assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	1	239344-239425	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGACTATTGGCCAGCTTGTGTGTTGGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|134aa|up_9|NZ_CP047797.1_221321_221723_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|188aa|up_8|NZ_CP047797.1_221842_222406_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_7|NZ_CP047797.1_222402_223356_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_6|NZ_CP047797.1_223465_224647_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|up_5|NZ_CP047797.1_224937_227352_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_4|NZ_CP047797.1_227373_227685_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|423aa|up_3|NZ_CP047797.1_234666_235935_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP047797.1_236341_238003_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP047797.1_237999_238695_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP047797.1_238711_239134_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP047797.1_239687_241097_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP047797.1_241100_241949_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP047797.1_242499_243291_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP047797.1_243305_243950_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|440aa|down_4|NZ_CP047797.1_244068_245388_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|523aa|down_5|NZ_CP047797.1_245636_247204_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|281aa|down_6|NZ_CP047797.1_247603_248446_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_7|NZ_CP047797.1_248570_248882_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_8|NZ_CP047797.1_248968_250045_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|98aa|down_9|NZ_CP047797.1_250109_250403_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	2	299841-299923	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCACCCCAACTTGCA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|257aa|up_9|NZ_CP047797.1_289531_290302_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_8|NZ_CP047797.1_290399_290894_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_7|NZ_CP047797.1_291016_291964_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_6|NZ_CP047797.1_292051_293254_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_5|NZ_CP047797.1_293499_294000_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_4|NZ_CP047797.1_294140_295259_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_3|NZ_CP047797.1_295573_296629_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP047797.1_296803_297493_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP047797.1_297880_298294_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP047797.1_298498_299797_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP047797.1_300199_301141_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP047797.1_301161_304359_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP047797.1_304810_306040_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP047797.1_306234_307092_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP047797.1_307091_308036_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP047797.1_308304_309273_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP047797.1_309294_311052_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP047797.1_311401_312763_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP047797.1_313110_314232_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP047797.1_314280_315549_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	3	1268457-1269668	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGANTCNGANTCNCTNTCNGAATCNGANTCNNNNNN	36	4	87	1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269225-1269242|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269273-1269296|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269327-1269350|1269381-1269404|1269381-1269404|1269381-1269404|1269381-1269404	