assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	1	239127-239215	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TCTGTGTTGGGGCCCTTACCCCAACTTGCA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|188aa|up_9|NZ_CP047852.1_221510_222074_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP047852.1_222070_223024_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP047852.1_223133_224315_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|up_6|NZ_CP047852.1_224605_227020_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP047852.1_227041_227353_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP047852.1_227678_234239_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP047852.1_234355_235624_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP047852.1_236030_237692_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP047852.1_237688_238384_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP047852.1_238400_238823_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP047852.1_239518_240928_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP047852.1_240931_241780_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP047852.1_242329_243121_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP047852.1_243135_243780_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP047852.1_244249_245092_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP047852.1_245216_245528_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP047852.1_245614_246691_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP047852.1_246755_247067_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP047852.1_247166_248024_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP047852.1_248052_248649_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2	296505-296590	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CCCACCCCAACTTGCATGGTCTGTAGAA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|38aa|up_4|NZ_CP047852.1_292068_292182_+,NA	NA|165aa|up_9|NZ_CP047852.1_287085_287580_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP047852.1_287702_288650_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP047852.1_288737_289940_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP047852.1_290185_290686_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP047852.1_290826_291945_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|38aa|up_4|NZ_CP047852.1_292068_292182_+	NA	NA|352aa|up_3|NZ_CP047852.1_292260_293316_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP047852.1_293490_294180_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP047852.1_294484_294898_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP047852.1_295102_296401_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP047852.1_296854_297796_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP047852.1_297816_301014_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP047852.1_301463_302693_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP047852.1_302887_303745_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP047852.1_303744_304689_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP047852.1_304957_305926_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP047852.1_305947_307705_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP047852.1_308052_309414_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP047852.1_309761_310883_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP047852.1_310931_312200_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	3	382539-382620	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCAACAGGCAATGGAAGTTGGGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|43aa|up_8|NZ_CP047852.1_375237_375366_+,NA|49aa|up_3|NZ_CP047852.1_378402_378549_+,NA	NA|589aa|up_9|NZ_CP047852.1_373138_374905_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP047852.1_375237_375366_+	NA	NA|258aa|up_7|NZ_CP047852.1_375365_376139_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP047852.1_376299_377574_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP047852.1_377658_378081_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP047852.1_378180_378363_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP047852.1_378402_378549_+	NA	NA|338aa|up_2|NZ_CP047852.1_378784_379798_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP047852.1_380109_381252_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP047852.1_381252_382371_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP047852.1_382891_383560_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP047852.1_383561_386039_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP047852.1_386381_389012_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP047852.1_389074_389335_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP047852.1_389338_389767_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP047852.1_389781_390090_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP047852.1_390374_391013_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP047852.1_391015_391939_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP047852.1_391950_393219_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP047852.1_393218_393842_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	4	414995-415074	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGGGGCCCCAACATAGAGAATTT	23	1	15	415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051|415018-415051	NZ_CP047852.1_1159144-1159177|NZ_CP047852.1_1206683-1206716|NZ_CP047852.1_1764922-1764955|NZ_CP047852.1_1749665-1749632|NZ_CP047852.1_1873185-1873152|NZ_CP047852.1_78326-78359|NZ_CP047852.1_597858-597891|NZ_CP047852.1_964403-964436|NZ_CP047852.1_1193986-1194019|NZ_CP047852.1_1201249-1201282|NZ_CP047852.1_239237-239204|NZ_CP047852.1_686048-686015|NZ_CP047852.1_1898317-1898284|NZ_CP047852.1_2297288-2297255|NZ_CP047852.1_2458900-2458867	