assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	1	410978-411062	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	411004-411036|411004-411036	NZ_CP047865.1_726844-726812|NZ_CP047865.1_1288868-1288900	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047865.1_401607_402177_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047865.1_402166_402751_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047865.1_402751_403105_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047865.1_403107_403824_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047865.1_403863_404550_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047865.1_404641_405103_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047865.1_405161_407309_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047865.1_407365_408340_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047865.1_408384_408636_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047865.1_408981_410805_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047865.1_411370_412495_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047865.1_412595_413573_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047865.1_413604_414231_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047865.1_414299_416132_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047865.1_416267_417407_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047865.1_417410_418349_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047865.1_418350_419103_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047865.1_419109_420456_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047865.1_420748_420925_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047865.1_421168_421852_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	2	1245695-1245776	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1245719-1245752	NZ_CP047865.1_726845-726812	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047865.1_1246759_1246873_-	NA|414aa|up_9|NZ_CP047865.1_1236122_1237364_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047865.1_1237478_1238786_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047865.1_1238883_1239645_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047865.1_1239972_1240824_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047865.1_1241057_1241252_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047865.1_1241605_1242427_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047865.1_1242444_1243140_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047865.1_1243132_1244158_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047865.1_1244407_1244704_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047865.1_1244696_1245083_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047865.1_1245879_1246758_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047865.1_1246759_1246873_-	NA	NA|127aa|down_2|NZ_CP047865.1_1246936_1247317_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047865.1_1247474_1247831_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047865.1_1247974_1248295_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047865.1_1248445_1248985_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047865.1_1249067_1249784_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047865.1_1249931_1250354_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047865.1_1250752_1251247_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047865.1_1251401_1252019_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	3	1294380-1294458	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1294404-1294434|1294404-1294434|1294404-1294434	NZ_CP047865.1_1805942-1805912|NZ_CP047865.1_376550-376580|NZ_CP047865.1_1805997-1805967	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047865.1_1301936_1302044_-,NA|35aa|down_7|NZ_CP047865.1_1303476_1303581_-	NA|301aa|up_9|NZ_CP047865.1_1283261_1284164_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047865.1_1284406_1284994_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047865.1_1285557_1286502_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047865.1_1286612_1287608_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047865.1_1287604_1288516_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047865.1_1289401_1290337_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047865.1_1290403_1291843_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047865.1_1291850_1292336_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047865.1_1292343_1293183_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047865.1_1293188_1294121_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047865.1_1294784_1297631_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047865.1_1297638_1299624_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047865.1_1299892_1300129_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047865.1_1300125_1300776_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047865.1_1300949_1301789_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047865.1_1301936_1302044_-	NA	NA|370aa|down_6|NZ_CP047865.1_1302197_1303308_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047865.1_1303476_1303581_-	NA	NA|844aa|down_8|NZ_CP047865.1_1303622_1306154_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047865.1_1306567_1307140_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	4	1690768-1690870	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047865.1_1682386_1682923_+,NA|221aa|up_1|NZ_CP047865.1_1689014_1689677_+,NA|33aa|down_0|NZ_CP047865.1_1691545_1691644_-,NA|128aa|down_6|NZ_CP047865.1_1697891_1698275_+,NA|70aa|down_8|NZ_CP047865.1_1699099_1699309_+	NA|91aa|up_9|NZ_CP047865.1_1680619_1680892_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047865.1_1681290_1681995_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047865.1_1682386_1682923_+	NA	NA|514aa|up_6|NZ_CP047865.1_1683035_1684577_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047865.1_1684601_1686068_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047865.1_1686105_1687374_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047865.1_1687373_1687952_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047865.1_1688464_1688872_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047865.1_1689014_1689677_+	