NZ_CP047797.1_1509391-1509408|NZ_CP047797.1_1509481-1509498|NZ_CP047797.1_1513645-1513662|NZ_CP047797.1_2163146-2163129|NZ_CP047797.1_2163236-2163219|NZ_CP047797.1_2163308-2163291|NZ_CP047797.1_2163794-2163777|NZ_CP047797.1_1505374-1505391|NZ_CP047797.1_1505482-1505499|NZ_CP047797.1_1505662-1505679|NZ_CP047797.1_1509139-1509156|NZ_CP047797.1_1509175-1509192|NZ_CP047797.1_1513447-1513464|NZ_CP047797.1_1513699-1513716|NZ_CP047797.1_1513735-1513752|NZ_CP047797.1_1513969-1513986|NZ_CP047797.1_2163200-2163183|NZ_CP047797.1_2163290-2163273|NZ_CP047797.1_2163362-2163345|NZ_CP047797.1_2163380-2163363|NZ_CP047797.1_2163398-2163381|NZ_CP047797.1_2163506-2163489|NZ_CP047797.1_2163560-2163543|NZ_CP047797.1_2163650-2163633|NZ_CP047797.1_2163758-2163741|NZ_CP047797.1_2163776-2163759|NZ_CP047797.1_2163872-2163855|NZ_CP047797.1_2163548-2163525|NZ_CP047797.1_2163692-2163669|NZ_CP047797.1_2163860-2163837|NZ_CP047797.1_1505242-1505265|NZ_CP047797.1_1505296-1505319|NZ_CP047797.1_1505350-1505373|NZ_CP047797.1_1505440-1505463|NZ_CP047797.1_1505512-1505535|NZ_CP047797.1_1505602-1505625|NZ_CP047797.1_1509277-1509300|NZ_CP047797.1_1513513-1513536|NZ_CP047797.1_1513585-1513608|NZ_CP047797.1_2163476-2163453|NZ_CP047797.1_2163620-2163597|NZ_CP047797.1_1505386-1505409|NZ_CP047797.1_1505566-1505589|NZ_CP047797.1_1509151-1509174|NZ_CP047797.1_1509331-1509354|NZ_CP047797.1_1509403-1509426|NZ_CP047797.1_1509493-1509516|NZ_CP047797.1_1513657-1513680|NZ_CP047797.1_1513765-1513788|NZ_CP047797.1_1513801-1513824|NZ_CP047797.1_1509457-1509480|NZ_CP047797.1_1513783-1513806|NZ_CP047797.1_1513819-1513842|NZ_CP047797.1_1505368-1505391|NZ_CP047797.1_1505476-1505499|NZ_CP047797.1_1505530-1505553|NZ_CP047797.1_1505584-1505607|NZ_CP047797.1_1505692-1505715|NZ_CP047797.1_1509169-1509192|NZ_CP047797.1_1509223-1509246|NZ_CP047797.1_1509313-1509336|NZ_CP047797.1_1509421-1509444|NZ_CP047797.1_1513441-1513464|NZ_CP047797.1_1513621-1513644|NZ_CP047797.1_2163530-2163507|NZ_CP047797.1_2163674-2163651|NZ_CP047797.1_1505260-1505283|NZ_CP047797.1_1505314-1505337|NZ_CP047797.1_1505404-1505427|NZ_CP047797.1_1505620-1505643|NZ_CP047797.1_1509511-1509534|NZ_CP047797.1_1513675-1513698|NZ_CP047797.1_1513693-1513716|NZ_CP047797.1_1513729-1513752|NZ_CP047797.1_1513873-1513896|NZ_CP047797.1_1513927-1513950|NZ_CP047797.1_2163152-2163129|NZ_CP047797.1_2163242-2163219|NZ_CP047797.1_2163314-2163291|NZ_CP047797.1_2163512-2163489|NZ_CP047797.1_2163566-2163543|NZ_CP047797.1_2163656-2163633|NZ_CP047797.1_2163800-2163777|NZ_CP047797.1_2163878-2163855|NZ_CP047797.1_1509241-1509264|NZ_CP047797.1_1513837-1513860|NZ_CP047797.1_1513891-1513914	NA	17	17	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|87aa|up_9|NZ_CP047797.1_1260344_1260605_+,NA|63aa|up_8|NZ_CP047797.1_1260633_1260822_+,NA|95aa|up_6|NZ_CP047797.1_1261666_1261951_+,NA|73aa|up_5|NZ_CP047797.1_1262012_1262231_+,NA|161aa|up_2|NZ_CP047797.1_1264311_1264794_-,NA|340aa|up_1|NZ_CP047797.1_1265130_1266150_-,NA|174aa|down_1|NZ_CP047797.1_1272294_1272816_-,NA|153aa|down_7|NZ_CP047797.1_1279124_1279583_-	NA|87aa|up_9|NZ_CP047797.1_1260344_1260605_+	NA	NA|63aa|up_8|NZ_CP047797.1_1260633_1260822_+	NA	NA|190aa|up_7|NZ_CP047797.1_1261009_1261579_+	COG3863, COG3863, Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]	NA|95aa|up_6|NZ_CP047797.1_1261666_1261951_+	NA	NA|73aa|up_5|NZ_CP047797.1_1262012_1262231_+	NA	NA|67aa|up_4|NZ_CP047797.1_1262727_1262928_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|229aa|up_3|NZ_CP047797.1_1263284_1263971_-	pfam00565, SNase, Staphylococcal nuclease homolog	NA|161aa|up_2|NZ_CP047797.1_1264311_1264794_-	NA	NA|340aa|up_1|NZ_CP047797.1_1265130_1266150_-	NA	NA|509aa|up_0|NZ_CP047797.1_1266502_1268029_-	pfam08764, Coagulase, Staphylococcus aureus coagulase	NA|177aa|down_0|NZ_CP047797.1_1271625_1272156_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|174aa|down_1|NZ_CP047797.1_1272294_1272816_-	NA	NA|242aa|down_2|NZ_CP047797.1_1273413_1274139_+	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|155aa|down_3|NZ_CP047797.1_1275063_1275528_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|791aa|down_4|NZ_CP047797.1_1275549_1277922_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|down_5|NZ_CP047797.1_1277955_1278696_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_6|NZ_CP047797.1_1278824_1279058_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|down_7|NZ_CP047797.1_1279124_1279583_-	NA	NA|435aa|down_8|NZ_CP047797.1_1279922_1281227_-	PRK00077, eno, enolase; Provisional	NA|506aa|down_9|NZ_CP047797.1_1281356_1282874_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	4	1583999-1584088	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	CAGCTTCTATGTTGGGGCCCACACCCCAACT	31	1	3	1584030-1584057|1584030-1584057|1584030-1584057	NZ_CP047797.1_89065-89038|NZ_CP047797.1_1296693-1296666|NZ_CP047797.1_1468597-1468624	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_5|NZ_CP047797.1_1579351_1579444_-,NA	NA|187aa|up_9|NZ_CP047797.1_1562324_1562885_-	