assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	1	414306-414385	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCAACATAGAGAATTTCGTAAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|43aa|up_8|NZ_CP047799.1_406864_406993_+,NA|49aa|up_3|NZ_CP047799.1_410029_410176_+,NA	NA|589aa|up_9|NZ_CP047799.1_404765_406532_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP047799.1_406864_406993_+	NA	NA|258aa|up_7|NZ_CP047799.1_406992_407766_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP047799.1_407926_409201_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP047799.1_409285_409708_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP047799.1_409807_409990_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP047799.1_410029_410176_+	NA	NA|338aa|up_2|NZ_CP047799.1_410412_411426_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP047799.1_411735_412878_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP047799.1_412878_413997_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP047799.1_414678_415347_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP047799.1_415348_417826_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP047799.1_418168_420799_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP047799.1_420861_421122_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP047799.1_421125_421554_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP047799.1_421568_421877_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP047799.1_422161_422800_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP047799.1_422802_423726_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP047799.1_423737_425006_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP047799.1_425005_425629_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2	858172-858264	2	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|117aa|up_9|NZ_CP047799.1_847735_848086_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP047799.1_848188_848926_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP047799.1_848925_849429_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP047799.1_849616_849892_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP047799.1_850326_851694_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP047799.1_851719_852052_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP047799.1_852038_853289_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP047799.1_853288_856855_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP047799.1_857001_857733_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP047799.1_857848_858082_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP047799.1_858387_859122_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP047799.1_859114_860041_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP047799.1_860033_861020_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP047799.1_861024_861597_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP047799.1_861799_863860_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP047799.1_864049_865696_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP047799.1_865710_866085_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP047799.1_866527_866716_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP047799.1_867096_867738_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP047799.1_867744_868389_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	3	1159062-1159147	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGGCTTT	30	1	2	1159092-1159117|1159092-1159117	NZ_CP047799.1_2714034-2714059|NZ_CP047799.1_2774113-2774138	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047799.1_1143096_1143999_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047799.1_1144164_1147818_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047799.1_1147818_1151295_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047799.1_1151454_1152030_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047799.1_1152045_1152570_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047799.1_1152574_1153150_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047799.1_1153475_1154807_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047799.1_1155157_1156363_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047799.1_1156352_1157732_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047799.1_1157973_1158903_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047799.1_1159297_1160542_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047799.1_1160650_1161841_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047799.1_1162148_1163276_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047799.1_1163637_1164015_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047799.1_1164429_1165023_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047799.1_1165086_1165470_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047799.1_1165600_1168006_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047799.1_1167998_1168427_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047799.1_1168438_1168768_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047799.1_1168760_1170257_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	4	1208190-1208269	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|155aa|up_9|NZ_CP047799.1_1198056_1198521_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|414aa|up_8|NZ_CP047799.1_1198510_1199752_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_7|NZ_CP047799.1_1199866_1201174_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_6|NZ_CP047799.1_1201271_1202033_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_5|NZ_CP047799.1_1202360_1203212_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_4|NZ_CP047799.1_1203445_1203640_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_3|NZ_CP047799.1_1204455_1205277_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_2|NZ_CP047799.1_1205294_1205990_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_1|NZ_CP047799.1_1205982_1207008_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_0|NZ_CP047799.1_1207257_1207554_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|293aa|down_0|NZ_CP047799.1_1208522_1209401_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP047799.1_1209578_1209959_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047799.1_1210116_1210473_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047799.1_1210616_1210937_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047799.1_1211086_1211626_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047799.1_1211708_1212425_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047799.1_1212572_1212995_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047799.1_1213393_1213888_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047799.1_1214043_1214661_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047799.1_1214733_1215294_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	5	1266535-1266619	5	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1266561-1266593|1266561-1266593	NZ_CP047799.1_2519124-2519092|NZ_CP047799.1_1033599-1033631	