assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	1	410980-411064	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	411006-411038|411006-411038	NZ_CP047867.1_681013-680981|NZ_CP047867.1_1243917-1243949	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047867.1_401609_402179_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047867.1_402168_402753_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047867.1_402753_403107_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047867.1_403109_403826_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047867.1_403865_404552_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047867.1_404643_405105_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047867.1_405163_407311_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047867.1_407367_408342_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047867.1_408386_408638_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047867.1_408983_410807_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047867.1_411373_412498_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047867.1_412598_413576_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047867.1_413607_414234_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047867.1_414302_416135_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047867.1_416270_417410_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047867.1_417413_418352_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047867.1_418353_419106_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047867.1_419112_420459_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047867.1_420751_420928_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047867.1_421171_421855_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	2	1200670-1200751	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1200694-1200727	NZ_CP047867.1_681014-680981	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047867.1_1201734_1201848_-	NA|414aa|up_9|NZ_CP047867.1_1191097_1192339_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047867.1_1192453_1193761_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047867.1_1193858_1194620_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047867.1_1194947_1195799_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047867.1_1196032_1196227_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047867.1_1196580_1197402_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047867.1_1197419_1198115_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047867.1_1198107_1199133_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047867.1_1199382_1199679_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047867.1_1199671_1200058_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047867.1_1200854_1201733_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047867.1_1201734_1201848_-	NA	NA|127aa|down_2|NZ_CP047867.1_1201911_1202292_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047867.1_1202449_1202806_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047867.1_1202949_1203270_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047867.1_1203420_1203960_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047867.1_1204042_1204759_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047867.1_1204906_1205329_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047867.1_1205727_1206222_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047867.1_1206376_1206994_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	3	1249429-1249507	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1249453-1249483|1249453-1249483|1249453-1249483	NZ_CP047867.1_1760929-1760899|NZ_CP047867.1_376552-376582|NZ_CP047867.1_1760984-1760954	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047867.1_1256985_1257093_-,NA|35aa|down_7|NZ_CP047867.1_1258525_1258630_-	NA|301aa|up_9|NZ_CP047867.1_1238310_1239213_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047867.1_1239455_1240043_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047867.1_1240606_1241551_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047867.1_1241661_1242657_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047867.1_1242653_1243565_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047867.1_1244450_1245386_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047867.1_1245452_1246892_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047867.1_1246899_1247385_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047867.1_1247392_1248232_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047867.1_1248237_1249170_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047867.1_1249833_1252680_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047867.1_1252687_1254673_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047867.1_1254941_1255178_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047867.1_1255174_1255825_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047867.1_1255998_1256838_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047867.1_1256985_1257093_-	NA	NA|370aa|down_6|NZ_CP047867.1_1257246_1258357_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047867.1_1258525_1258630_-	NA	NA|844aa|down_8|NZ_CP047867.1_1258671_1261203_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047867.1_1261616_1262189_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	4	1645755-1645857	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047867.1_1637373_1637910_+,NA|221aa|up_1|NZ_CP047867.1_1644001_1644664_+,NA|33aa|down_0|NZ_CP047867.1_1646532_1646631_-,NA|128aa|down_6|NZ_CP047867.1_1652878_1653262_+,NA|70aa|down_8|NZ_CP047867.1_1654086_1654296_+	NA|91aa|up_9|NZ_CP047867.1_1635606_1635879_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047867.1_1636277_1636982_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047867.1_1637373_1637910_+	NA	NA|514aa|up_6|NZ_CP047867.1_1638022_1639564_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047867.1_1639588_1641055_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047867.1_1641092_1642361_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047867.1_1642360_1642939_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047867.1_1643451_1643859_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047867.1_1644001_1644664_+	