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|296aa|up_8|NZ_CP047797.1_1562888_1563776_-	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|461aa|up_7|NZ_CP047797.1_1563879_1565262_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|496aa|up_6|NZ_CP047797.1_1577811_1579299_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|31aa|up_5|NZ_CP047797.1_1579351_1579444_-	NA	NA|159aa|up_4|NZ_CP047797.1_1579837_1580314_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|122aa|up_3|NZ_CP047797.1_1580310_1580676_-	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|268aa|up_2|NZ_CP047797.1_1580653_1581457_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|311aa|up_1|NZ_CP047797.1_1581672_1582605_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|294aa|up_0|NZ_CP047797.1_1582783_1583665_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|698aa|down_0|NZ_CP047797.1_1584310_1586404_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|180aa|down_1|NZ_CP047797.1_1586661_1587201_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|432aa|down_2|NZ_CP047797.1_1587205_1588501_-	pfam01171, ATP_bind_3, PP-loop family	NA|134aa|down_3|NZ_CP047797.1_1588680_1589082_-	PRK08582, PRK08582, RNA-binding protein S1	NA|131aa|down_4|NZ_CP047797.1_1589186_1589579_-	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|88aa|down_5|NZ_CP047797.1_1589596_1589860_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|398aa|down_6|NZ_CP047797.1_1589856_1591050_-	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|509aa|down_7|NZ_CP047797.1_1591049_1592576_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	cas3|1169aa|down_8|NZ_CP047797.1_1592565_1596072_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|191aa|down_9|NZ_CP047797.1_1596071_1596644_-	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	5	1828413-1828493	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AAGTTGGGGTGTGGGCCTCAACA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|49aa|down_4|NZ_CP047797.1_1833772_1833919_-	NA|234aa|up_9|NZ_CP047797.1_1816545_1817247_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|up_8|NZ_CP047797.1_1817239_1817683_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|up_7|NZ_CP047797.1_1817795_1818536_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|up_6|NZ_CP047797.1_1818538_1820278_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|up_5|NZ_CP047797.1_1820538_1821213_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|up_4|NZ_CP047797.1_1821356_1823078_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|up_3|NZ_CP047797.1_1823110_1824799_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|up_2|NZ_CP047797.1_1824820_1825846_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|up_1|NZ_CP047797.1_1825838_1826555_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|390aa|up_0|NZ_CP047797.1_1826830_1828000_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|565aa|down_0|NZ_CP047797.1_1828727_1830422_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|down_1|NZ_CP047797.1_1830443_1831469_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|down_2|NZ_CP047797.1_1831461_1832178_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|348aa|down_3|NZ_CP047797.1_1832705_1833749_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|49aa|down_4|NZ_CP047797.1_1833772_1833919_-	NA	NA|352aa|down_5|NZ_CP047797.1_1833920_1834976_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|420aa|down_6|NZ_CP047797.1_1834993_1836253_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|93aa|down_7|NZ_CP047797.1_1836479_1836758_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|156aa|down_8|NZ_CP047797.1_1836780_1837248_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|699aa|down_9|NZ_CP047797.1_1837232_1839329_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	6	2105698-2105776	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTGGCGGGGCCCCAACAAAGAGAA	24	1	17	2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752|2105722-2105752	NZ_CP047797.1_1468683-1468653|NZ_CP047797.1_421587-421617|NZ_CP047797.1_1041175-1041205|NZ_CP047797.1_2071507-2071537|NZ_CP047797.1_1468741-1468711|NZ_CP047797.1_89092-89122|NZ_CP047797.1_387508-387538|NZ_CP047797.1_1014573-1014603|NZ_CP047797.1_1139085-1139115|NZ_CP047797.1_1296550-1296580|NZ_CP047797.1_1828385-1828415|NZ_CP047797.1_297667-297637|NZ_CP047797.1_1248120-1248090|NZ_CP047797.1_1583886-1583856|NZ_CP047797.1_1583944-1583914|NZ_CP047797.1_1735686-1735656|NZ_CP047797.1_1287566-1287596	