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|33aa|down_1|NZ_CP047799.1_1268079_1268178_-	NA|304aa|up_9|NZ_CP047799.1_1252010_1252922_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_8|NZ_CP047799.1_1253689_1254625_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_7|NZ_CP047799.1_1254691_1256131_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|281aa|up_6|NZ_CP047799.1_1256630_1257473_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP047799.1_1257478_1258411_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP047799.1_1259021_1261868_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP047799.1_1261875_1263861_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP047799.1_1264129_1264366_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|223aa|up_1|NZ_CP047799.1_1264362_1265031_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP047799.1_1265186_1266026_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP047799.1_1266794_1267905_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP047799.1_1268079_1268178_-	NA	NA|844aa|down_2|NZ_CP047799.1_1268219_1270751_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP047799.1_1271164_1271737_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP047799.1_1271797_1272472_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_5|NZ_CP047799.1_1272464_1273547_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|289aa|down_6|NZ_CP047799.1_1273910_1274777_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_7|NZ_CP047799.1_1274920_1275562_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_8|NZ_CP047799.1_1275725_1276781_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_9|NZ_CP047799.1_1277098_1278169_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	6	1354252-1354351	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|100aa|up_6|NZ_CP047799.1_1348354_1348654_-,NA|130aa|up_5|NZ_CP047799.1_1348791_1349181_-,NA|230aa|up_3|NZ_CP047799.1_1349817_1350507_+,NA|39aa|down_2|NZ_CP047799.1_1356296_1356413_-	NA|153aa|up_9|NZ_CP047799.1_1346611_1347070_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_8|NZ_CP047799.1_1347071_1347638_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_7|NZ_CP047799.1_1347732_1348275_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_6|NZ_CP047799.1_1348354_1348654_-	NA	NA|130aa|up_5|NZ_CP047799.1_1348791_1349181_-	NA	NA|148aa|up_4|NZ_CP047799.1_1349247_1349691_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_3|NZ_CP047799.1_1349817_1350507_+	NA	NA|549aa|up_2|NZ_CP047799.1_1350661_1352308_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|156aa|up_1|NZ_CP047799.1_1352549_1353017_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_CP047799.1_1353013_1354234_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_CP047799.1_1354523_1355390_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_CP047799.1_1355507_1356152_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_CP047799.1_1356296_1356413_-	NA	NA|158aa|down_3|NZ_CP047799.1_1356504_1356978_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_CP047799.1_1356977_1357694_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_CP047799.1_1357883_1358243_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_CP047799.1_1358388_1360539_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_CP047799.1_1361220_1361865_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_CP047799.1_1362225_1363023_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_CP047799.1_1363609_1364617_-	pfam01384, PHO4, Phosphate transporter family
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	7	1418990-1419082	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCACCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP047799.1_1413785_1414502_-,NA|169aa|up_4|NZ_CP047799.1_1414663_1415170_-,NA	NA|75aa|up_9|NZ_CP047799.1_1409909_1410134_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047799.1_1410326_1411256_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047799.1_1412204_1412579_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047799.1_1412828_1413617_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047799.1_1413785_1414502_-	NA	NA|169aa|up_4|NZ_CP047799.1_1414663_1415170_-	NA	NA|267aa|up_3|NZ_CP047799.1_1415305_1416106_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047799.1_1416089_1416809_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047799.1_1416863_1417814_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047799.1_1417963_1418791_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047799.1_1419230_1419866_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047799.1_1420344_1422006_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047799.1_1422002_1422386_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_CP047799.1_1422694_1423705_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_CP047799.1_1424203_1424725_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_CP047799.1_1424752_1426048_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_CP047799.1_1426087_1426564_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_CP047799.1_1426732_1427269_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_CP047799.1_1427478_1428417_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|210aa|down_9|NZ_CP047799.1_1428869_1429499_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	8	2311303-2311436	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_0|NZ_CP047799.1_2308475_2308676_+,NA|103aa|down_2|NZ_CP047799.1_2316565_2316874_-,NA|89aa|down_3|NZ_CP047799.1_2317017_2317284_-	NA|204aa|up_9|NZ_CP047799.1_2297309_2297921_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047799.1_2298471_2299749_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047799.1_2300225_2302049_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047799.1_2302187_2302604_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047799.1_2302834_2303527_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP047799.1_2303691_2304423_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047799.1_2304609_2305290_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047799.1_2305314_2306868_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047799.1_2306984_2308343_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP047799.1_2308475_2308676_+	NA	NA|910aa|down_0|NZ_CP047799.1_2312663_2315393_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP047799.1_2315572_2316439_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_2|NZ_CP047799.1_2316565_2316874_-	NA	NA|89aa|down_3|NZ_CP047799.1_2317017_2317284_-	NA	NA|603aa|down_4|NZ_CP047799.1_2317567_2319376_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_5|NZ_CP047799.1_2319492_2319885_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_6|NZ_CP047799.1_2319886_2322748_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_7|NZ_CP047799.1_2323054_2323828_+	pfam04507, DUF576, Csa1 family	NA|254aa|down_8|NZ_CP047799.1_2323937_2324699_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_9|NZ_CP047799.1_2324808_2325603_+	pfam04507, DUF576, Csa1 family