NA	NA|319aa|up_0|NZ_CP047867.1_1644781_1645738_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047867.1_1646532_1646631_-	NA	NA|463aa|down_1|NZ_CP047867.1_1646715_1648104_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047867.1_1648183_1648939_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047867.1_1649430_1650000_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047867.1_1650015_1651539_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047867.1_1651982_1652609_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047867.1_1652878_1653262_+	NA	NA|194aa|down_7|NZ_CP047867.1_1653327_1653909_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047867.1_1654086_1654296_+	NA	NA|84aa|down_9|NZ_CP047867.1_1654334_1654586_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	5	2305219-2305352	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2305236-2305281|2305299-2305335	NZ_CP047867.1_2301712-2301757|NZ_CP047867.1_2301775-2301811	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047867.1_2298888_2299089_+,NA|78aa|down_5|NZ_CP047867.1_2313669_2313903_+,NA|103aa|down_6|NZ_CP047867.1_2314010_2314319_-,NA|89aa|down_7|NZ_CP047867.1_2314462_2314729_-	NA|426aa|up_9|NZ_CP047867.1_2288885_2290163_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047867.1_2290639_2292463_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047867.1_2292601_2293018_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047867.1_2293248_2293941_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047867.1_2294105_2294870_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047867.1_2295022_2295703_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047867.1_2295726_2297280_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047867.1_2297396_2298755_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047867.1_2298888_2299089_+	NA	NA|997aa|up_0|NZ_CP047867.1_2299223_2302214_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047867.1_2305960_2306827_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047867.1_2307037_2307781_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047867.1_2308104_2308461_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_3|NZ_CP047867.1_2308765_2312113_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP047867.1_2312496_2313573_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP047867.1_2313669_2313903_+	NA	NA|103aa|down_6|NZ_CP047867.1_2314010_2314319_-	NA	NA|89aa|down_7|NZ_CP047867.1_2314462_2314729_-	NA	NA|603aa|down_8|NZ_CP047867.1_2315012_2316821_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP047867.1_2316952_2317345_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6	2380766-2380844	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	2380789-2380821|2380789-2380821|2380789-2380821|2380789-2380821|2380789-2380821	NZ_CP047867.1_1200381-1200413|NZ_CP047867.1_1236618-1236650|NZ_CP047867.1_2775742-2775710|NZ_CP047867.1_1236674-1236706|NZ_CP047867.1_1236730-1236762	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047867.1_2377690_2378350_-,NA|36aa|up_0|NZ_CP047867.1_2380339_2380447_+,NA	NA|693aa|up_9|NZ_CP047867.1_2370152_2372231_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047867.1_2372368_2373778_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047867.1_2374063_2374870_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047867.1_2374932_2375589_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047867.1_2375701_2376175_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047867.1_2376297_2377509_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047867.1_2377690_2378350_-	NA	NA|381aa|up_2|NZ_CP047867.1_2378409_2379552_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047867.1_2379819_2380206_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047867.1_2380339_2380447_+	NA	NA|588aa|down_0|NZ_CP047867.1_2381149_2382913_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047867.1_2382937_2384671_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047867.1_2385123_2385810_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047867.1_2385787_2387146_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047867.1_2387147_2388155_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047867.1_2388132_2389248_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047867.1_2389258_2389951_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047867.1_2389961_2390429_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047867.1_2390480_2391458_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047867.1_2391459_2392407_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7	2547073-2547153	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	15	2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128|2547098-2547128	NZ_CP047867.1_1236678-1236708|NZ_CP047867.1_1236734-1236764|NZ_CP047867.1_396400-396370|NZ_CP047867.1_681055-681025|NZ_CP047867.1_887156-887126|NZ_CP047867.1_1417323-1417293|NZ_CP047867.1_1684594-1684564|NZ_CP047867.1_80559-80589|NZ_CP047867.1_592477-592507|NZ_CP047867.1_592593-592623|NZ_CP047867.1_989718-989748|NZ_CP047867.1_1200385-1200415|NZ_CP047867.1_1236622-1236652|NZ_CP047867.1_1982625-1982655|NZ_CP047867.1_2557899-2557929	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047867.1_2547194_2547380_-,NA|84aa|down_5|NZ_CP047867.1_2550519_2550771_-,NA|106aa|down_8|NZ_CP047867.1_2555892_2556210_-,NA|55aa|down_9|NZ_CP047867.1_2556454_2556619_-	NA|202aa|up_9|NZ_CP047867.1_2539965_2540571_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047867.1_2540740_2541745_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047867.1_2541775_2542282_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047867.1_2542283_2542778_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047867.1_2542840_2544100_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047867.1_2544096_2544582_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047867.1_2544595_2545042_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047867.1_2545047_2545281_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047867.1_2545287_2545887_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047867.1_2545906_2546929_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047867.1_2547194_2547380_-	NA	NA|117aa|down_1|NZ_CP047867.1_2547505_2547856_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047867.1_2547957_2549169_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047867.1_2549161_2549602_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047867.1_2549763_2550528_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047867.1_2550519_2550771_-	NA	NA|422aa|down_6|NZ_CP047867.1_2551159_2552425_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047867.1_2552541_2555709_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047867.1_2555892_2556210_-	NA	NA|55aa|down_9|NZ_CP047867.1_2556454_2556619_-	NA