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|71aa|up_1|NZ_CP047797.1_2102572_2102785_+,NA	NA|205aa|up_9|NZ_CP047797.1_2095942_2096557_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP047797.1_2096549_2097800_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP047797.1_2097815_2098829_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP047797.1_2098797_2099376_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP047797.1_2099372_2099951_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP047797.1_2099943_2100648_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP047797.1_2100644_2101403_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP047797.1_2101399_2102032_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|71aa|up_1|NZ_CP047797.1_2102572_2102785_+	NA	NA|681aa|up_0|NZ_CP047797.1_2103557_2105600_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP047797.1_2105990_2107043_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP047797.1_2107029_2107902_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP047797.1_2107898_2108204_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP047797.1_2108167_2109406_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP047797.1_2109569_2110130_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP047797.1_2110977_2111640_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP047797.1_2111656_2112349_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP047797.1_2112345_2113113_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP047797.1_2113347_2113848_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP047797.1_2113850_2114327_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	7	2378127-2378205	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|36aa|up_0|NZ_CP047797.1_2377699_2377807_+,NA|56aa|down_2|NZ_CP047797.1_2382262_2382430_+	NA|693aa|up_9|NZ_CP047797.1_2367518_2369597_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047797.1_2369734_2371144_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047797.1_2371429_2372236_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047797.1_2372298_2372955_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047797.1_2373067_2373541_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047797.1_2373663_2374875_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|218aa|up_3|NZ_CP047797.1_2375056_2375710_-	PHA02562, 46, endonuclease subunit; Provisional	NA|381aa|up_2|NZ_CP047797.1_2375769_2376912_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047797.1_2377179_2377566_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047797.1_2377699_2377807_+	NA	NA|588aa|down_0|NZ_CP047797.1_2378510_2380274_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047797.1_2380298_2382032_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP047797.1_2382262_2382430_+	NA	NA|229aa|down_3|NZ_CP047797.1_2382484_2383171_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP047797.1_2383148_2384507_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP047797.1_2384508_2385516_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP047797.1_2385493_2386609_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP047797.1_2386619_2387312_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP047797.1_2387322_2387790_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP047797.1_2387841_2388819_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	8	2393477-2393568	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCGCAGAAAATAAAGGAACGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|40aa|up_0|NZ_CP047797.1_2393160_2393280_+,NA|35aa|down_2|NZ_CP047797.1_2395795_2395900_-	NA|453aa|up_9|NZ_CP047797.1_2383148_2384507_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047797.1_2384508_2385516_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047797.1_2385493_2386609_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047797.1_2386619_2387312_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047797.1_2387322_2387790_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047797.1_2387841_2388819_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047797.1_2388820_2389768_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047797.1_2390336_2391266_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_CP047797.1_2391755_2393066_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|40aa|up_0|NZ_CP047797.1_2393160_2393280_+	NA	NA|289aa|down_0|NZ_CP047797.1_2393762_2394629_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047797.1_2394955_2395642_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047797.1_2395795_2395900_-	