_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
>prophage 189
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2382259	2384724	2720524		Tupanvirus(50.0%)	2	NA	NA
WP_001252527.1|2382259_2383612_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
WP_000933774.1|2383758_2384724_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
>prophage 190
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2393980	2404253	2720524	tRNA,protease	Klosneuvirus(16.67%)	10	NA	NA
WP_001176731.1|2393980_2395276_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.2	1.4e-12
WP_000551283.1|2395280_2395820_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001167886.1|2396077_2398171_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000148605.1|2398399_2399281_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000057594.1|2399459_2400392_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000167941.1|2400607_2401411_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.8	5.1e-21
WP_001154303.1|2401388_2401754_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000613719.1|2401750_2402227_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_031785444.1|2402620_2402713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288202.1|2402765_2404253_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
>prophage 191
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2423168	2425625	2720524	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897128.1|2423168_2425625_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.3	4.7e-134
>prophage 192
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2431635	2436418	2720524	tRNA	Catovirus(50.0%)	8	NA	NA
WP_000631980.1|2431635_2433036_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
WP_031929039.1|2433028_2433433_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000390332.1|2433440_2434187_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000664731.1|2434186_2434711_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000872878.1|2434791_2435361_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_160176637.1|2435475_2435619_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001074473.1|2435674_2435857_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001288302.1|2435869_2436418_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
>prophage 193
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2440101	2451055	2720524		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000918680.1|2440101_2443653_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
WP_001827373.1|2443816_2447413_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	1.9e-67
WP_000031892.1|2447549_2447804_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001142337.1|2447901_2448315_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_001137495.1|2448380_2448851_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_000090315.1|2448973_2451055_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
>prophage 194
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2454085	2455273	2720524		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250816.1|2454085_2455273_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.8	8.8e-46
>prophage 195
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2461819	2462482	2720524		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067257.1|2461819_2462482_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	36.9	3.1e-24
>prophage 196
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2485981	2489302	2720524		Burkholderia_virus(50.0%)	2	NA	NA
WP_000347068.1|2485981_2487382_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	2.1e-54
WP_001100830.1|2487925_2489302_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	1.8e-21
>prophage 197
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2492969	2493626	2720524		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|2492969_2493626_+	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 198
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2504929	2506252	2720524		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_031928154.1|2504929_2506252_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.1	1.4e-108
>prophage 199
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2514440	2517794	2720524		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_000180234.1|2514440_2515736_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
WP_001796423.1|2515763_2516285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200749.1|2516783_2517794_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	1.5e-33
>prophage 200
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2531165	2531726	2720524	integrase	Streptococcus_phage(100.0%)	1	2523761:2523775	2536407:2536421
2523761:2523775	attL	TATTATCATTGCATT	NA	NA	NA	NA
WP_001044966.1|2531165_2531726_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|2531165_2531726_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
2536407:2536421	attR	TATTATCATTGCATT	NA	NA	NA	NA
>prophage 201
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2542810	2543554	2720524		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|2542810_2543554_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 202
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2550489	2554448	2720524		Streptomyces_phage(33.33%)	3	NA	NA
WP_000832260.1|2550489_2550888_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
WP_000793048.1|2551004_2552300_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	1.5e-14
WP_000817954.1|2552720_2554448_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
>prophage 203
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2557677	2558475	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|2557677_2558475_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 204
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2564998	2566042	2720524		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030756.1|2564998_2566042_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 205
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2570421	2571183	2720524		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|2570421_2571183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 206
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2575903	2576701	2720524		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|2575903_2576701_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 207
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2581962	2582436	2720524		Pandoravirus(100.0%)	1	NA	NA
WP_000844823.1|2581962_2582436_+	cupin	NA	A0A291AU44	Pandoravirus	38.2	3.2e-15
>prophage 208
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2589450	2595730	2720524		Enterococcus_phage(33.33%)	6	NA	NA
WP_000820900.1|2589450_2590017_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
WP_000148819.1|2590018_2590477_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000358502.1|2590479_2591163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469886.1|2591334_2592210_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000737145.1|2592428_2594060_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	8.8e-12