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047852.1_405658_406228_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047852.1_406217_406802_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047852.1_406802_407156_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047852.1_407158_407875_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047852.1_407914_408601_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047852.1_408692_409154_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047852.1_409212_411360_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047852.1_411416_412391_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047852.1_412435_412687_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047852.1_413032_414856_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047852.1_415419_416544_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047852.1_416644_417622_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047852.1_417653_418280_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047852.1_418348_420181_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047852.1_420316_421456_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047852.1_421459_422398_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047852.1_422399_423152_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047852.1_423158_424505_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047852.1_424797_424974_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047852.1_425217_425901_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	5	889815-889896	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CTATGTTGGGGCCCCGCCAACTTGCA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|76aa|up_6|NZ_CP047852.1_882571_882799_-,NA|75aa|down_0|NZ_CP047852.1_890156_890381_-,NA|49aa|down_1|NZ_CP047852.1_890337_890484_-,NA|78aa|down_3|NZ_CP047852.1_892592_892826_+,NA|62aa|down_4|NZ_CP047852.1_893447_893633_+,NA|169aa|down_7|NZ_CP047852.1_895432_895939_-	NA|45aa|up_9|NZ_CP047852.1_879844_879979_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP047852.1_880883_881072_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|322aa|up_7|NZ_CP047852.1_881320_882286_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP047852.1_882571_882799_-	NA	NA|502aa|up_5|NZ_CP047852.1_883105_884611_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP047852.1_884833_885766_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP047852.1_885788_886790_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP047852.1_887229_887955_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP047852.1_888049_888775_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP047852.1_888882_889599_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP047852.1_890156_890381_-	NA	NA|49aa|down_1|NZ_CP047852.1_890337_890484_-	NA	NA|320aa|down_2|NZ_CP047852.1_891156_892116_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP047852.1_892592_892826_+	NA	NA|62aa|down_4|NZ_CP047852.1_893447_893633_+	NA	NA|117aa|down_5|NZ_CP047852.1_894172_894523_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP047852.1_894676_895174_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP047852.1_895432_895939_-	NA	NA|142aa|down_8|NZ_CP047852.1_896584_897010_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|110aa|down_9|NZ_CP047852.1_897378_897708_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	6	912723-912814	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_3|NZ_CP047852.1_917986_918094_-,NA|359aa|down_8|NZ_CP047852.1_921121_922198_-	NA|267aa|up_9|NZ_CP047852.1_899291_900092_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|272aa|up_8|NZ_CP047852.1_900327_901143_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_7|NZ_CP047852.1_901142_902909_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_6|NZ_CP047852.1_902960_903575_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_5|NZ_CP047852.1_903898_905680_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|105aa|up_4|NZ_CP047852.1_906004_906319_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP047852.1_906491_908840_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP047852.1_908849_910562_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP047852.1_910634_911156_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP047852.1_911156_911423_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP047852.1_913165_915568_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP047852.1_915567_916626_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP047852.1_917006_917747_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|36aa|down_3|NZ_CP047852.1_917986_918094_-	NA	NA|108aa|down_4|NZ_CP047852.1_918130_918454_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_5|NZ_CP047852.1_918472_919207_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_6|NZ_CP047852.1_919268_920237_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_7|NZ_CP047852.1_920246_921125_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_8|NZ_CP047852.1_921121_922198_-	NA	NA|228aa|down_9|NZ_CP047852.1_922197_922881_-	TIGR03656, IsdC, heme uptake protein IsdC