NA	NA|480aa|down_3|NZ_CP047797.1_2396073_2397513_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047797.1_2397633_2398413_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047797.1_2398393_2399113_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047797.1_2399109_2399841_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047797.1_2399937_2401188_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047797.1_2401442_2401805_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047797.1_2401823_2402423_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	9	2542116-2542204	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAGCTTACAATAATGTGCAAGTTGGGGAAC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047797.1_2542218_2542389_-,NA|84aa|down_5|NZ_CP047797.1_2545529_2545781_-,NA|106aa|down_8|NZ_CP047797.1_2550905_2551223_-,NA|55aa|down_9|NZ_CP047797.1_2551457_2551622_-	NA|202aa|up_9|NZ_CP047797.1_2534971_2535577_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047797.1_2535744_2536749_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047797.1_2536779_2537286_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047797.1_2537287_2537782_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047797.1_2537844_2539104_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047797.1_2539100_2539586_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047797.1_2539599_2540046_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047797.1_2540051_2540285_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047797.1_2540291_2540891_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047797.1_2540910_2541933_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047797.1_2542218_2542389_-	NA	NA|117aa|down_1|NZ_CP047797.1_2542514_2542865_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047797.1_2542966_2544178_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047797.1_2544170_2544611_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047797.1_2544773_2545538_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047797.1_2545529_2545781_-	NA	NA|422aa|down_6|NZ_CP047797.1_2546169_2547435_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047797.1_2547551_2550719_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047797.1_2550905_2551223_-	NA	NA|55aa|down_9|NZ_CP047797.1_2551457_2551622_-	NA
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	10	2659485-2659570	9	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047797.1_2658976_2659081_+,NA|364aa|down_0|NZ_CP047797.1_2659587_2660679_-,NA|77aa|down_5|NZ_CP047797.1_2664467_2664698_+	NA|2478aa|up_9|NZ_CP047797.1_2638658_2646092_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047797.1_2646410_2647517_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047797.1_2647516_2647951_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047797.1_2647962_2650095_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047797.1_2650129_2651668_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047797.1_2652348_2654154_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047797.1_2654385_2655168_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047797.1_2655235_2656093_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|376aa|up_1|NZ_CP047797.1_2657141_2658269_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047797.1_2658976_2659081_+	NA	NA|364aa|down_0|NZ_CP047797.1_2659587_2660679_-	NA	NA|327aa|down_1|NZ_CP047797.1_2660944_2661925_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047797.1_2661926_2662247_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047797.1_2662398_2663064_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047797.1_2663498_2664437_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047797.1_2664467_2664698_+	NA	NA|458aa|down_6|NZ_CP047797.1_2665371_2666745_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047797.1_2667202_2667616_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047797.1_2667815_2668259_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047797.1_2668379_2669090_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	11	2762704-2762889	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCC	16	2	4	2762778-2762819|2762778-2762819|2762778-2762819|2762836-2762875	NZ_CP047797.1_1252272-1252231|NZ_CP047797.1_1252329-1252288|NZ_CP047797.1_1924463-1924422|NZ_CP047797.1_1583964-1584003	