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	9	2314874-2315132	2,8	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	1	1	2315031-2315053	NZ_CP047799.1_2311661-2311683	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_1|NZ_CP047799.1_2308475_2308676_+,NA|103aa|down_1|NZ_CP047799.1_2316565_2316874_-,NA|89aa|down_2|NZ_CP047799.1_2317017_2317284_-,NA|41aa|down_9|NZ_CP047799.1_2325606_2325729_-	NA|426aa|up_9|NZ_CP047799.1_2298471_2299749_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047799.1_2300225_2302049_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047799.1_2302187_2302604_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047799.1_2302834_2303527_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_5|NZ_CP047799.1_2303691_2304423_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047799.1_2304609_2305290_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047799.1_2305314_2306868_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047799.1_2306984_2308343_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047799.1_2308475_2308676_+	NA	NA|1057aa|up_0|NZ_CP047799.1_2308810_2311981_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047799.1_2315572_2316439_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047799.1_2316565_2316874_-	NA	NA|89aa|down_2|NZ_CP047799.1_2317017_2317284_-	NA	NA|603aa|down_3|NZ_CP047799.1_2317567_2319376_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047799.1_2319492_2319885_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047799.1_2319886_2322748_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047799.1_2323054_2323828_+	pfam04507, DUF576, Csa1 family	NA|254aa|down_7|NZ_CP047799.1_2323937_2324699_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_8|NZ_CP047799.1_2324808_2325603_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_9|NZ_CP047799.1_2325606_2325729_-	NA
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	10	2400553-2400657	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047799.1_2400193_2400298_+,NA|35aa|down_2|NZ_CP047799.1_2402828_2402933_-	NA|453aa|up_9|NZ_CP047799.1_2390151_2391510_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047799.1_2391511_2392519_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047799.1_2392496_2393612_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047799.1_2393622_2394315_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047799.1_2394325_2394793_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047799.1_2394844_2395822_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047799.1_2395823_2396771_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047799.1_2397320_2398250_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047799.1_2398785_2400099_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047799.1_2400193_2400298_+	NA	NA|289aa|down_0|NZ_CP047799.1_2400796_2401663_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047799.1_2401989_2402676_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047799.1_2402828_2402933_-	NA	NA|480aa|down_3|NZ_CP047799.1_2403106_2404546_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047799.1_2404666_2405446_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047799.1_2405426_2406146_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047799.1_2406142_2406874_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047799.1_2406970_2408221_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047799.1_2408475_2408838_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047799.1_2408856_2409456_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	11	2591666-2591791	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_1|NZ_CP047799.1_2592685_2592868_+,NA|56aa|down_8|NZ_CP047799.1_2601216_2601384_-	NA|130aa|up_9|NZ_CP047799.1_2583137_2583527_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|315aa|up_8|NZ_CP047799.1_2583601_2584546_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_7|NZ_CP047799.1_2584562_2584931_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_6|NZ_CP047799.1_2585463_2586273_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047799.1_2586269_2587130_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047799.1_2587119_2587926_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP047799.1_2587930_2588725_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047799.1_2588973_2589411_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047799.1_2589424_2589823_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047799.1_2590171_2591608_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP047799.1_2591856_2592036_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP047799.1_2592685_2592868_+	NA	NA|555aa|down_2|NZ_CP047799.1_2593337_2595002_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047799.1_2595038_2595743_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047799.1_2596133_2596559_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047799.1_2596853_2597669_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP047799.1_2597879_2598734_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP047799.1_2598793_2601220_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP047799.1_2601216_2601384_-	NA	NA|139aa|down_9|NZ_CP047799.1_2601626_2602043_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCF_009913075.1_ASM991307v1	NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	12	2669249-2669339	11	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_CP047799.1_2667971_2668130_-,NA|35aa|up_0|NZ_CP047799.1_2668809_2668914_+,NA|364aa|down_0|NZ_CP047799.1_2669355_2670447_-,NA|77aa|down_5|NZ_CP047799.1_2674236_2674467_+	NA|452aa|up_9|NZ_CP047799.1_2648279_2649635_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP047799.1_2657630_2658737_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047799.1_2658736_2659171_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047799.1_2659182_2661315_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047799.1_2661349_2662888_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047799.1_2663568_2665374_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047799.1_2665605_2666388_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047799.1_2666455_2667313_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047799.1_2667971_2668130_-	NA	NA|35aa|up_0|NZ_CP047799.1_2668809_2668914_+	NA	NA|364aa|down_0|NZ_CP047799.1_2669355_2670447_-	NA	NA|327aa|down_1|NZ_CP047799.1_2670712_2671693_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047799.1_2671694_2672015_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047799.1_2672166_2672832_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047799.1_2673267_2674206_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047799.1_2674236_2674467_+	NA	NA|458aa|down_6|NZ_CP047799.1_2675139_2676513_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047799.1_2676961_2677375_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047799.1_2677574_2678018_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|240aa|down_9|NZ_CP047799.1_2678129_2678849_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
