assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912875.1_ASM991287v1	NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	1	1388257-1388395	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	1388308-1388344	NZ_CP047845.1_1388219-1388255	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|93aa|up_7|NZ_CP047845.1_1380306_1380585_+,NA|67aa|up_1|NZ_CP047845.1_1386941_1387142_+,NA|61aa|up_0|NZ_CP047845.1_1387123_1387306_-,NA	NA|807aa|up_9|NZ_CP047845.1_1375958_1378379_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_CP047845.1_1378577_1379432_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP047845.1_1380306_1380585_+	NA	NA|506aa|up_6|NZ_CP047845.1_1380594_1382112_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP047845.1_1382336_1383152_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP047845.1_1383446_1383872_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP047845.1_1384247_1384952_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP047845.1_1384988_1386653_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|NZ_CP047845.1_1386941_1387142_+	NA	NA|61aa|up_0|NZ_CP047845.1_1387123_1387306_-	NA	NA|133aa|down_0|NZ_CP047845.1_1390171_1390570_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP047845.1_1390583_1391021_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP047845.1_1391260_1392064_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP047845.1_1392068_1392875_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP047845.1_1392864_1393725_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP047845.1_1393721_1394531_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP047845.1_1395068_1395437_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP047845.1_1395453_1396398_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP047845.1_1396472_1396862_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP047845.1_1396885_1397251_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_009912875.1_ASM991287v1	NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	2	1426818-1426910	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	ACATTATTGTAAGCTGACTTTTCGTCACCTTCT	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|55aa|up_9|NZ_CP047845.1_1417319_1417484_+,NA|106aa|up_8|NZ_CP047845.1_1417728_1418046_+,NA|84aa|up_5|NZ_CP047845.1_1423167_1423419_+,NA|57aa|up_0|NZ_CP047845.1_1426560_1426731_+,NA	NA|55aa|up_9|NZ_CP047845.1_1417319_1417484_+	NA	NA|106aa|up_8|NZ_CP047845.1_1417728_1418046_+	NA	NA|1056aa|up_7|NZ_CP047845.1_1418229_1421397_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047845.1_1421513_1422779_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047845.1_1423167_1423419_+	NA	NA|255aa|up_4|NZ_CP047845.1_1423410_1424175_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047845.1_1424338_1424779_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047845.1_1424771_1425983_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047845.1_1426084_1426435_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047845.1_1426560_1426731_+	NA	NA|341aa|down_0|NZ_CP047845.1_1427075_1428098_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047845.1_1428117_1428717_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047845.1_1428723_1428957_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047845.1_1428962_1429409_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047845.1_1429422_1429908_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047845.1_1429904_1431164_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047845.1_1431226_1431721_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047845.1_1431722_1432229_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047845.1_1432258_1433263_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047845.1_1433430_1434036_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009912875.1_ASM991287v1	NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	3	1579220-1579313	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_2|NZ_CP047845.1_1576941_1577046_+,NA|35aa|down_0|NZ_CP047845.1_1579507_1579612_-	NA|200aa|up_9|NZ_CP047845.1_1570418_1571018_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP047845.1_1571036_1571399_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP047845.1_1571653_1572904_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP047845.1_1573000_1573732_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP047845.1_1573728_1574448_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP047845.1_1574428_1575208_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP047845.1_1575328_1576768_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP047845.1_1576941_1577046_+	NA	NA|229aa|up_1|NZ_CP047845.1_1577199_1577886_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP047845.1_1578212_1579079_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP047845.1_1579507_1579612_-	NA	NA|438aa|down_1|NZ_CP047845.1_1579706_1581020_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP047845.1_1581555_1582485_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP047845.1_1583052_1584000_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP047845.1_1584001_1584979_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP047845.1_1585037_1585505_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP047845.1_1585515_1586208_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP047845.1_1586218_1587334_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP047845.1_1587311_1588319_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP047845.1_1588320_1589679_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_009912875.1_ASM991287v1	NZ_CP047845	Staphylococcus aureus strain UP_591 chromosome, complete genome	4	2683458-2683541	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	GTAAGCTGACTTTACGTTAGCTTCT	25	1	1	2683483-2683516	NZ_CP047845.1_943146-943113	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|370aa|up_9|NZ_CP047845.1_2669356_2670467_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_8|NZ_CP047845.1_2670877_2671717_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_7|NZ_CP047845.1_2671890_2672541_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_6|NZ_CP047845.1_2672537_2672774_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_5|NZ_CP047845.1_2673042_2675028_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|943aa|up_4|NZ_CP047845.1_2675035_2677864_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_3|NZ_CP047845.1_2678240_2679173_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_2|NZ_CP047845.1_2679178_2680018_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|480aa|up_1|NZ_CP047845.1_2680520_2681960_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP047845.1_2682026_2682962_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP047845.1_2683789_2684701_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP047845.1_2684697_2685693_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP047845.1_2685803_2686748_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP047845.1_2687310_2687898_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP047845.1_2688079_2689714_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP047845.1_2690104_2691007_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP047845.1_2691709_2692339_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP047845.1_2692947_2693961_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP047845.1_2694013_2695024_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP047845.1_2695162_2696353_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