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|52aa|up_4|NZ_CP047797.1_2759812_2759968_-,NA|43aa|down_1|NZ_CP047797.1_2764693_2764822_+	NA|510aa|up_9|NZ_CP047797.1_2753055_2754585_-	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|340aa|up_8|NZ_CP047797.1_2754614_2755634_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|85aa|up_7|NZ_CP047797.1_2755755_2756010_-	PRK13562, PRK13562, ACT domain-containing protein	NA|590aa|up_6|NZ_CP047797.1_2756009_2757779_-	PRK07710, PRK07710, acetolactate synthase large subunit	NA|563aa|up_5|NZ_CP047797.1_2757806_2759495_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|52aa|up_4|NZ_CP047797.1_2759812_2759968_-	NA	NA|145aa|up_3|NZ_CP047797.1_2760032_2760467_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|221aa|up_2|NZ_CP047797.1_2760447_2761110_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|155aa|up_1|NZ_CP047797.1_2761082_2761547_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|342aa|up_0|NZ_CP047797.1_2761539_2762565_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|537aa|down_0|NZ_CP047797.1_2762994_2764605_-	COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	NA|43aa|down_1|NZ_CP047797.1_2764693_2764822_+	NA	NA|643aa|down_2|NZ_CP047797.1_2764966_2766895_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|212aa|down_3|NZ_CP047797.1_2767147_2767783_+	COG2344, COG2344, AT-rich DNA-binding protein [General function prediction only]	NA|343aa|down_4|NZ_CP047797.1_2768138_2769167_+	pfam04143, Sulf_transp, Sulphur transport	NA|75aa|down_5|NZ_CP047797.1_2769226_2769451_+	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_6|NZ_CP047797.1_2769660_2770911_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|317aa|down_7|NZ_CP047797.1_2771091_2772042_+	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|495aa|down_8|NZ_CP047797.1_2772190_2773675_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|320aa|down_9|NZ_CP047797.1_2773671_2774631_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate
GCF_009912955.1_ASM991295v1	NZ_CP047797	Staphylococcus aureus strain UP_426 chromosome, complete genome	12	2816112-2816191	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	ACAATGCAAGTTGGGGTGGGGCC	23	1	8	2816135-2816168|2816135-2816168|2816135-2816168|2816135-2816168|2816135-2816168|2816135-2816168|2816135-2816168|2816135-2816168	NZ_CP047797.1_1252164-1252197|NZ_CP047797.1_1296537-1296570|NZ_CP047797.1_942505-942472|NZ_CP047797.1_1342682-1342649|NZ_CP047797.1_1735589-1735556|NZ_CP047797.1_1735644-1735611|NZ_CP047797.1_1248030-1247997|NZ_CP047797.1_686877-686910	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|101aa|up_7|NZ_CP047797.1_2808107_2808410_-,NA|95aa|up_5|NZ_CP047797.1_2808894_2809179_-,NA|314aa|up_4|NZ_CP047797.1_2809293_2810235_+,NA|60aa|up_2|NZ_CP047797.1_2813289_2813469_+,NA|209aa|up_1|NZ_CP047797.1_2813465_2814092_+,NA|205aa|down_6|NZ_CP047797.1_2825465_2826080_+,NA|49aa|down_7|NZ_CP047797.1_2826076_2826223_-,NA|61aa|down_8|NZ_CP047797.1_2826258_2826441_-	NA|352aa|up_9|NZ_CP047797.1_2805725_2806781_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|364aa|up_8|NZ_CP047797.1_2806841_2807933_-	pfam02486, Rep_trans, Replication initiation factor	NA|101aa|up_7|NZ_CP047797.1_2808107_2808410_-	NA	NA|107aa|up_6|NZ_CP047797.1_2808423_2808744_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|95aa|up_5|NZ_CP047797.1_2808894_2809179_-	NA	NA|314aa|up_4|NZ_CP047797.1_2809293_2810235_+	NA	NA|184aa|up_3|NZ_CP047797.1_2811079_2811631_-	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|60aa|up_2|NZ_CP047797.1_2813289_2813469_+	NA	NA|209aa|up_1|NZ_CP047797.1_2813465_2814092_+	NA	NA|436aa|up_0|NZ_CP047797.1_2814663_2815971_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|401aa|down_0|NZ_CP047797.1_2816602_2817805_+	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated	NA|290aa|down_1|NZ_CP047797.1_2817807_2818677_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|408aa|down_2|NZ_CP047797.1_2819174_2820398_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_3|NZ_CP047797.1_2820833_2821889_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_4|NZ_CP047797.1_2821910_2822927_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_5|NZ_CP047797.1_2824320_2825358_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|205aa|down_6|NZ_CP047797.1_2825465_2826080_+	NA	NA|49aa|down_7|NZ_CP047797.1_2826076_2826223_-	NA	NA|61aa|down_8|NZ_CP047797.1_2826258_2826441_-	NA	NA|62aa|down_9|NZ_CP047797.1_2826511_2826697_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase