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	7	990797-990878	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGGGATGGGCCCCAACA	25	1	16	990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853|990822-990853	NZ_CP047852.1_78316-78347|NZ_CP047852.1_597848-597879|NZ_CP047852.1_686058-686027|NZ_CP047852.1_1159134-1159165|NZ_CP047852.1_1201239-1201270|NZ_CP047852.1_1206673-1206704|NZ_CP047852.1_1764912-1764943|NZ_CP047852.1_1873195-1873164|NZ_CP047852.1_1898327-1898296|NZ_CP047852.1_2458910-2458879|NZ_CP047852.1_239247-239216|NZ_CP047852.1_1089309-1089340|NZ_CP047852.1_1193976-1194007|NZ_CP047852.1_1749675-1749644|NZ_CP047852.1_2297298-2297267|NZ_CP047852.1_889986-889955	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|40aa|down_1|NZ_CP047852.1_991735_991855_-	NA|189aa|up_9|NZ_CP047852.1_980953_981520_-	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|343aa|up_8|NZ_CP047852.1_981522_982551_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|495aa|up_7|NZ_CP047852.1_982543_984028_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|730aa|up_6|NZ_CP047852.1_984006_986196_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|224aa|up_5|NZ_CP047852.1_986188_986860_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|88aa|up_4|NZ_CP047852.1_986861_987125_-	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|235aa|up_3|NZ_CP047852.1_987124_987829_-	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|375aa|up_2|NZ_CP047852.1_987832_988957_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|161aa|up_1|NZ_CP047852.1_988943_989426_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|287aa|up_0|NZ_CP047852.1_989626_990487_+	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|106aa|down_0|NZ_CP047852.1_991270_991588_+	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|40aa|down_1|NZ_CP047852.1_991735_991855_-	NA	NA|367aa|down_2|NZ_CP047852.1_992159_993260_+	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|663aa|down_3|NZ_CP047852.1_993259_995248_+	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|202aa|down_4|NZ_CP047852.1_995237_995843_+	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|97aa|down_5|NZ_CP047852.1_995839_996130_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|398aa|down_6|NZ_CP047852.1_996666_997860_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|409aa|down_7|NZ_CP047852.1_998310_999537_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|157aa|down_8|NZ_CP047852.1_999584_1000055_+	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|145aa|down_9|NZ_CP047852.1_1000209_1000644_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	8	1159154-1159235	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1159178-1159211	NZ_CP047852.1_685955-685922	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047852.1_1160218_1160332_-	NA|414aa|up_9|NZ_CP047852.1_1149582_1150824_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047852.1_1150938_1152246_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047852.1_1152343_1153105_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047852.1_1153432_1154284_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047852.1_1154516_1154711_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047852.1_1155064_1155886_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047852.1_1155903_1156599_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047852.1_1156591_1157617_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047852.1_1157866_1158163_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047852.1_1158155_1158542_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047852.1_1159338_1160217_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047852.1_1160218_1160332_-	NA	NA|127aa|down_2|NZ_CP047852.1_1160395_1160776_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047852.1_1160933_1161290_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047852.1_1161433_1161754_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047852.1_1161903_1162443_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047852.1_1162525_1163242_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047852.1_1163389_1163812_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047852.1_1164210_1164705_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047852.1_1164859_1165477_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	9	1362804-1362896	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|239aa|up_5|NZ_CP047852.1_1357671_1358388_-,NA|169aa|up_4|NZ_CP047852.1_1358549_1359056_-,NA|36aa|down_3|NZ_CP047852.1_1366119_1366227_-	NA|75aa|up_9|NZ_CP047852.1_1353794_1354019_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047852.1_1354213_1355143_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047852.1_1356090_1356465_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047852.1_1356714_1357503_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047852.1_1357671_1358388_-	NA	NA|169aa|up_4|NZ_CP047852.1_1358549_1359056_-	NA	NA|267aa|up_3|NZ_CP047852.1_1359191_1359992_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047852.1_1359975_1360695_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047852.1_1360749_1361700_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047852.1_1361847_1362675_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047852.1_1363047_1363683_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047852.1_1363952_1365614_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047852.1_1365610_1365994_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP047852.1_1366119_1366227_-	NA	NA|337aa|down_4|NZ_CP047852.1_1366301_1367312_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP047852.1_1367810_1368332_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP047852.1_1368359_1369655_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP047852.1_1369694_1370171_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP047852.1_1370339_1370876_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP047852.1_1371084_1372023_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	10	1873091-1873175	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1873117-1873149|1873117-1873149|1873117-1873149	NZ_CP047852.1_685922-685954|NZ_CP047852.1_964471-964439|NZ_CP047852.1_990900-990868	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|68aa|up_0|NZ_CP047852.1_1872825_1873029_+,NA|402aa|down_9|NZ_CP047852.1_1882823_1884029_-	