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	8	2658147-2658232	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047867.1_2669194_2669353_-,NA|35aa|down_8|NZ_CP047867.1_2670032_2670137_+,NA|364aa|down_9|NZ_CP047867.1_2670569_2671661_-	NA|228aa|up_9|NZ_CP047867.1_2633077_2633761_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_8|NZ_CP047867.1_2633937_2635281_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_7|NZ_CP047867.1_2635379_2635853_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_6|NZ_CP047867.1_2636175_2637618_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_5|NZ_CP047867.1_2637765_2638830_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|440aa|up_4|NZ_CP047867.1_2645120_2646440_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|303aa|up_3|NZ_CP047867.1_2646590_2647499_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047867.1_2647687_2648497_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047867.1_2648498_2649431_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047867.1_2649457_2650813_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047867.1_2658854_2659961_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047867.1_2659960_2660395_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047867.1_2660406_2662539_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047867.1_2662573_2664112_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047867.1_2664792_2666598_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047867.1_2666829_2667612_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047867.1_2667679_2668537_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047867.1_2669194_2669353_-	NA	NA|35aa|down_8|NZ_CP047867.1_2670032_2670137_+	NA	NA|364aa|down_9|NZ_CP047867.1_2670569_2671661_-	NA
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	9	2670472-2670553	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047867.1_2669194_2669353_-,NA|35aa|up_0|NZ_CP047867.1_2670032_2670137_+,NA|364aa|down_0|NZ_CP047867.1_2670569_2671661_-,NA|77aa|down_5|NZ_CP047867.1_2675447_2675678_+	NA|2482aa|up_9|NZ_CP047867.1_2651090_2658536_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047867.1_2658854_2659961_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047867.1_2659960_2660395_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047867.1_2660406_2662539_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047867.1_2662573_2664112_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047867.1_2664792_2666598_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047867.1_2666829_2667612_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047867.1_2667679_2668537_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047867.1_2669194_2669353_-	NA	NA|35aa|up_0|NZ_CP047867.1_2670032_2670137_+	NA	NA|364aa|down_0|NZ_CP047867.1_2670569_2671661_-	NA	NA|326aa|down_1|NZ_CP047867.1_2671926_2672904_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047867.1_2672905_2673226_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047867.1_2673377_2674043_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047867.1_2674478_2675417_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047867.1_2675447_2675678_+	NA	NA|458aa|down_6|NZ_CP047867.1_2676349_2677723_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047867.1_2678179_2678593_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047867.1_2678792_2679236_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047867.1_2679356_2680067_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009912975.1_ASM991297v1	NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10	2799727-2799808	9	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	2799751-2799784|2799751-2799784|2799751-2799784|2799751-2799784|2799751-2799784	NZ_CP047867.1_892757-892724|NZ_CP047867.1_1249475-1249508|NZ_CP047867.1_284329-284296|NZ_CP047867.1_676607-676640|NZ_CP047867.1_2106930-2106963	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|81aa|down_4|NZ_CP047867.1_2805999_2806242_-,NA|61aa|down_6|NZ_CP047867.1_2807335_2807518_-,NA|114aa|down_7|NZ_CP047867.1_2807721_2808063_-	NA|48aa|up_9|NZ_CP047867.1_2789911_2790055_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP047867.1_2790057_2790621_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP047867.1_2790856_2790991_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP047867.1_2791590_2792376_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP047867.1_2792736_2793363_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP047867.1_2793559_2794819_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP047867.1_2794843_2795587_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP047867.1_2795761_2796046_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP047867.1_2796121_2797738_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP047867.1_2798277_2799585_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP047867.1_2800028_2801252_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP047867.1_2801687_2802743_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP047867.1_2802764_2803781_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP047867.1_2804899_2805937_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_4|NZ_CP047867.1_2805999_2806242_-	NA	NA|328aa|down_5|NZ_CP047867.1_2806252_2807236_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_6|NZ_CP047867.1_2807335_2807518_-	NA	NA|114aa|down_7|NZ_CP047867.1_2807721_2808063_-	NA	DEDDh|311aa|down_8|NZ_CP047867.1_2808068_2809001_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|238aa|down_9|NZ_CP047867.1_2809016_2809730_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
