bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	1.1|411006|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.970	33	1	0	1	33	681013	680981	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.07e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	680981-681013	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	1.1|411006|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.970	33	1	0	1	33	1243917	1243949	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.07e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	1243917-1243949	TGGGCCCCAACACAGAGAAATTGGATTTCCAAT	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	2.1|1200694|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	97.059	34	1	0	1	34	681014	680981	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	4.07e-09	52.3	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT	680981-681014	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	3.1|1249453|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	100.000	31	0	0	1	31	1760929	1760899	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	9.15e-09	50.7	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1760899-1760929	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	0
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	3.1|1249453|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.774	31	1	0	1	31	376552	376582	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	8.23e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	376552-376582	GGCAATGGAAGTTGGCGGGGCCCCAACACAG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	3.1|1249453|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.774	31	1	0	1	31	1760984	1760954	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	8.23e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1760954-1760984	CTGTGTTGGGGCCCCGCCAACTTGCATTACC	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	5.1|2305236|46|NZ_CP047867|PILER-CR	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	95.652	46	2	0	1	46	2301712	2301757	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.55e-13	68.2	1.0	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA	2301712-2301757	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAATAGTGTTGA	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	5.2|2305299|37|NZ_CP047867|PILER-CR	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	94.595	37	2	0	1	37	2301775	2301811	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.69e-09	53.9	1.0	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC	2301775-2301811	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6.1|2380789|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.970	33	1	0	1	33	1200381	1200413	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.07e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1200381-1200413	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6.1|2380789|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.970	33	1	0	1	33	1236618	1236650	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	1.07e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1236618-1236650	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6.1|2380789|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.939	33	2	0	1	33	2775742	2775710	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	9.61e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	2775710-2775742	CATTATTGTAAGCTGACTTTCCGCCAGCCTCTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6.1|2380789|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.939	33	2	0	1	33	1236674	1236706	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	9.61e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1236674-1236706	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	6.1|2380789|33|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.939	33	2	0	1	33	1236730	1236762	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	9.61e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1236730-1236762	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.774	31	1	0	1	31	1236678	1236708	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	8.23e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1236678-1236708	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	96.774	31	1	0	1	31	1236734	1236764	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	8.23e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1236734-1236764	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	396400	396370	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	396370-396400	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	681055	681025	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	681025-681055	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	887156	887126	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	887126-887156	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	1417323	1417293	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1417293-1417323	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	1684594	1684564	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1684564-1684594	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	80559	80589	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	80559-80589	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	592477	592507	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592477-592507	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	592593	592623	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592593-592623	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	989718	989748	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	989718-989748	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	1200385	1200415	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1200385-1200415	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	1236622	1236652	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1236622-1236652	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	1982625	1982655	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1982625-1982655	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	7.1|2547098|31|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	93.548	31	2	0	1	31	2557899	2557929	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	7.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2557899-2557929	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10.1|2799751|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	100.000	34	0	0	1	34	892757	892724	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	4.52e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	892724-892757	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10.1|2799751|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	100.000	34	0	0	1	34	1249475	1249508	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	4.52e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	1249475-1249508	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10.1|2799751|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	97.059	34	1	0	1	34	284329	284296	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	4.07e-09	52.3	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	284296-284329	TTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGG	1
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10.1|2799751|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	94.118	34	2	0	1	34	676607	676640	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	3.66e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	676607-676640	CCAACACAGAGAATTTCGATAAGAAATTCCACAA	2
NZ_CP047867	Staphylococcus aureus strain UP_419 chromosome, complete genome	10.1|2799751|34|NZ_CP047867|CRISPRCasFinder	NZ_CP047867.1	Staphylococcus aureus strain UP_419 chromosome, complete genome	94.118	34	2	0	1	34	2106930	2106963	410980-411064|1200670-1200751|1249429-1249507|1645755-1645857|2305219-2305352|2380766-2380844|2547073-2547153|2658147-2658232|2670472-2670553|2799727-2799808	3.66e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	2106930-2106963	CCAACAAAAAGAATTTCGAAAAGAAATTCTACAA	2