NA|2392aa|up_9|NZ_CP047852.1_1857230_1864406_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP047852.1_1864852_1866103_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP047852.1_1866488_1867514_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP047852.1_1867686_1868046_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP047852.1_1868262_1869294_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP047852.1_1869306_1870068_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|325aa|up_3|NZ_CP047852.1_1870064_1871039_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP047852.1_1871052_1871793_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP047852.1_1872134_1872647_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP047852.1_1872825_1873029_+	NA	NA|320aa|down_0|NZ_CP047852.1_1873323_1874283_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP047852.1_1874929_1876417_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP047852.1_1876843_1877227_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP047852.1_1877233_1877560_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP047852.1_1877624_1878770_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP047852.1_1878846_1880109_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP047852.1_1880162_1881050_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP047852.1_1881049_1881607_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP047852.1_1881617_1882823_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|402aa|down_9|NZ_CP047852.1_1882823_1884029_-	NA
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	11	2047880-2048016	11	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGAGCCCCAACATA	25	2	16	2047905-2047935|2047905-2047935|2047905-2047935|2047905-2047935|2047905-2047935|2047905-2047935|2047905-2047935|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991|2047961-2047991	NZ_CP047852.1_685940-685910|NZ_CP047852.1_1898268-1898238|NZ_CP047852.1_2458794-2458764|NZ_CP047852.1_964453-964483|NZ_CP047852.1_78259-78289|NZ_CP047852.1_415067-415097|NZ_CP047852.1_1201182-1201212|NZ_CP047852.1_889815-889785|NZ_CP047852.1_1158811-1158841|NZ_CP047852.1_1158867-1158897|NZ_CP047852.1_1194035-1194065|NZ_CP047852.1_805945-805915|NZ_CP047852.1_1110166-1110136|NZ_CP047852.1_1194091-1194121|NZ_CP047852.1_2493139-2493169|NZ_CP047852.1_2493195-2493225	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|273aa|up_9|NZ_CP047852.1_2037736_2038555_+	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional	NA|205aa|up_8|NZ_CP047852.1_2038572_2039187_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_7|NZ_CP047852.1_2039179_2040430_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_6|NZ_CP047852.1_2040445_2041459_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_5|NZ_CP047852.1_2041427_2042006_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_4|NZ_CP047852.1_2042002_2042581_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_3|NZ_CP047852.1_2042573_2043278_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_2|NZ_CP047852.1_2043274_2044033_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_1|NZ_CP047852.1_2044029_2044662_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|681aa|up_0|NZ_CP047852.1_2045745_2047788_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP047852.1_2048234_2049287_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP047852.1_2049273_2050146_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP047852.1_2050142_2050448_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP047852.1_2050411_2051650_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP047852.1_2051813_2052374_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP047852.1_2053222_2053885_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP047852.1_2053901_2054594_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP047852.1_2054590_2055358_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP047852.1_2055592_2056093_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP047852.1_2056095_2056572_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	12	2251756-2251889	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|101aa|up_1|NZ_CP047852.1_2248851_2249154_+,NA|34aa|up_0|NZ_CP047852.1_2249202_2249304_+,NA|525aa|down_2|NZ_CP047852.1_2257538_2259113_+,NA|78aa|down_6|NZ_CP047852.1_2262014_2262248_+,NA|103aa|down_7|NZ_CP047852.1_2262355_2262664_-,NA|89aa|down_8|NZ_CP047852.1_2262793_2263060_-	NA|426aa|up_9|NZ_CP047852.1_2238515_2239793_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047852.1_2240702_2242526_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047852.1_2242664_2243081_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047852.1_2243311_2244004_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047852.1_2244168_2244933_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047852.1_2245086_2245767_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047852.1_2245791_2247345_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047852.1_2247461_2248820_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|101aa|up_1|NZ_CP047852.1_2248851_2249154_+	NA	NA|34aa|up_0|NZ_CP047852.1_2249202_2249304_+	NA	NA|930aa|down_0|NZ_CP047852.1_2253015_2255805_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP047852.1_2255984_2256851_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|525aa|down_2|NZ_CP047852.1_2257538_2259113_+	NA	NA|223aa|down_3|NZ_CP047852.1_2259105_2259774_+	pfam13578, Methyltransf_24, Methyltransferase domain	NA|355aa|down_4|NZ_CP047852.1_2259770_2260835_+	cd00609, AAT_like, Aspartate aminotransferase family	NA|398aa|down_5|NZ_CP047852.1_2260840_2262034_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NZ_CP047852.1_2262014_2262248_+	NA	NA|103aa|down_7|NZ_CP047852.1_2262355_2262664_-	NA	NA|89aa|down_8|NZ_CP047852.1_2262793_2263060_-	NA	NA|603aa|down_9|NZ_CP047852.1_2263343_2265152_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	13	2297192-2297278	12	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CCCACCCCAACTTACATTGTCTGTAGAA	28	1	9	2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250|2297220-2297250	