NA	NA|319aa|up_0|NZ_CP047865.1_1689794_1690751_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047865.1_1691545_1691644_-	NA	NA|463aa|down_1|NZ_CP047865.1_1691728_1693117_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047865.1_1693196_1693952_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047865.1_1694443_1695013_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047865.1_1695028_1696552_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047865.1_1696995_1697622_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047865.1_1697891_1698275_+	NA	NA|194aa|down_7|NZ_CP047865.1_1698340_1698922_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047865.1_1699099_1699309_+	NA	NA|84aa|down_9|NZ_CP047865.1_1699347_1699599_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	5	2355656-2355789	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2355673-2355718|2355736-2355772	NZ_CP047865.1_2352149-2352194|NZ_CP047865.1_2352212-2352248	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047865.1_2349325_2349526_+,NA|78aa|down_5|NZ_CP047865.1_2364106_2364340_+,NA|103aa|down_6|NZ_CP047865.1_2364447_2364756_-,NA|89aa|down_7|NZ_CP047865.1_2364899_2365166_-	NA|204aa|up_9|NZ_CP047865.1_2338163_2338775_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|608aa|up_8|NZ_CP047865.1_2341076_2342900_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047865.1_2343038_2343455_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047865.1_2343685_2344378_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047865.1_2344542_2345307_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047865.1_2345459_2346140_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047865.1_2346163_2347717_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047865.1_2347833_2349192_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047865.1_2349325_2349526_+	NA	NA|997aa|up_0|NZ_CP047865.1_2349660_2352651_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047865.1_2356397_2357264_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047865.1_2357474_2358218_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047865.1_2358541_2358898_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_3|NZ_CP047865.1_2359202_2362550_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP047865.1_2362933_2364010_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP047865.1_2364106_2364340_+	NA	NA|103aa|down_6|NZ_CP047865.1_2364447_2364756_-	NA	NA|89aa|down_7|NZ_CP047865.1_2364899_2365166_-	NA	NA|603aa|down_8|NZ_CP047865.1_2365449_2367258_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP047865.1_2367389_2367782_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	6	2431204-2431282	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	2431227-2431259|2431227-2431259|2431227-2431259|2431227-2431259	NZ_CP047865.1_1245406-1245438|NZ_CP047865.1_1281625-1281657|NZ_CP047865.1_2823200-2823168|NZ_CP047865.1_1281681-1281713	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047865.1_2428128_2428788_-,NA|36aa|up_0|NZ_CP047865.1_2430777_2430885_+,NA	NA|610aa|up_9|NZ_CP047865.1_2418619_2420449_+	pfam13520, AA_permease_2, Amino acid permease	NA|693aa|up_8|NZ_CP047865.1_2420589_2422668_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_7|NZ_CP047865.1_2422805_2424215_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_6|NZ_CP047865.1_2424500_2425307_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_5|NZ_CP047865.1_2425369_2426026_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_4|NZ_CP047865.1_2426138_2426612_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|220aa|up_3|NZ_CP047865.1_2428128_2428788_-	NA	NA|381aa|up_2|NZ_CP047865.1_2428847_2429990_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047865.1_2430257_2430644_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047865.1_2430777_2430885_+	NA	NA|588aa|down_0|NZ_CP047865.1_2431587_2433351_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047865.1_2433375_2435109_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047865.1_2435561_2436248_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047865.1_2436225_2437584_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047865.1_2437585_2438593_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047865.1_2438570_2439686_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047865.1_2439696_2440389_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047865.1_2440399_2440867_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047865.1_2440918_2441896_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047865.1_2441897_2442845_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	7	2596050-2596130	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	14	2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105|2596075-2596105	NZ_CP047865.1_1281685-1281715|NZ_CP047865.1_396398-396368|NZ_CP047865.1_726886-726856|NZ_CP047865.1_932986-932956|NZ_CP047865.1_1462337-1462307|NZ_CP047865.1_1729607-1729577|NZ_CP047865.1_80558-80588|NZ_CP047865.1_638308-638338|NZ_CP047865.1_638424-638454|NZ_CP047865.1_1035413-1035443|NZ_CP047865.1_1245410-1245440|NZ_CP047865.1_1281629-1281659|NZ_CP047865.1_2027717-2027747|NZ_CP047865.1_2606876-2606906	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047865.1_2596171_2596357_-,NA|84aa|down_5|NZ_CP047865.1_2599496_2599748_-,NA|106aa|down_8|NZ_CP047865.1_2604869_2605187_-,NA|55aa|down_9|NZ_CP047865.1_2605431_2605596_-	NA|202aa|up_9|NZ_CP047865.1_2588942_2589548_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047865.1_2589717_2590722_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047865.1_2590752_2591259_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047865.1_2591260_2591755_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047865.1_2591817_2593077_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047865.1_2593073_2593559_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047865.1_2593572_2594019_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047865.1_2594024_2594258_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047865.1_2594264_2594864_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047865.1_2594883_2595906_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047865.1_2596171_2596357_-	NA	NA|117aa|down_1|NZ_CP047865.1_2596482_2596833_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047865.1_2596934_2598146_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047865.1_2598138_2598579_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047865.1_2598740_2599505_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047865.1_2599496_2599748_-	NA	NA|422aa|down_6|NZ_CP047865.1_2600136_2601402_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047865.1_2601518_2604686_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047865.1_2604869_2605187_-	NA	NA|55aa|down_9|NZ_CP047865.1_2605431_2605596_-	NA