WP_000857605.1|2594056_2595730_+	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
>prophage 209
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2600706	2602080	2720524		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952028.1|2600706_2602080_+	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.8	2.3e-45
>prophage 210
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2613701	2623546	2720524		Staphylococcus_phage(12.5%)	12	NA	NA
WP_000931231.1|2613701_2614541_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.9e-55
WP_000702775.1|2614672_2615656_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000244415.1|2615727_2616783_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2616782_2617469_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2617443_2617917_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|2618257_2618698_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|2618977_2619562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|2619660_2620374_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2620377_2620797_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|2620798_2621467_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000604517.1|2621817_2622411_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|2622394_2623546_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 211
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2626690	2649798	2720524		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000098285.1|2626690_2628631_+	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
WP_000525111.1|2628901_2630785_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000983676.1|2630796_2632578_+	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_031928159.1|2632798_2633776_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000606781.1|2633768_2635283_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000663021.1|2635522_2636581_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|2636738_2637287_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|2637974_2638892_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|2638982_2639084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|2639161_2640667_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|2641007_2641508_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|2641527_2642394_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2643195_2643594_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2643556_2645662_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562500.1|2645779_2646751_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|2647125_2648097_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|2648083_2649040_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|2649036_2649798_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 212
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2659082	2664796	2720524		Streptococcus_phage(66.67%)	5	NA	NA
WP_000460988.1|2659082_2660153_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
WP_160176641.1|2660470_2661526_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000192949.1|2661697_2662339_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000686346.1|2662482_2663349_+	DegV family protein	NA	NA	NA	NA	NA
WP_001622509.1|2663713_2664796_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	3.4e-44
>prophage 213
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2670877	2671717	2720524		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_031928157.1|2670877_2671717_+	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 214
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2675035	2677864	2720524		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_160176642.1|2675035_2677864_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.6	0.0e+00
>prophage 215
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2682026	2687898	2720524		Streptococcus_phage(40.0%)	5	NA	NA
WP_000134963.1|2682026_2682962_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
WP_000369722.1|2683789_2684701_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_001248939.1|2684697_2685693_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000006551.1|2685803_2686748_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001049165.1|2687310_2687898_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
>prophage 216
NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2720524	2698885	2720054	2720524	coat,integrase,transposase	Staphylococcus_phage(79.17%)	30	2690607:2690622	2711304:2711319
2690607:2690622	attL	GGTAAAGTTTTATAAA	NA	NA	NA	NA
WP_001121760.1|2698885_2700190_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
WP_000785252.1|2700528_2700987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|2701053_2701287_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165966.1|2701415_2702156_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001050026.1|2702189_2704562_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
WP_001085185.1|2704583_2705048_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000149511.1|2705610_2706717_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|2706706_2707510_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_001045296.1|2707645_2707849_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|2707884_2708103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784885.1|2708114_2708261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058494.1|2708253_2708463_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_001103939.1|2708465_2708783_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_001002717.1|2708846_2709716_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.8	8.7e-160
WP_000390453.1|2709732_2711190_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
WP_001039170.1|2711490_2711853_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
2711304:2711319	attR	GGTAAAGTTTTATAAA	NA	NA	NA	NA
WP_000998185.1|2711854_2712139_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
WP_001019808.1|2712135_2712777_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.9e-111
WP_001288441.1|2713484_2713829_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_000856046.1|2713863_2714442_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
WP_000777464.1|2714670_2715198_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
WP_045181470.1|2715329_2715542_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_098686295.1|2716081_2717210_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_001282074.1|2717901_2718147_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2718143_2718350_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2718346_2718733_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2718729_2718879_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|2718878_2719079_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|2719106_2719523_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2719754_2720054_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