NZ_CP047852.1_685922-685952|NZ_CP047852.1_1898250-1898280|NZ_CP047852.1_78277-78247|NZ_CP047852.1_964471-964441|NZ_CP047852.1_1201430-1201400|NZ_CP047852.1_2458776-2458806|NZ_CP047852.1_415085-415055|NZ_CP047852.1_990900-990870|NZ_CP047852.1_1201200-1201170	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|250aa|up_9|NZ_CP047852.1_2286739_2287489_-,NA|47aa|down_2|NZ_CP047852.1_2299961_2300102_+	NA|250aa|up_9|NZ_CP047852.1_2286739_2287489_-	NA	NA|526aa|up_8|NZ_CP047852.1_2287683_2289261_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|152aa|up_7|NZ_CP047852.1_2289428_2289884_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|up_6|NZ_CP047852.1_2290243_2290501_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|89aa|up_5|NZ_CP047852.1_2290500_2290767_+	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|359aa|up_4|NZ_CP047852.1_2291122_2292199_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|221aa|up_3|NZ_CP047852.1_2292446_2293109_+	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|259aa|up_2|NZ_CP047852.1_2293101_2293878_+	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|396aa|up_1|NZ_CP047852.1_2294273_2295461_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|451aa|up_0|NZ_CP047852.1_2295522_2296875_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|546aa|down_0|NZ_CP047852.1_2297541_2299179_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|200aa|down_1|NZ_CP047852.1_2299358_2299958_+	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]	NA|47aa|down_2|NZ_CP047852.1_2299961_2300102_+	NA	NA|52aa|down_3|NZ_CP047852.1_2300181_2300337_+	pfam14762, HPS3_Mid, Hermansky-Pudlak syndrome 3, middle region	NA|272aa|down_4|NZ_CP047852.1_2300384_2301200_-	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]	NA|481aa|down_5|NZ_CP047852.1_2301192_2302635_-	pfam00665, rve, Integrase core domain	NA|198aa|down_6|NZ_CP047852.1_2302606_2303200_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|127aa|down_7|NZ_CP047852.1_2303463_2303844_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|586aa|down_8|NZ_CP047852.1_2303833_2305591_-	COG4219, MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]	NA|282aa|down_9|NZ_CP047852.1_2305697_2306543_+	COG2367, PenP, Beta-lactamase class A [Defense mechanisms]
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	14	2603402-2603487	13	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAACATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047852.1_2614449_2614608_-,NA|35aa|down_8|NZ_CP047852.1_2615287_2615392_+,NA|364aa|down_9|NZ_CP047852.1_2615833_2616925_-	NA|396aa|up_9|NZ_CP047852.1_2578684_2579872_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP047852.1_2579890_2580574_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP047852.1_2580750_2582094_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP047852.1_2582192_2582666_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP047852.1_2582988_2584431_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP047852.1_2584578_2585643_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP047852.1_2591881_2592790_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047852.1_2592978_2593788_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047852.1_2593789_2594722_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047852.1_2594748_2596104_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047852.1_2604109_2605216_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047852.1_2605215_2605650_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047852.1_2605661_2607794_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047852.1_2607828_2609367_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047852.1_2610047_2611853_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047852.1_2612084_2612867_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047852.1_2612934_2613792_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047852.1_2614449_2614608_-	NA	NA|35aa|down_8|NZ_CP047852.1_2615287_2615392_+	NA	NA|364aa|down_9|NZ_CP047852.1_2615833_2616925_-	NA
GCF_009913035.1_ASM991303v1	NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	15	2615727-2615817	14	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047852.1_2614449_2614608_-,NA|35aa|up_0|NZ_CP047852.1_2615287_2615392_+,NA|364aa|down_0|NZ_CP047852.1_2615833_2616925_-,NA|77aa|down_5|NZ_CP047852.1_2620714_2620945_+	NA|452aa|up_9|NZ_CP047852.1_2594748_2596104_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP047852.1_2604109_2605216_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047852.1_2605215_2605650_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047852.1_2605661_2607794_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047852.1_2607828_2609367_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047852.1_2610047_2611853_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047852.1_2612084_2612867_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047852.1_2612934_2613792_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047852.1_2614449_2614608_-	NA	NA|35aa|up_0|NZ_CP047852.1_2615287_2615392_+	NA	NA|364aa|down_0|NZ_CP047852.1_2615833_2616925_-	NA	NA|327aa|down_1|NZ_CP047852.1_2617190_2618171_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047852.1_2618172_2618493_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047852.1_2618644_2619310_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047852.1_2619745_2620684_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047852.1_2620714_2620945_+	NA	NA|458aa|down_6|NZ_CP047852.1_2621616_2622990_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047852.1_2623446_2623860_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047852.1_2624059_2624503_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047852.1_2624623_2625334_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