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	8	2705605-2705690	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047865.1_2716652_2716811_-,NA|35aa|down_8|NZ_CP047865.1_2717490_2717595_+,NA|364aa|down_9|NZ_CP047865.1_2718027_2719119_-	NA|228aa|up_9|NZ_CP047865.1_2680535_2681219_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_8|NZ_CP047865.1_2681395_2682739_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_7|NZ_CP047865.1_2682837_2683311_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_6|NZ_CP047865.1_2683633_2685076_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_5|NZ_CP047865.1_2685223_2686288_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|440aa|up_4|NZ_CP047865.1_2692578_2693898_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|303aa|up_3|NZ_CP047865.1_2694048_2694957_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047865.1_2695145_2695955_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047865.1_2695956_2696889_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047865.1_2696915_2698271_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047865.1_2706312_2707419_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047865.1_2707418_2707853_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047865.1_2707864_2709997_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047865.1_2710031_2711570_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047865.1_2712250_2714056_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047865.1_2714287_2715070_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047865.1_2715137_2715995_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047865.1_2716652_2716811_-	NA	NA|35aa|down_8|NZ_CP047865.1_2717490_2717595_+	NA	NA|364aa|down_9|NZ_CP047865.1_2718027_2719119_-	NA
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	9	2717930-2718011	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047865.1_2716652_2716811_-,NA|35aa|up_0|NZ_CP047865.1_2717490_2717595_+,NA|364aa|down_0|NZ_CP047865.1_2718027_2719119_-,NA|77aa|down_5|NZ_CP047865.1_2722905_2723136_+	NA|2482aa|up_9|NZ_CP047865.1_2698548_2705994_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047865.1_2706312_2707419_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047865.1_2707418_2707853_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047865.1_2707864_2709997_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047865.1_2710031_2711570_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047865.1_2712250_2714056_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047865.1_2714287_2715070_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047865.1_2715137_2715995_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047865.1_2716652_2716811_-	NA	NA|35aa|up_0|NZ_CP047865.1_2717490_2717595_+	NA	NA|364aa|down_0|NZ_CP047865.1_2718027_2719119_-	NA	NA|326aa|down_1|NZ_CP047865.1_2719384_2720362_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047865.1_2720363_2720684_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047865.1_2720835_2721501_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047865.1_2721936_2722875_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047865.1_2722905_2723136_+	NA	NA|458aa|down_6|NZ_CP047865.1_2723807_2725181_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047865.1_2725637_2726051_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047865.1_2726250_2726694_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047865.1_2726814_2727525_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009913015.1_ASM991301v1	NZ_CP047865	Staphylococcus aureus strain UP_844 chromosome, complete genome	10	2847186-2847267	9	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	2847210-2847243|2847210-2847243|2847210-2847243|2847210-2847243|2847210-2847243	NZ_CP047865.1_938587-938554|NZ_CP047865.1_1294426-1294459|NZ_CP047865.1_284327-284294|NZ_CP047865.1_722438-722471|NZ_CP047865.1_2157367-2157400	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|81aa|down_4|NZ_CP047865.1_2853458_2853701_-,NA|61aa|down_6|NZ_CP047865.1_2854794_2854977_-,NA|114aa|down_7|NZ_CP047865.1_2855180_2855522_-	NA|48aa|up_9|NZ_CP047865.1_2837370_2837514_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP047865.1_2837516_2838080_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP047865.1_2838315_2838450_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP047865.1_2839049_2839835_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP047865.1_2840195_2840822_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP047865.1_2841018_2842278_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP047865.1_2842302_2843046_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP047865.1_2843220_2843505_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP047865.1_2843580_2845197_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP047865.1_2845736_2847044_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP047865.1_2847487_2848711_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP047865.1_2849146_2850202_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP047865.1_2850223_2851240_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP047865.1_2852358_2853396_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_4|NZ_CP047865.1_2853458_2853701_-	NA	NA|328aa|down_5|NZ_CP047865.1_2853711_2854695_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_6|NZ_CP047865.1_2854794_2854977_-	NA	NA|114aa|down_7|NZ_CP047865.1_2855180_2855522_-	NA	DEDDh|311aa|down_8|NZ_CP047865.1_2855527_2856460_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|238aa|down_9|NZ_CP047865.1_2856475_2857189_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
